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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946462
Clone id YMU02A01NGRL0012_L13
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_L13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATGGTTCATCGATGAATAAATCTGAACAAGGTACAGCTGCAGAATGGGTTGACCAGGAT
GAACTGGGGGTCTATGTTACCCTAGTAGTGCTTCCCAATGGCAGCAGAGATTTGAGGAGA
GTAAGATTCAGTAGAAGGCGATTTACTGAAAAACAGGCGGAGCTGTGGTGGACAGAAAAT
CGAGCAAGAGTGTTTGAAAAATATAATGTGAAGAGTATGGACAAATCAACCATCTTTGAG
GCCAGGACAGGAAGGGAATGAACAACTATTTGTGGTTATATTGGCTGCCAGAAGTTTTGT
CACCTTTGAGAAGCGTGGATTAGGGAATTGGGATCAGGAAGCTGAGGGAAGACCTACAAA
GTCCGGTAATCACCTGGTAGCAGCAAGTTTCCCAGCATACACACTGCGAATGTGAAGAAC
GACGCCGGATGGTAGCTTTTTGAGGGAAGTGCCCTTTCTCTGAGGAGAAGGGGAGAGACG
AATTAAAAGGACCAGGATCAATTCAGATTCTGCTGGAGTGCCCC
■■Homology search results ■■ -
sp_hit_id A6T345
Definition sp|A6T345|LIPA_JANMA Lipoyl synthase OS=Janthinobacterium sp. (strain Marseille)
Align length 66
Score (bit) 31.2
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946462|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_L13, 5'
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6T345|LIPA_JANMA Lipoyl synthase OS=Janthinobacterium sp. (s...    31   3.1  
sp|P53853|VPS75_YEAST Vacuolar protein sorting-associated protei...    31   4.1  
sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein alpha c...    30   7.0  
sp|A4G9C6|LIPA_HERAR Lipoyl synthase OS=Herminiimonas arsenicoxy...    30   9.1  

>sp|A6T345|LIPA_JANMA Lipoyl synthase OS=Janthinobacterium sp.
           (strain Marseille) GN=lipA PE=3 SV=1
          Length = 331

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 366 PDFVGLPSAS*SQFPNPRFSKVTKLLAANITTNSCSFPSCPGLKDG*FVHTLHIIFFKHS 187
           PD++ + +AS    P+ RF ++  +L AN     C   SCP + +     T   +     
Sbjct: 41  PDWIRVKAAS----PSTRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDK 96

Query: 186 CSIFCP 169
           C+  CP
Sbjct: 97  CTRRCP 102


>sp|P53853|VPS75_YEAST Vacuolar protein sorting-associated protein
           75 OS=Saccharomyces cerevisiae GN=VPS75 PE=1 SV=1
          Length = 264

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 125 DSVEGDLLKNRRSCGGQKIEQECLKNIM*RVWTNQPSLRPGQE 253
           DS+  DL+K++RS  G+K  ++ +K I    W     L+PG+E
Sbjct: 153 DSINPDLIKDKRSPEGKKKYRQGMKTIF--GWFRWTGLKPGKE 193


>sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein alpha
           chain OS=Clostridium pasteurianum GN=nifD PE=1 SV=2
          Length = 534

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 324 PNPRFSKVTKLLAANITTNSCSFPSCPGLKDG*FVHTLHIIFFKHSCSIF 175
           PNP     T+ +   IT   C++  C G+  G     +HI      CS +
Sbjct: 33  PNPEIVANTRTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSFY 82


>sp|A4G9C6|LIPA_HERAR Lipoyl synthase OS=Herminiimonas
           arsenicoxydans GN=lipA PE=3 SV=1
          Length = 335

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -3

Query: 366 PDFVGLPSAS*SQFPNPRFSKVTKLLAANITTNSCSFPSCPGLKDG*FVHTLHIIFFKHS 187
           PD++ + + S    P+ RF ++  +L AN     C   SCP + +     T   +     
Sbjct: 45  PDWIRVKAGS----PSTRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDK 100

Query: 186 CSIFCP 169
           C+  CP
Sbjct: 101 CTRRCP 106
tr_hit_id A7PQZ5
Definition tr|A7PQZ5|A7PQZ5_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera
Align length 78
Score (bit) 82.4
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946462|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_L13, 5'
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PQZ5|A7PQZ5_VITVI Chromosome chr6 scaffold_25, whole genome...    82   1e-14
tr|B8A3R7|B8A3R7_MAIZE Putative uncharacterized protein OS=Zea m...    80   8e-14
tr|Q0DIJ3|Q0DIJ3_ORYSJ Os05g0384800 protein OS=Oryza sativa subs...    79   1e-13
tr|Q5JL00|Q5JL00_ORYSJ Putative ZR1 protein OS=Oryza sativa subs...    77   5e-13
tr|B8A981|B8A981_ORYSI Putative uncharacterized protein OS=Oryza...    77   5e-13
tr|A6N0Y2|A6N0Y2_ORYSI Ran gtpase binding protein (Fragment) OS=...    77   5e-13
tr|A6N0M2|A6N0M2_ORYSI Zinc finger protein (Fragment) OS=Oryza s...    77   5e-13
tr|A3A1K7|A3A1K7_ORYSJ Putative uncharacterized protein OS=Oryza...    77   5e-13
tr|A7Q5G8|A7Q5G8_VITVI Chromosome undetermined scaffold_53, whol...    75   2e-12
tr|B8AZS5|B8AZS5_ORYSI Putative uncharacterized protein OS=Oryza...    74   4e-12
tr|A5BGE9|A5BGE9_VITVI Putative uncharacterized protein OS=Vitis...    72   1e-11
tr|Q9FHX1|Q9FHX1_ARATH TMV resistance protein-like OS=Arabidopsi...    72   2e-11
tr|Q947D2|Q947D2_ARATH Zinc finger protein OS=Arabidopsis thalia...    72   2e-11
tr|Q8W111|Q8W111_ARATH At1g76950/F22K20_5 OS=Arabidopsis thalian...    72   2e-11
tr|Q56WW7|Q56WW7_ARATH Zinc finger protein (Fragment) OS=Arabido...    72   2e-11
tr|Q3E9B7|Q3E9B7_ARATH Uncharacterized protein At5g19420.1 OS=Ar...    72   2e-11
tr|O49281|O49281_ARATH F22K20.5 protein OS=Arabidopsis thaliana ...    72   2e-11
tr|Q94CK7|Q94CK7_ARATH Putative uncharacterized protein At5g1235...    70   5e-11
tr|A7QMY2|A7QMY2_VITVI Chromosome undetermined scaffold_129, who...    70   6e-11
tr|A9S6B1|A9S6B1_PHYPA Predicted protein OS=Physcomitrella paten...    68   3e-10
tr|Q65XH7|Q65XH7_ORYSJ Os05g0106700 protein OS=Oryza sativa subs...    66   1e-09
tr|A2XZH5|A2XZH5_ORYSI Putative uncharacterized protein OS=Oryza...    66   1e-09
tr|Q947C9|Q947C9_TRIMO Putative chromosome condensation factor O...    65   2e-09
tr|Q5EWZ0|Q5EWZ0_WHEAT Putative chromosome condensation factor O...    65   2e-09
tr|A9SW10|A9SW10_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|B8A9M0|B8A9M0_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A9SW15|A9SW15_PHYPA Predicted protein OS=Physcomitrella paten...    65   3e-09
tr|Q7XTM0|Q7XTM0_ORYSJ Os04g0686200 protein OS=Oryza sativa subs...    63   8e-09
tr|Q259N3|Q259N3_ORYSA H0723C07.10 protein OS=Oryza sativa GN=H0...    63   8e-09
tr|B8ART6|B8ART6_ORYSI Putative uncharacterized protein OS=Oryza...    63   8e-09

>tr|A7PQZ5|A7PQZ5_VITVI Chromosome chr6 scaffold_25, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00022255001
            PE=4 SV=1
          Length = 1101

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/78 (50%), Positives = 49/78 (62%)
 Frame = +1

Query: 1    DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
            +GS   +SE     EWV+QDE GVY+TL  LP G             F+EKQAE WW EN
Sbjct: 1015 NGSRTKESEHRNDNEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAEN 1074

Query: 181  RARVFEKYNVKSMDKSTI 234
            RARV E+YNV+ +DKS++
Sbjct: 1075 RARVHERYNVRMIDKSSV 1092


>tr|B8A3R7|B8A3R7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 159

 Score = 79.7 bits (195), Expect = 8e-14
 Identities = 38/77 (49%), Positives = 49/77 (63%)
 Frame = +1

Query: 1   DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
           +GS    +E    AEWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 73  NGSRPPDAESCHDAEWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQEN 132

Query: 181 RARVFEKYNVKSMDKST 231
           RARV+++YNV+ +DKST
Sbjct: 133 RARVYQQYNVRVVDKST 149


>tr|Q0DIJ3|Q0DIJ3_ORYSJ Os05g0384800 protein OS=Oryza sativa subsp.
            japonica GN=Os05g0384800 PE=4 SV=1
          Length = 1086

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 36/76 (47%), Positives = 49/76 (64%)
 Frame = +1

Query: 1    DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
            +G+ +  S+    +EWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 1001 NGTRLPDSDSKHESEWVEQDEPGVYITLTALPGGTRDLKRVRFSRKRFSETQAEQWWQEN 1060

Query: 181  RARVFEKYNVKSMDKS 228
            RARV+E+YNV+ +DKS
Sbjct: 1061 RARVYEQYNVRVVDKS 1076


>tr|Q5JL00|Q5JL00_ORYSJ Putative ZR1 protein OS=Oryza sativa subsp.
            japonica GN=P0431G06.5 PE=4 SV=1
          Length = 1091

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 1    DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
            +GS + ++E    AEWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 1005 NGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQEN 1064

Query: 181  RARVFEKYNVKSMDKS 228
            R RV++ YNV+ ++KS
Sbjct: 1065 RTRVYQHYNVRMVEKS 1080


>tr|B8A981|B8A981_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_05225 PE=4 SV=1
          Length = 1093

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 1    DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
            +GS + ++E    AEWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 1007 NGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQEN 1066

Query: 181  RARVFEKYNVKSMDKS 228
            R RV++ YNV+ ++KS
Sbjct: 1067 RTRVYQHYNVRMVEKS 1082


>tr|A6N0Y2|A6N0Y2_ORYSI Ran gtpase binding protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 100

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 1   DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
           +GS + ++E    AEWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 14  NGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQEN 73

Query: 181 RARVFEKYNVKSMDKS 228
           R RV++ YNV+ ++KS
Sbjct: 74  RTRVYQHYNVRMVEKS 89


>tr|A6N0M2|A6N0M2_ORYSI Zinc finger protein (Fragment) OS=Oryza
           sativa subsp. indica PE=2 SV=1
          Length = 171

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 1   DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
           +GS + ++E    AEWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 85  NGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQEN 144

Query: 181 RARVFEKYNVKSMDKS 228
           R RV++ YNV+ ++KS
Sbjct: 145 RTRVYQHYNVRMVEKS 160


>tr|A3A1K7|A3A1K7_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_004679 PE=4 SV=1
          Length = 1086

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 1    DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTEN 180
            +GS + ++E    AEWV+QDE GVY+TL  LP G+            F+E QAE WW EN
Sbjct: 1000 NGSRLPEAESCHEAEWVEQDEPGVYITLTALPGGARDLKRVRFSRKRFSETQAEQWWQEN 1059

Query: 181  RARVFEKYNVKSMDKS 228
            R RV++ YNV+ ++KS
Sbjct: 1060 RTRVYQHYNVRMVEKS 1075


>tr|A7Q5G8|A7Q5G8_VITVI Chromosome undetermined scaffold_53, whole
            genome shotgun sequence OS=Vitis vinifera
            GN=GSVIVT00030935001 PE=4 SV=1
          Length = 1124

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 37/77 (48%), Positives = 45/77 (58%)
 Frame = +1

Query: 22   SEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTENRARVFEK 201
            +E     EWV+QDE GVY+TLV LP G             F+EKQAE WW  NR RV+++
Sbjct: 1045 AEPYQGVEWVEQDEPGVYITLVSLPGGVKDLKRVRFSRKRFSEKQAEQWWAANRVRVYQQ 1104

Query: 202  YNVKSMDKSTIFEARTG 252
            YNV  +DKS I   R G
Sbjct: 1105 YNVPLVDKSCIGIGREG 1121


>tr|B8AZS5|B8AZS5_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_20559 PE=4 SV=1
          Length = 1131

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 33/75 (44%), Positives = 46/75 (61%)
 Frame = +1

Query: 4    GSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGSXXXXXXXXXXXXFTEKQAELWWTENR 183
            GS + ++E    AEWV++DE GVY+TL  LP G+            F E QA+ WW ENR
Sbjct: 987  GSRLPEAESCHEAEWVEEDEPGVYITLTTLPGGARDIKRVWFSRRRFNEAQADQWWLENR 1046

Query: 184  ARVFEKYNVKSMDKS 228
             RV++ YNV+ ++KS
Sbjct: 1047 TRVYQHYNVRMVEKS 1061



 Score = 36.6 bits (83), Expect = 0.78
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 1    DGSSMNKSEQGTAAEWVDQDELGVYVTLVVLPNGS 105
            D   + ++E    AEWV+QD  GVY+TL  LP G+
Sbjct: 1066 DNEILPEAESCHEAEWVEQDIPGVYITLTTLPGGA 1100