DK946458 |
Clone id |
YMU02A01NGRL0012_L09 |
Library |
YMU02 |
Length |
566 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_L09. 5' end sequence. |
Accession |
DK946458 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL98Contig1 |
Sequence |
GTCTTTCTCTGCGGCAAAACTTCTGGAAAAGGAAGGGCTCCTGGCAAGCGAGGAAATCGA TTCTATAAGAACATTGGTTTGGGGTTTAAGACACCAAGAGAAGCTATTGAAGGTACATAC ATTGACAAGAAGTGCCCTTTTACGGGCAACGTTTCTATCCGAGGGCGCATTTTGACTGGG ACTGTTAACTGCGCAAAAATGACGAGGACAATAACTGTCAGGAGGGACTACTTGCATTTC GTGAAGAAATATCAAAGGTATGAGAAGAGGCATTCGAATTTGTCTGCCCACGTGTCTCCT TGCTTCCGTGTGAAAGAGGGGGACAAGGTTATTATCGGGCAGTGCCGGCCTCTTTCAAAG ACTGTAAGATTCAACGTCTTGAAGGTCTTTCCTATGGGAGCCGCAGAGGGTGGCAAGAAG GCATTCACTGCAATGTAGTGTACCGTAGTTTTCCATCGAACCTAATTTTTGTCTAAATTT CATGGGTACCTTGGACTCTTGTGCGAAGGTCACTATTTTGTGAAGCTAATGTTCACTGTC GCTTCCAAGAGCTGAGTTTTTTCAAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O65569 |
Definition |
sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis thaliana |
Align length |
145 |
Score (bit) |
245.0 |
E-value |
1.0e-64 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S6F7 |
Definition |
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
146 |
Score (bit) |
256.0 |
E-value |
5.0e-67 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946458|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_L09, 5' (566 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 256 5e-67 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 256 5e-67 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 252 1e-65 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 249 6e-65 tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 249 1e-64 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 248 1e-64 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 248 2e-64 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 246 6e-64 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 246 6e-64 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 245 1e-63 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 243 7e-63 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 243 7e-63 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 243 7e-63 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 241 2e-62 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 241 2e-62 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 240 3e-62 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 239 8e-62 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 239 1e-61 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 235 1e-60 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 235 1e-60 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 235 1e-60 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 234 2e-60 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 234 2e-60 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 234 2e-60 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 229 8e-59 tr|A3BQN0|A3BQN0_ORYSJ Putative uncharacterized protein OS=Oryza... 225 1e-57 tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 222 1e-56 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 217 4e-55 tr|Q209Q5|Q209Q5_9CHLO 40S ribosomal protein S11 OS=Chlamydomona... 215 2e-54 tr|Q7SFZ2|Q7SFZ2_NEUCR Putative uncharacterized protein OS=Neuro... 200 5e-50
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 256 bits (655), Expect = 5e-67 Identities = 124/146 (84%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFL K S KG+A GK G RF+KN+GLGFKTPREAIEGTYIDKKCPFTG+VSIRGRILTG Sbjct: 15 VFLSTKASSKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFTGDVSIRGRILTG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 TVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQCRPLSK Sbjct: 75 TVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEGG-KKAFTAM 435 TVRFNVLKV PMGA++GG KK FTA+ Sbjct: 135 TVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 256 bits (655), Expect = 5e-67 Identities = 124/146 (84%), Positives = 134/146 (91%), Gaps = 1/146 (0%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFL K S KG+A GK G RF+KN+GLGFKTPREAIEGTYIDKKCPFTG+VSIRGRILTG Sbjct: 15 VFLSTKASAKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFTGDVSIRGRILTG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 TVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGDKVIIGQCRPLSK Sbjct: 75 TVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGDKVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEGG-KKAFTAM 435 TVRFNVLKV PMGA++GG KK FTA+ Sbjct: 135 TVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 252 bits (643), Expect = 1e-65 Identities = 119/145 (82%), Positives = 130/145 (89%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFLC K SGKG+ PGK GNRF+KNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRIL G Sbjct: 15 VFLCSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLH+V+KYQRYEKRHSN++AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHYVRKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEGGKKAFTAM 435 TVRFNVLKV P G+ GGKKAF A+ Sbjct: 135 TVRFNVLKVIPAGSKGGGKKAFAAV 159
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 249 bits (637), Expect = 6e-65 Identities = 119/146 (81%), Positives = 130/146 (89%), Gaps = 1/146 (0%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFLC K SGKG+ PGK GNRF+K++GLGFKTPREAI+GTYIDKKCPFTGNVSIRGRIL G Sbjct: 15 VFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEG-GKKAFTAM 435 TVRFNVLKV P G++ G GKKAFT M Sbjct: 135 TVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 249 bits (635), Expect = 1e-64 Identities = 118/145 (81%), Positives = 128/145 (88%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFL SGKG+ PGK GNRF+KNIGLGFKTPR+AIEGTYIDKKCPFTGNVSIRGRIL G Sbjct: 15 VFLSSNKSGKGKRPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLH++KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRP+SK Sbjct: 75 TCHSAKMQRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISK 134
Query: 361 TVRFNVLKVFPMGAAEGGKKAFTAM 435 TVRFNVLKV P GAA GGKKAFT + Sbjct: 135 TVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 248 bits (634), Expect = 1e-64 Identities = 118/144 (81%), Positives = 127/144 (88%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFLC K SGKG+ PGK GNRF+KNIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G Sbjct: 15 VFLCPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEGGKKAFTA 432 TVRFNV+KV P G+ GGKKAF A Sbjct: 135 TVRFNVIKVIPAGSTGGGKKAFIA 158
>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 248 bits (633), Expect = 2e-64 Identities = 119/146 (81%), Positives = 129/146 (88%), Gaps = 1/146 (0%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFLC K SGKG+ PGK GNRF+K++GLGFKTPREA EGTYIDKKCPFTGNVSIRGRIL G Sbjct: 15 VFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCPFTGNVSIRGRILAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEG-GKKAFTAM 435 TVRFNVLKV P G++ G GKKAFT M Sbjct: 135 TVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 163
Score = 246 bits (628), Expect = 6e-64 Identities = 118/146 (80%), Positives = 130/146 (89%), Gaps = 1/146 (0%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFLC K SGKG+ PGK GNRF+K+IGLGFKTPREAIEG Y+DKKCPFTGNVSIRGRIL G Sbjct: 15 VFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGAYVDKKCPFTGNVSIRGRILAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLH+VKKYQRYEKRHSN++AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIAAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEG-GKKAFTAM 435 TVRFNVLKV P G+ G GKKAFTA+ Sbjct: 135 TVRFNVLKVIPAGSKGGSGKKAFTAI 160
>tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 160
Score = 246 bits (628), Expect = 6e-64 Identities = 118/146 (80%), Positives = 129/146 (88%), Gaps = 1/146 (0%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFL K SGKG+ PGK GNRF+KN+GLGFKTP+EA++GTYIDKKCPFTGNVSIRGRIL G Sbjct: 15 VFLSSKKSGKGKRPGKGGNRFFKNVGLGFKTPKEAVQGTYIDKKCPFTGNVSIRGRILAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T AKMTRTI VRRDYLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEG-GKKAFTAM 435 TVRFNVLKV P G++ G KKAFTA+ Sbjct: 135 TVRFNVLKVIPAGSSSGSAKKAFTAI 160
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 245 bits (625), Expect = 1e-63 Identities = 117/144 (81%), Positives = 127/144 (88%) Frame = +1
Query: 1 VFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILTG 180 VFL K SGKG+ PGK GNRF+K+IGLGFKTPREAIEGTYIDKKCPFTG VSIRGRI+ G Sbjct: 15 VFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAG 74
Query: 181 TVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGDKVIIGQCRPLSK 360 T + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD VIIGQCRPLSK Sbjct: 75 TCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSK 134
Query: 361 TVRFNVLKVFPMGAAEGGKKAFTA 432 TVRFNV+KV P G+A GKKAFTA Sbjct: 135 TVRFNVVKVIPAGSAAAGKKAFTA 158
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