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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946448
Clone id YMU02A01NGRL0012_K19
Library
Length 416
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_K19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GACTTGAAAAATGTTGTGACAACCGAGAAACTGGATTCCAAGACAAAAAGGGTAGAGACA
AGAAAGGAAACAAAGGGGCTGTTTGAGGAAAGGTTCAAGACAGGAAAGAACAGGTGGTTC
TTCTCCAAGTTGCGGTTTTAGGCTAGCTATGGTACTTGTCTAGACAGCATGATTGGGCTG
CGAGCTCTCAAGTTTTGGAAGTCTTTGCATGGACGACTTCCTCCAAGGGGTCGTTCATCT
TTTAATGCCAATTTTATTGAGCTTACTCTCTGTATTGGTGTCTCTACCTTTGGATTTTCT
CTTTGAGTTCCTCTTTGAGGTTATAAGAAGTGATGATTAAGTTTAAAAAAAAAACAAAAA
AGAAGAAAATAAATAAAAAATTCAGGGAAAATAAAAACCATAAAAAAAGGAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SKX8
Definition sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana
Align length 46
Score (bit) 53.1
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946448|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_K19, 5'
         (344 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis...    53   4e-07
sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis...    49   8e-06
sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis...    49   1e-05
sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN...    46   5e-05
sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys ste...    42   7e-04
sp|P91914|RL27_CAEEL 60S ribosomal protein L27 OS=Caenorhabditis...    42   0.001
sp|P0C2H7|RL27B_YEAST 60S ribosomal protein L27-B OS=Saccharomyc...    42   0.001
sp|P0C2H6|RL27A_YEAST 60S ribosomal protein L27-A OS=Saccharomyc...    42   0.001
sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicu...    42   0.001
sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RP...    42   0.001
sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus G...    42   0.001
sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicu...    42   0.001
sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punc...    42   0.001
sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens G...    42   0.001
sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus co...    42   0.001
sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN...    42   0.001
sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus ...    42   0.001
sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon ...    42   0.001
sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=...    42   0.001
sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiar...    40   0.003
sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tubero...    40   0.004
sp|Q9P843|RL27_CANAL 60S ribosomal protein L27 OS=Candida albica...    38   0.018
sp|Q55BE6|RL27_DICDI 60S ribosomal protein L27 OS=Dictyostelium ...    36   0.052
sp|O74538|RL27B_SCHPO 60S ribosomal protein L27-B OS=Schizosacch...    35   0.089
sp|O14388|RL27A_SCHPO 60S ribosomal protein L27-A OS=Schizosacch...    34   0.26 

>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis
           thaliana GN=RPL27A PE=2 SV=1
          Length = 135

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 25/46 (54%), Positives = 29/46 (63%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLKNVV+ + + S              FEERFKTGKNRWFF+KLRF
Sbjct: 90  DLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135


>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis
           thaliana GN=RPL27C PE=2 SV=2
          Length = 135

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 24/46 (52%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK V T + L S               EERFKTGKNRWFF+KLRF
Sbjct: 90  DLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135


>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis
           thaliana GN=RPL27B PE=2 SV=2
          Length = 135

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 24/46 (52%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK V T + L S               EERFKTGKNRWFF+KLRF
Sbjct: 90  DLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135


>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum
           GN=RPL27 PE=2 SV=1
          Length = 135

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 23/46 (50%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK+ V  + L S               EERFKTGKNRWFF+KLRF
Sbjct: 90  DLKDAVVPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135


>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys
           stellata GN=RPL27 PE=2 SV=1
          Length = 134

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +1

Query: 79  LFEERFKTGKNRWFFSKLRF 138
           L EE+FKTGKNRWFF+KLRF
Sbjct: 115 LLEEKFKTGKNRWFFTKLRF 134


>sp|P91914|RL27_CAEEL 60S ribosomal protein L27 OS=Caenorhabditis
           elegans GN=rpl-27 PE=2 SV=1
          Length = 136

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 16/19 (84%), Positives = 19/19 (100%)
 Frame = +1

Query: 82  FEERFKTGKNRWFFSKLRF 138
           FEER+KTGKN+WFF+KLRF
Sbjct: 118 FEERYKTGKNKWFFTKLRF 136


>sp|P0C2H7|RL27B_YEAST 60S ribosomal protein L27-B OS=Saccharomyces
           cerevisiae GN=RPL27B PE=1 SV=1
          Length = 136

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   KNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           K+VV+TE  +               FEER + GKN+WFFSKLRF
Sbjct: 93  KSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136


>sp|P0C2H6|RL27A_YEAST 60S ribosomal protein L27-A OS=Saccharomyces
           cerevisiae GN=RPL27A PE=1 SV=1
          Length = 136

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 7   KNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           K+VV+TE  +               FEER + GKN+WFFSKLRF
Sbjct: 93  KSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136


>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus
           GN=Rpl27 PE=2 SV=2
          Length = 136

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 82  FEERFKTGKNRWFFSKLRF 138
           FEER+KTGKN+WFF KLRF
Sbjct: 118 FEERYKTGKNKWFFQKLRF 136


>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27
           PE=2 SV=1
          Length = 136

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 16/19 (84%), Positives = 18/19 (94%)
 Frame = +1

Query: 82  FEERFKTGKNRWFFSKLRF 138
           FEER+KTGKN+WFF KLRF
Sbjct: 118 FEERYKTGKNKWFFQKLRF 136
tr_hit_id A9SPG7
Definition tr|A9SPG7|A9SPG7_PHYPA 60S ribosomal protein L27 OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 57.4
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946448|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_K19, 5'
         (344 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SPG7|A9SPG7_PHYPA 60S ribosomal protein L27 OS=Physcomitrel...    57   4e-07
tr|A9TFR5|A9TFR5_PHYPA 60S ribosomal protein L27 OS=Physcomitrel...    57   5e-07
tr|B7FN57|B7FN57_MEDTR Putative uncharacterized protein OS=Medic...    54   4e-06
tr|B7FH51|B7FH51_MEDTR Putative uncharacterized protein OS=Medic...    54   4e-06
tr|A9TVF9|A9TVF9_PHYPA 60S ribosomal protein L27 OS=Physcomitrel...    54   4e-06
tr|A9SIT7|A9SIT7_PHYPA 60S ribosomal protein L27 OS=Physcomitrel...    54   4e-06
tr|A7P2T2|A7P2T2_VITVI 60S ribosomal protein L27 OS=Vitis vinife...    54   5e-06
tr|A9NQ84|A9NQ84_PICSI 60S ribosomal protein L27 OS=Picea sitche...    53   7e-06
tr|A6QRC8|A6QRC8_ARATH 60S ribosomal protein L27 OS=Arabidopsis ...    53   7e-06
tr|B3TLV4|B3TLV4_ELAGV 60S ribosomal protein L27 OS=Elaeis guine...    53   9e-06
tr|A9PAT1|A9PAT1_POPTR 60S ribosomal protein L27 OS=Populus tric...    52   1e-05
tr|Q6B4P9|Q6B4P9_CHAGO 60S ribosomal protein L27 OS=Chara globul...    52   2e-05
tr|A9P8D7|A9P8D7_POPTR 60S ribosomal protein L27 OS=Populus tric...    52   2e-05
tr|A9PBR8|A9PBR8_POPTR 60S ribosomal protein L27 OS=Populus tric...    51   3e-05
tr|A4RWV5|A4RWV5_OSTLU 60S ribosomal protein L27 OS=Ostreococcus...    51   3e-05
tr|Q9MAV8|Q9MAV8_PANGI 60S ribosomal protein L27 OS=Panax ginsen...    50   4e-05
tr|A7PWS1|A7PWS1_VITVI 60S ribosomal protein L27 OS=Vitis vinife...    49   1e-04
tr|Q0WRB8|Q0WRB8_ARATH 60S ribosomal protein L27 OS=Arabidopsis ...    49   1e-04
tr|A8IQC1|A8IQC1_CHLRE 60S ribosomal protein L27 OS=Chlamydomona...    49   1e-04
tr|A5C1Z2|A5C1Z2_VITVI 60S ribosomal protein L27 OS=Vitis vinife...    47   4e-04
tr|A9PB88|A9PB88_POPTR 60S ribosomal protein L27 OS=Populus tric...    46   0.001
tr|Q01A00|Q01A00_OSTTA 60S ribosomal protein L27 OS=Ostreococcus...    45   0.002
tr|Q6CFL3|Q6CFL3_YARLI 60S ribosomal protein L27 OS=Yarrowia lip...    44   0.004
tr|A8PKC6|A8PKC6_BRUMA 60S ribosomal protein L27 OS=Brugia malay...    44   0.005
tr|A8UFE8|A8UFE8_AREMA 60S ribosomal protein L27 OS=Arenicola ma...    43   0.009
tr|A8U9U2|A8U9U2_SIPNU 60S ribosomal protein L27 (Fragment) OS=S...    43   0.009
tr|Q6K4T1|Q6K4T1_ORYSJ 60S ribosomal protein L27 OS=Oryza sativa...    42   0.015
tr|B6TMH0|B6TMH0_MAIZE 60S ribosomal protein L27 OS=Zea mays PE=...    42   0.015
tr|B4FTA3|B4FTA3_MAIZE 60S ribosomal protein L27 OS=Zea mays PE=...    42   0.015
tr|B4FEE3|B4FEE3_MAIZE 60S ribosomal protein L27 OS=Zea mays PE=...    42   0.015

>tr|A9SPG7|A9SPG7_PHYPA 60S ribosomal protein L27 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_187092 PE=3 SV=1
          Length = 135

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 27/46 (58%), Positives = 31/46 (67%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLKN+VT +KL+S             + EERFKTGKNRWFFSKLRF
Sbjct: 90  DLKNIVTADKLESTASRVEARKASKTVLEERFKTGKNRWFFSKLRF 135


>tr|A9TFR5|A9TFR5_PHYPA 60S ribosomal protein L27 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_194649 PE=3 SV=1
          Length = 135

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/46 (58%), Positives = 30/46 (65%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLKN VT +KL+S             + EERFKTGKNRWFFSKLRF
Sbjct: 90  DLKNTVTADKLESTASRVESRKAAKAVLEERFKTGKNRWFFSKLRF 135


>tr|B7FN57|B7FN57_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 135

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/46 (58%), Positives = 29/46 (63%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK VVTT+ L S              FEERFKTGKNRWFF+KLRF
Sbjct: 90  DLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF 135


>tr|B7FH51|B7FH51_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 135

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 27/46 (58%), Positives = 29/46 (63%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK VVTT+ L S              FEERFKTGKNRWFF+KLRF
Sbjct: 90  DLKEVVTTDVLQSKDKKVTALKEAKKRFEERFKTGKNRWFFTKLRF 135


>tr|A9TVF9|A9TVF9_PHYPA 60S ribosomal protein L27 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_198656 PE=3 SV=1
          Length = 135

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK+ +T +KL+S             + EERFKTGKNRWFFSKLRF
Sbjct: 90  DLKSTLTADKLESTAGRVEARKGAKAVLEERFKTGKNRWFFSKLRF 135


>tr|A9SIT7|A9SIT7_PHYPA 60S ribosomal protein L27 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_165124 PE=3 SV=1
          Length = 135

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK+ VT +KL+S             + EERFKTGKNRWFF+KLRF
Sbjct: 90  DLKSTVTADKLESTASRVEARKGAKAVLEERFKTGKNRWFFTKLRF 135


>tr|A7P2T2|A7P2T2_VITVI 60S ribosomal protein L27 OS=Vitis vinifera
           GN=GSVIVT00030172001 PE=3 SV=1
          Length = 135

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 26/46 (56%), Positives = 29/46 (63%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK+VVT + L S              FEERFKTGKNRWFF+KLRF
Sbjct: 90  DLKDVVTVDALQSRDKKVTAAKETKARFEERFKTGKNRWFFTKLRF 135


>tr|A9NQ84|A9NQ84_PICSI 60S ribosomal protein L27 OS=Picea
           sitchensis PE=2 SV=1
          Length = 135

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLKNVV+ +KL++              FEERFK GKNRWFF+KLRF
Sbjct: 90  DLKNVVSFDKLETRDKKVAALKGVKASFEERFKAGKNRWFFTKLRF 135


>tr|A6QRC8|A6QRC8_ARATH 60S ribosomal protein L27 OS=Arabidopsis
           thaliana PE=2 SV=1
          Length = 135

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 25/46 (54%), Positives = 29/46 (63%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLKNVV+ + + S              FEERFKTGKNRWFF+KLRF
Sbjct: 90  DLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135


>tr|B3TLV4|B3TLV4_ELAGV 60S ribosomal protein L27 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 135

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 26/46 (56%), Positives = 29/46 (63%)
 Frame = +1

Query: 1   DLKNVVTTEKLDSXXXXXXXXXXXXGLFEERFKTGKNRWFFSKLRF 138
           DLK+VVT + L S              FEERFKTGKNRWFF+KLRF
Sbjct: 90  DLKDVVTLDVLQSRDKKVAACKETKARFEERFKTGKNRWFFTKLRF 135