DK946521
Clone id YMU02A01NGRL0012_O08
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_O08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAGGGATGAGGCTCCAAGTTTTGTAATCTCTACCGCTATGGCGAGCTCACTTCTGTCGGC
GAGGCCACACCTCTCGTCGTCTTTCTGTTGCCCCACCTCGCAGCTTTGTATTTCCAGCAG
CGGAAGCACTTTCGTCTCCATCGCGCATTTCAAGCAAGAGTCGCCCCTTTCTTCCCTACA
GAGCAAGGCTGAGAGTGCTGGATTCCTTCCTGTAGAGTGCTCATCGCGGCCTCAGAAGAA
ATGCACGGCTCACCATAATAAGACTCGTCCCAAGAAGCACAACCCTTCCGACAAGAACCG
CAAGCCGGCAGTGTATCCCCCGTTCCCTGATCCCCCCCCTGCTGTTGTCCTCGGCTGGGG
TGACGAAGATGATGATGATGATGATGCTTCTCCTGCCTCCGCTCCTGCTCCCTCTGCAGC
TGAGCCTGCGGTAGTGGGTGCTTAGTGGGTGATCAAAGAAACATGATCAATCATACTGGT
GGCAGACATTCACATAGGGAGGAGACATGCCTGCTCATGGTCTGATGCTGAGGGTGCGTT
CAAATCATTACTTTTCCTGGGTAACTTTAGCTGCTACAGATTACTTGTAACTGTTGACTT
GTCTG
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 54
Score (bit) 59.7
E-value 1.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946521|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O08, 5'
(605 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi... 60 1e-08
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=... 52 2e-06
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=... 47 8e-05
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=... 34 0.66
sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 5... 33 1.1
sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella multo... 32 2.5
sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis P... 32 2.5
sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis P... 32 2.5
sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 pr... 32 3.3
sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana G... 32 3.3
sp|P11370|ENV2_MOUSE Retrovirus-related Env polyprotein from Fv-... 31 4.3
sp|Q8HXL3|WDR62_PIG WD repeat-containing protein 62 OS=Sus scrof... 31 5.6
sp|P32768|FLO1_YEAST Flocculation protein FLO1 OS=Saccharomyces ... 31 5.6
sp|P39712|FLO9_YEAST Flocculation protein FLO9 OS=Saccharomyces ... 30 7.3
sp|P87179|WSC1_SCHPO Cell wall integrity and stress response com... 30 9.5
sp|Q9BZZ2|SN_HUMAN Sialoadhesin OS=Homo sapiens GN=SIGLEC1 PE=1 ... 30 9.5
sp|P38894|FLO5_YEAST Flocculation protein FLO5 OS=Saccharomyces ... 30 9.5

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
sativum GN=PSRP6 PE=3 SV=1
Length = 104

Score = 59.7 bits (143), Expect = 1e-08
Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
Frame = +2

Query: 161 SPLSSLQSKA------ESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
+P SSL++KA + G L +ECSSRPQKK TAHH KTRP+K SD+NRK
Sbjct: 15 APNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRK 68


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
Length = 106

Score = 52.0 bits (123), Expect = 2e-06
Identities = 23/31 (74%), Positives = 24/31 (77%)
Frame = +2

Query: 212 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
+ECSSRPQKK TAHH KTRPKK P D RK
Sbjct: 38 IECSSRPQKKSTAHHRKTRPKKTQPWDIKRK 68


>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic
OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1
Length = 116

Score = 47.0 bits (110), Expect = 8e-05
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +2

Query: 200 GFLPVECSSRPQKKCTAHHNKTRPKK 277
G + +ECSSRPQKK TAHH KTRPKK
Sbjct: 41 GVITIECSSRPQKKGTAHHMKTRPKK 66


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
GN=TPRXL PE=2 SV=1
Length = 257

Score = 33.9 bits (76), Expect = 0.66
Identities = 26/90 (28%), Positives = 41/90 (45%)
Frame = +2

Query: 29 STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 208
S++ +SS S+ P SSS P+S SSS S+ S ++ S SS S + S+
Sbjct: 71 SSSPSSSHSSSSPSSSSSTSSPSSS---SSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSS 127

Query: 209 PVECSSRPQKKCTAHHNKTRPKKHNPSDKN 298
P SS P ++ + +PS +
Sbjct: 128 PSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 157


>sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 56
OS=Xenopus laevis GN=ankrd56 PE=2 SV=1
Length = 813

Score = 33.1 bits (74), Expect = 1.1
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Frame = +2

Query: 29 STAMASSLLSARPH--------LSSSFCCPTSQLCIS----SSGSTFVSIAHFKQESPLS 172
+T +S ++RPH LSSSF P S ++ +S S S + ++++P S
Sbjct: 193 NTRQSSFTSTSRPHNHSLSSNNLSSSFSSPESPGLVAKPYNASPSPAGSSPNIREQTPKS 252

Query: 173 SLQSKAESAGFLPVECSSRPQKK--CT 247
SKA +A F+ V C+ +++ CT
Sbjct: 253 QSLSKAANAAFVSVTCTDIKEQREGCT 279


>sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella
multocida GN=PM0659 PE=3 SV=1
Length = 1905

Score = 32.0 bits (71), Expect = 2.5
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +2

Query: 131 FVSIAHFKQE-SPLSSLQSKAESAGFLPVE 217
F S+AHFKQE +P+ L S ES FLP++
Sbjct: 588 FSSLAHFKQELAPVMYLVSTQESLSFLPID 617


>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2
SV=1
Length = 610

Score = 32.0 bits (71), Expect = 2.5
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2

Query: 77 SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 256
SSF CP + I+ T + L++L KA PVE +RP +KC+ H
Sbjct: 178 SSFACPECKESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 229

Query: 257 NKTR 268
+ +
Sbjct: 230 ERLK 233


>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1
SV=1
Length = 609

Score = 32.0 bits (71), Expect = 2.5
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2

Query: 77 SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 256
SSF CP + I+ T + L++L KA PVE +RP +KC+ H
Sbjct: 177 SSFACPECRESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 228

Query: 257 NKTR 268
+ +
Sbjct: 229 ERLK 232


>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein
OS=Homo sapiens GN=TNRC18 PE=1 SV=3
Length = 2968

Score = 31.6 bits (70), Expect = 3.3
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = +2

Query: 29 STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 208
S++ +SS S+ SSS +S SSS S+ S + ++S SS A +
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692

Query: 209 PVECSSRPQKKCTAHHNKTRPKKHNPSDK 295
P ++ P K T K RP H+P K
Sbjct: 2693 PSAQAALPTK-ATKQAGKARPSAHSPGKK 2720


>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana
GN=At3g54130 PE=2 SV=1
Length = 280

Score = 31.6 bits (70), Expect = 3.3
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2

Query: 47 SLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAG-FLPVECS 223
SLL+A HLS + + S F+ +F QE P+SS + S G +L E +
Sbjct: 142 SLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQECPMSSSSEASNSFGQWLSPEDA 201

Query: 224 SRPQKKCTAHHNKTRPKKHN 283
R +K T+ + R K+ N
Sbjct: 202 ERIRKN-TSSGSSARNKRSN 220


tr_hit_id A9SG03
Definition tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 60.8
E-value 6.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946521|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O08, 5'
(605 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten... 61 6e-08
tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea... 60 1e-07
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic... 56 2e-06
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul... 53 1e-05
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 52 2e-05
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza... 52 2e-05
tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Z... 49 2e-04
tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Z... 49 2e-04
tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome... 47 7e-04
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar... 40 0.081
tr|B6KT57|B6KT57_TOXGO Putative uncharacterized protein OS=Toxop... 38 0.40
tr|B6KG68|B6KG68_TOXGO Putative uncharacterized protein OS=Toxop... 35 3.4
tr|Q6VBJ4|Q6VBJ4_CANGA Epa5p OS=Candida glabrata GN=EPA5 PE=4 SV=1 35 3.4
tr|B4JDI7|B4JDI7_DROGR GH11196 OS=Drosophila grimshawi GN=GH1119... 34 5.8
tr|Q012C3|Q012C3_OSTTA Chromosome 09 contig 1, DNA sequence OS=O... 33 9.9

>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
Length = 315

Score = 60.8 bits (146), Expect = 6e-08
Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Frame = +2

Query: 161 SPLSSLQSKAES-----AGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
+PLSS S S A L +ECSS PQKK TA HNKTRPKK NP DKNR+
Sbjct: 14 TPLSSAVSSRSSVSNNGASLLRIECSSHPQKKSTAGHNKTRPKKSNPYDKNRQ 66


>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 137

Score = 59.7 bits (143), Expect = 1e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
L +ECSSRP+KK TAHH KTRPKKH P DKNRK
Sbjct: 50 LIIECSSRPRKKATAHHVKTRPKKHQPYDKNRK 82


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=4 SV=1
Length = 104

Score = 55.8 bits (133), Expect = 2e-06
Identities = 31/65 (47%), Positives = 39/65 (60%)
Frame = +2

Query: 110 ISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPS 289
+SS VSIA ++ + G L +ECSSRPQKK TAHH KTRP+K + S
Sbjct: 4 VSSIFGCGVSIAPNSLRKKAIGIERRNVCGGLL-IECSSRPQKKSTAHHMKTRPRKSSLS 62

Query: 290 DKNRK 304
D+NRK
Sbjct: 63 DRNRK 67


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 123

Score = 53.1 bits (126), Expect = 1e-05
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = +2

Query: 200 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
G + +ECSSRPQKK TAHH KTRP+K P D RK
Sbjct: 42 GGMSIECSSRPQKKATAHHRKTRPRKSQPWDIKRK 76


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
japonica GN=Os11g0550800 PE=2 SV=2
Length = 127

Score = 52.4 bits (124), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
L VECSSRPQKK T HH KTRPKK P D+ R+
Sbjct: 39 LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
Length = 374

Score = 52.4 bits (124), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
L VECSSRPQKK T HH KTRPKK P D+ R+
Sbjct: 39 LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
mays PE=2 SV=1
Length = 123

Score = 48.9 bits (115), Expect = 2e-04
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
L VECSSRPQKK T HH KTRPKK P D R+
Sbjct: 45 LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 77


>tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
mays PE=2 SV=1
Length = 121

Score = 48.9 bits (115), Expect = 2e-04
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
L VECSSRPQKK T HH KTRPKK P D R+
Sbjct: 43 LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75


>tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028574001
PE=4 SV=1
Length = 108

Score = 47.4 bits (111), Expect = 7e-04
Identities = 21/35 (60%), Positives = 25/35 (71%)
Frame = +2

Query: 200 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
G +ECSSRPQKK T+HH KTRP+K P D R+
Sbjct: 33 GAAVIECSSRPQKKGTSHHMKTRPRKTQPWDIKRR 67


>tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_33388 PE=4 SV=1
Length = 56

Score = 40.4 bits (93), Expect = 0.081
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = +2

Query: 212 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
V+ + +KK T H TRPKKH PSD+NRK
Sbjct: 5 VKAARHVRKKATKGHTDTRPKKHRPSDRNRK 35