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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946468
Clone id YMU02A01NGRL0012_L19
Library
Length 696
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_L19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAAATGGGGGAAGAAGAGGGGCCAAAAAAGAAGCCATGGTGGGCGATCGACAAGGAGGC
TTGGAGACAGCATTTCCATTTAATCTTTGATATGGCCAGCGTTGCTAAAGGGAGAGACAA
ACCTCTGAAGCCCTGGTCCGACGCAGATGTTGAAGAATTCATTCACTCCGATCCAGTTTA
TGGACCCCAGTTAAAGCTTGTTAGAGAAGCAGCACAGATATCAGCGGGAGGAGCTGTTGT
TGGAGGGCTAACTACAACAGCTGTGGTGGCAAGATATTCAAGGGCTCCACATGGATTACT
ACTTTCACTTGTGGCGGGTGCGATTGTTGGATGGAGCGTAGCACAAGAGGGTGCCAGGCT
CGCTTACGGTCTACATAAGATTGATTGCATGGATACGAATTTGAGGTTTCTCGATTGGTG
GAAGCACAAGACCGAAGGTTGAAGTAGAGCGGCTGTGGAAAAGTTGTCCAAAGAACTCGA
ATTTAGGTTAAGAATTCAATAAACCTCTCGGGTGTATGCTTTACATTCATCACAGGCTGG
TATAGAAGTGTAGCAAAGTCCGTAGATCACAAGGCGGGTGGGAATAATGAACCATTTTTT
ATTTGAGGAATTACCAATGTGGTGCAATCCTTTATCTTCCCCCATCTGTACCTAATGGCC
CTTCCTTTCCTTCCCCAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7N577
Definition sp|Q7N577|LUXC_PHOLL Acyl-CoA reductase OS=Photorhabdus luminescens subsp. laumondii
Align length 41
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946468|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_L19, 5'
         (676 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7N577|LUXC_PHOLL Acyl-CoA reductase OS=Photorhabdus luminesc...    33   1.4  
sp|Q5R989|MTMRC_PONAB Myotubularin-related protein 12 OS=Pongo a...    32   2.4  
sp|Q9C0I1|MTMRC_HUMAN Myotubularin-related protein 12 OS=Homo sa...    32   2.4  
sp|P23113|LUXC_PHOLU Acyl-CoA reductase OS=Photorhabdus luminesc...    30   8.9  

>sp|Q7N577|LUXC_PHOLL Acyl-CoA reductase OS=Photorhabdus luminescens
           subsp. laumondii GN=luxC PE=3 SV=1
          Length = 480

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 411 SIGGSTRPKVEVERLWKSCPKNSNLG*EFNKPLGCMLYIHH 533
           S+    + +V+V + W      SN G EFN+PLG  +Y+HH
Sbjct: 339 SLFAGLKVEVDVHQRWMII--ESNAGVEFNQPLGRCVYLHH 377


>sp|Q5R989|MTMRC_PONAB Myotubularin-related protein 12 OS=Pongo
           abelii GN=MTMR12 PE=2 SV=1
          Length = 747

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 481 FEFFGQLFHSRSTSTFGLVLPPIEKPQIRIHA 386
           F  F   +HS+ST   GL+LP IE P+I++ A
Sbjct: 609 FREFYDSWHSKSTDYHGLLLPHIEGPEIKVWA 640


>sp|Q9C0I1|MTMRC_HUMAN Myotubularin-related protein 12 OS=Homo
           sapiens GN=MTMR12 PE=1 SV=2
          Length = 747

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 481 FEFFGQLFHSRSTSTFGLVLPPIEKPQIRIHA 386
           F  F   +HS+ST   GL+LP IE P+I++ A
Sbjct: 609 FREFYDSWHSKSTDYHGLLLPHIEGPEIKVWA 640


>sp|P23113|LUXC_PHOLU Acyl-CoA reductase OS=Photorhabdus luminescens
           GN=luxC PE=3 SV=2
          Length = 480

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 435 KVEVERLWKSCPKNSNLG*EFNKPLGCMLYIHH 533
           KVEV+   +     SN G E N+PLG  +Y+HH
Sbjct: 345 KVEVDVHQRWMVIESNAGVELNQPLGRCVYLHH 377
tr_hit_id A9U0W1
Definition tr|A9U0W1|A9U0W1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 129
Score (bit) 140.0
E-value 6.0e-32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946468|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_L19, 5'
         (676 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U0W1|A9U0W1_PHYPA Predicted protein OS=Physcomitrella paten...   140   6e-32
tr|A9S3M4|A9S3M4_PHYPA Predicted protein OS=Physcomitrella paten...   133   1e-29
tr|A9NQR3|A9NQR3_PICSI Putative uncharacterized protein OS=Picea...   112   2e-23
tr|Q6ZCC4|Q6ZCC4_ORYSJ Os08g0112800 protein OS=Oryza sativa subs...   106   1e-21
tr|A2YQL0|A2YQL0_ORYSI Putative uncharacterized protein OS=Oryza...   106   2e-21
tr|A9NM90|A9NM90_PICSI Putative uncharacterized protein OS=Picea...   104   6e-21
tr|A7Q1H5|A7Q1H5_VITVI Chromosome chr7 scaffold_44, whole genome...   103   8e-21
tr|B8A3B3|B8A3B3_MAIZE Putative uncharacterized protein OS=Zea m...   102   2e-20
tr|B4FL77|B4FL77_MAIZE Putative uncharacterized protein OS=Zea m...   102   2e-20
tr|Q941A6|Q941A6_ARATH At1g08480/T27G7_10 OS=Arabidopsis thalian...   100   1e-19
tr|A9P8C2|A9P8C2_POPTR Putative uncharacterized protein OS=Popul...    89   2e-16
tr|Q1EMM1|Q1EMM1_PLAMJ Putative uncharacterized protein (Fragmen...    69   3e-10
tr|B8APW6|B8APW6_ORYSI Putative uncharacterized protein OS=Oryza...    56   2e-06
tr|A5C5J9|A5C5J9_VITVI Putative uncharacterized protein OS=Vitis...    48   5e-04
tr|B3RYS7|B3RYS7_TRIAD Putative uncharacterized protein OS=Trich...    35   3.3  
tr|Q013F8|Q013F8_OSTTA Ubiquitin system component Cue domain-con...    35   4.3  
tr|B8BRV4|B8BRV4_THAPS Predicted protein OS=Thalassiosira pseudo...    34   7.4  

>tr|A9U0W1|A9U0W1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_110635 PE=4 SV=1
          Length = 141

 Score =  140 bits (354), Expect = 6e-32
 Identities = 66/129 (51%), Positives = 87/129 (67%)
 Frame = +2

Query: 44  AIDKEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQIS 223
           AIDK AWR+ F   +  AS+++ RD PL PWS++DV+EFI+SDPVYGPQLKLVR+ A I+
Sbjct: 11  AIDKAAWREVFSPFYKFASISERRDTPLPPWSESDVQEFINSDPVYGPQLKLVRQGATIA 70

Query: 224 XXXXXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNL 403
                           RYS+   G + + + GA + W+VA+EGA L  GL+K +CMDTNL
Sbjct: 71  NVGALVGGLATAGIALRYSKNLPGAVGAFLGGAAMSWAVAEEGANLGLGLYKFNCMDTNL 130

Query: 404 RFLDWWKHK 430
           RFLDWW+ K
Sbjct: 131 RFLDWWERK 139


>tr|A9S3M4|A9S3M4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_162641 PE=4 SV=1
          Length = 141

 Score =  133 bits (334), Expect = 1e-29
 Identities = 63/129 (48%), Positives = 81/129 (62%)
 Frame = +2

Query: 44  AIDKEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQIS 223
           AIDK AWR+ F   F   S++  RD PL PWS+ADV+EFI SDPVYGP+LK VR+ A I+
Sbjct: 11  AIDKAAWREAFEPFFKFKSISDHRDTPLPPWSEADVQEFIDSDPVYGPRLKQVRQGATIA 70

Query: 224 XXXXXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNL 403
                           RYS+   G L + + G  + W+VA+EGA  A GL+K +CMD NL
Sbjct: 71  NYGALVGGLATAGVAFRYSKNIPGALGAFLGGTAMSWAVAEEGANFALGLYKFNCMDVNL 130

Query: 404 RFLDWWKHK 430
           +FLDWW+ K
Sbjct: 131 KFLDWWERK 139


>tr|A9NQR3|A9NQR3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 149

 Score =  112 bits (281), Expect = 2e-23
 Identities = 57/131 (43%), Positives = 76/131 (58%)
 Frame = +2

Query: 47  IDKEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISX 226
           + K+ W++ F  +     +  GRDKPL  W+DADVEEF+ SDPVYGPQLKL R+AA+I+ 
Sbjct: 18  VRKQYWKERFSYMNKYKQIF-GRDKPLPRWTDADVEEFMQSDPVYGPQLKLTRQAAKIAA 76

Query: 227 XXXXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLR 406
                          +YSR   G +LS  AGA  GW   +E A     L+K D MD  L+
Sbjct: 77  TGSVIGAVSTAGVSWKYSRHGIGAILSFGAGAAFGWVFGKEIANHTLRLYKFDSMDAQLK 136

Query: 407 FLDWWKHKTEG 439
           F +WW+ K+EG
Sbjct: 137 FFEWWEKKSEG 147


>tr|Q6ZCC4|Q6ZCC4_ORYSJ Os08g0112800 protein OS=Oryza sativa subsp.
           japonica GN=P0498H04.25 PE=2 SV=1
          Length = 142

 Score =  106 bits (265), Expect = 1e-21
 Identities = 56/129 (43%), Positives = 73/129 (56%)
 Frame = +2

Query: 53  KEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISXXX 232
           K  W ++F  + D      GRDKPL  W+DADV+EFI SDPVYGPQLK +RE+ + +   
Sbjct: 11  KAHWAKNFSFL-DYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRKFALGG 69

Query: 233 XXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLRFL 412
                        +YS+APHG++L+   GAI G  V  E A   Y L+K D    NLRF+
Sbjct: 70  ALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGANLRFI 129

Query: 413 DWWKHKTEG 439
            WW+ K  G
Sbjct: 130 YWWEDKVAG 138


>tr|A2YQL0|A2YQL0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27576 PE=4 SV=1
          Length = 142

 Score =  106 bits (264), Expect = 2e-21
 Identities = 56/129 (43%), Positives = 73/129 (56%)
 Frame = +2

Query: 53  KEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISXXX 232
           K  W ++F  + D      GRDKPL  W+DADV+EFI SDPVYGPQLK +RE+ + +   
Sbjct: 11  KAHWAKNFAFL-DYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRKFALGG 69

Query: 233 XXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLRFL 412
                        +YS+APHG++L+   GAI G  V  E A   Y L+K D    NLRF+
Sbjct: 70  ALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGANLRFI 129

Query: 413 DWWKHKTEG 439
            WW+ K  G
Sbjct: 130 YWWEDKVAG 138


>tr|A9NM90|A9NM90_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 147

 Score =  104 bits (259), Expect = 6e-21
 Identities = 55/131 (41%), Positives = 74/131 (56%)
 Frame = +2

Query: 47  IDKEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISX 226
           + K+ W++ F  +     +  GRDKPL  W+DADVEEF+ SDPVYGPQ  L R+AA+I+ 
Sbjct: 18  VRKQYWKERFSYMNKYKQIF-GRDKPLPRWTDADVEEFMQSDPVYGPQ--LTRQAAKIAA 74

Query: 227 XXXXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLR 406
                          +YSR   G +LS  AGA  GW   +E A     L+K D MD  L+
Sbjct: 75  TGSVIGAVSTAGVSWKYSRHGIGAILSFGAGAAFGWVFGKEIANHTLRLYKFDSMDAQLK 134

Query: 407 FLDWWKHKTEG 439
           F +WW+ K+EG
Sbjct: 135 FFEWWEKKSEG 145


>tr|A7Q1H5|A7Q1H5_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028466001
           PE=4 SV=1
          Length = 146

 Score =  103 bits (258), Expect = 8e-21
 Identities = 51/129 (39%), Positives = 73/129 (56%)
 Frame = +2

Query: 53  KEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISXXX 232
           K+ W + F ++ + A     RDKP+  WSD+DVEEFI SDPVYGP L+  REAA+ +   
Sbjct: 17  KDYWGERFAILDNYAKFVN-RDKPIPKWSDSDVEEFIASDPVYGPTLRTTREAAKFAVAG 75

Query: 233 XXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLRFL 412
                        +YSR+PHG  LS  AG + G +  QE A     L+++D +   ++FL
Sbjct: 76  AVIGAVSTAAVSWKYSRSPHGAALSFAAGGVFGVTFGQEFASHWLQLYRLDTLGAEVKFL 135

Query: 413 DWWKHKTEG 439
           +WW+ K  G
Sbjct: 136 EWWERKIGG 144


>tr|B8A3B3|B8A3B3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score =  102 bits (255), Expect = 2e-20
 Identities = 54/129 (41%), Positives = 73/129 (56%)
 Frame = +2

Query: 53  KEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISXXX 232
           K+ W  +F  + D      GR +PL  WSDADV+EFI SDPVYGPQLK +RE+ + +   
Sbjct: 11  KQHWASNFAFL-DYFKKVYGRAEPLPKWSDADVDEFIASDPVYGPQLKALRESRKFALAG 69

Query: 233 XXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLRFL 412
                        +YS+APHG+LL+   GAI G  +  E A   Y L+++D    NLRF+
Sbjct: 70  ALVGAAHLGGVALKYSKAPHGVLLATGFGAITGAVLGSEVADHWYQLYEMDKQGANLRFI 129

Query: 413 DWWKHKTEG 439
            WW+ K  G
Sbjct: 130 YWWEDKVSG 138


>tr|B4FL77|B4FL77_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score =  102 bits (255), Expect = 2e-20
 Identities = 54/129 (41%), Positives = 73/129 (56%)
 Frame = +2

Query: 53  KEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISXXX 232
           K+ W  +F  + D      GR +PL  WSDADV+EFI SDPVYGPQLK +RE+ + +   
Sbjct: 11  KQHWASNFAFL-DYFKKVYGRAEPLPKWSDADVDEFIASDPVYGPQLKALRESRKFALAG 69

Query: 233 XXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLRFL 412
                        +YS+APHG+LL+   GAI G  +  E A   Y L+++D    NLRF+
Sbjct: 70  ALVGAAHLGGVALKYSKAPHGVLLATGFGAITGAVLGSEVADHWYQLYEMDKQGANLRFI 129

Query: 413 DWWKHKTEG 439
            WW+ K  G
Sbjct: 130 YWWEDKVSG 138


>tr|Q941A6|Q941A6_ARATH At1g08480/T27G7_10 OS=Arabidopsis thaliana
           GN=At1g08480 PE=2 SV=1
          Length = 142

 Score = 99.8 bits (247), Expect = 1e-19
 Identities = 48/128 (37%), Positives = 66/128 (51%)
 Frame = +2

Query: 53  KEAWRQHFHLIFDMASVAKGRDKPLKPWSDADVEEFIHSDPVYGPQLKLVREAAQISXXX 232
           K+ W        +     K RD PL  WS +DVEEFI SDPV+GP LK  REA       
Sbjct: 16  KDFWSDRLSFFENYTRFTK-RDAPLPSWSSSDVEEFIASDPVHGPTLKTAREAVTFGVTG 74

Query: 233 XXXXXXXXXXXXXRYSRAPHGLLLSLVAGAIVGWSVAQEGARLAYGLHKIDCMDTNLRFL 412
                        +YSR+PHG  LS + G + GW+  QE A     L+K+D M   ++F+
Sbjct: 75  AALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYKLDTMAAQVKFM 134

Query: 413 DWWKHKTE 436
           +WW+ K++
Sbjct: 135 EWWERKSQ 142