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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946461
Clone id YMU02A01NGRL0012_L12
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_L12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGGGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CACTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAAACTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAA
AATAAAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A1VDD3
Definition sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Align length 38
Score (bit) 29.6
E-value 6.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946461|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_L12, 5'
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase OS=Des...    30   6.7  
sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase OS=Des...    30   6.7  

>sp|A1VDD3|DAPAT_DESVV LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=dapL PE=3 SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 165 NLVTHSLQELGKIVTKQNCFGTPRNTWFNFYFRGDK*R 278
           + VT  LQE G +VT  N FGTP   +F      D  R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377


>sp|Q72BI1|DAPAT_DESVH LL-diaminopimelate aminotransferase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=dapL PE=3 SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 165 NLVTHSLQELGKIVTKQNCFGTPRNTWFNFYFRGDK*R 278
           + VT  LQE G +VT  N FGTP   +F      D  R
Sbjct: 340 DFVTRVLQETGVVVTPGNGFGTPGEGFFRISLTVDNAR 377
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 33.1
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946461|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_L12, 5'
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    33   7.0  
tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley...    33   7.2  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSPNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R+   Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
           GN=rpl16 PE=3 SV=1
          Length = 138

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 268 INKEKKLWVDV*DS*LIVTKPQRINLGKKVGINK--SGFVKIIEHLF 402
           + K+ K+W+++  S +I  KPQ + +GK  G  K  + F+K  E LF
Sbjct: 59  LKKQAKIWINIFPSKMITKKPQEVRMGKGKGYVKYWAYFIKKNEILF 105