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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946521
Clone id YMU02A01NGRL0012_O08
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_O08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGGGATGAGGCTCCAAGTTTTGTAATCTCTACCGCTATGGCGAGCTCACTTCTGTCGGC
GAGGCCACACCTCTCGTCGTCTTTCTGTTGCCCCACCTCGCAGCTTTGTATTTCCAGCAG
CGGAAGCACTTTCGTCTCCATCGCGCATTTCAAGCAAGAGTCGCCCCTTTCTTCCCTACA
GAGCAAGGCTGAGAGTGCTGGATTCCTTCCTGTAGAGTGCTCATCGCGGCCTCAGAAGAA
ATGCACGGCTCACCATAATAAGACTCGTCCCAAGAAGCACAACCCTTCCGACAAGAACCG
CAAGCCGGCAGTGTATCCCCCGTTCCCTGATCCCCCCCCTGCTGTTGTCCTCGGCTGGGG
TGACGAAGATGATGATGATGATGATGCTTCTCCTGCCTCCGCTCCTGCTCCCTCTGCAGC
TGAGCCTGCGGTAGTGGGTGCTTAGTGGGTGATCAAAGAAACATGATCAATCATACTGGT
GGCAGACATTCACATAGGGAGGAGACATGCCTGCTCATGGTCTGATGCTGAGGGTGCGTT
CAAATCATTACTTTTCCTGGGTAACTTTAGCTGCTACAGATTACTTGTAACTGTTGACTT
GTCTG
■■Homology search results ■■ -
sp_hit_id P11892
Definition sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum
Align length 54
Score (bit) 59.7
E-value 1.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946521|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O08, 5'
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi...    60   1e-08
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=...    52   2e-06
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=...    47   8e-05
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=...    34   0.66 
sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 5...    33   1.1  
sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella multo...    32   2.5  
sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis P...    32   2.5  
sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis P...    32   2.5  
sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 pr...    32   3.3  
sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana G...    32   3.3  
sp|P11370|ENV2_MOUSE Retrovirus-related Env polyprotein from Fv-...    31   4.3  
sp|Q8HXL3|WDR62_PIG WD repeat-containing protein 62 OS=Sus scrof...    31   5.6  
sp|P32768|FLO1_YEAST Flocculation protein FLO1 OS=Saccharomyces ...    31   5.6  
sp|P39712|FLO9_YEAST Flocculation protein FLO9 OS=Saccharomyces ...    30   7.3  
sp|P87179|WSC1_SCHPO Cell wall integrity and stress response com...    30   9.5  
sp|Q9BZZ2|SN_HUMAN Sialoadhesin OS=Homo sapiens GN=SIGLEC1 PE=1 ...    30   9.5  
sp|P38894|FLO5_YEAST Flocculation protein FLO5 OS=Saccharomyces ...    30   9.5  

>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum
           sativum GN=PSRP6 PE=3 SV=1
          Length = 104

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
 Frame = +2

Query: 161 SPLSSLQSKA------ESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           +P SSL++KA       + G L +ECSSRPQKK TAHH KTRP+K   SD+NRK
Sbjct: 15  APNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRK 68


>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic
           OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
          Length = 106

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 23/31 (74%), Positives = 24/31 (77%)
 Frame = +2

Query: 212 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           +ECSSRPQKK TAHH KTRPKK  P D  RK
Sbjct: 38  IECSSRPQKKSTAHHRKTRPKKTQPWDIKRK 68


>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic
           OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1
          Length = 116

 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = +2

Query: 200 GFLPVECSSRPQKKCTAHHNKTRPKK 277
           G + +ECSSRPQKK TAHH KTRPKK
Sbjct: 41  GVITIECSSRPQKKGTAHHMKTRPKK 66


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
           GN=TPRXL PE=2 SV=1
          Length = 257

 Score = 33.9 bits (76), Expect = 0.66
 Identities = 26/90 (28%), Positives = 41/90 (45%)
 Frame = +2

Query: 29  STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 208
           S++ +SS  S+ P  SSS   P+S    SSS S+  S ++    S  SS  S + S+   
Sbjct: 71  SSSPSSSHSSSSPSSSSSTSSPSSS---SSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSS 127

Query: 209 PVECSSRPQKKCTAHHNKTRPKKHNPSDKN 298
           P   SS P    ++  +       +PS  +
Sbjct: 128 PSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 157


>sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 56
           OS=Xenopus laevis GN=ankrd56 PE=2 SV=1
          Length = 813

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
 Frame = +2

Query: 29  STAMASSLLSARPH--------LSSSFCCPTSQLCIS----SSGSTFVSIAHFKQESPLS 172
           +T  +S   ++RPH        LSSSF  P S   ++    +S S   S  + ++++P S
Sbjct: 193 NTRQSSFTSTSRPHNHSLSSNNLSSSFSSPESPGLVAKPYNASPSPAGSSPNIREQTPKS 252

Query: 173 SLQSKAESAGFLPVECSSRPQKK--CT 247
              SKA +A F+ V C+   +++  CT
Sbjct: 253 QSLSKAANAAFVSVTCTDIKEQREGCT 279


>sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella
           multocida GN=PM0659 PE=3 SV=1
          Length = 1905

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 131 FVSIAHFKQE-SPLSSLQSKAESAGFLPVE 217
           F S+AHFKQE +P+  L S  ES  FLP++
Sbjct: 588 FSSLAHFKQELAPVMYLVSTQESLSFLPID 617


>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2
           SV=1
          Length = 610

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 77  SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 256
           SSF CP  +  I+    T   +        L++L  KA      PVE  +RP +KC+ H 
Sbjct: 178 SSFACPECKESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 229

Query: 257 NKTR 268
            + +
Sbjct: 230 ERLK 233


>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1
           SV=1
          Length = 609

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +2

Query: 77  SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 256
           SSF CP  +  I+    T   +        L++L  KA      PVE  +RP +KC+ H 
Sbjct: 177 SSFACPECRESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 228

Query: 257 NKTR 268
            + +
Sbjct: 229 ERLK 232


>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein
            OS=Homo sapiens GN=TNRC18 PE=1 SV=3
          Length = 2968

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 27/89 (30%), Positives = 40/89 (44%)
 Frame = +2

Query: 29   STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 208
            S++ +SS  S+    SSS    +S    SSS S+  S +   ++S  SS    A +    
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692

Query: 209  PVECSSRPQKKCTAHHNKTRPKKHNPSDK 295
            P   ++ P K  T    K RP  H+P  K
Sbjct: 2693 PSAQAALPTK-ATKQAGKARPSAHSPGKK 2720


>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana
           GN=At3g54130 PE=2 SV=1
          Length = 280

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 47  SLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAG-FLPVECS 223
           SLL+A  HLS  +          +  S F+   +F QE P+SS    + S G +L  E +
Sbjct: 142 SLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQECPMSSSSEASNSFGQWLSPEDA 201

Query: 224 SRPQKKCTAHHNKTRPKKHN 283
            R +K  T+  +  R K+ N
Sbjct: 202 ERIRKN-TSSGSSARNKRSN 220
tr_hit_id A9SG03
Definition tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 60.8
E-value 6.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946521|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O08, 5'
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella paten...    61   6e-08
tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea...    60   1e-07
tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medic...    56   2e-06
tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Popul...    53   1e-05
tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    52   2e-05
tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    49   2e-04
tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Z...    49   2e-04
tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome...    47   7e-04
tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus lucimar...    40   0.081
tr|B6KT57|B6KT57_TOXGO Putative uncharacterized protein OS=Toxop...    38   0.40 
tr|B6KG68|B6KG68_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.4  
tr|Q6VBJ4|Q6VBJ4_CANGA Epa5p OS=Candida glabrata GN=EPA5 PE=4 SV=1     35   3.4  
tr|B4JDI7|B4JDI7_DROGR GH11196 OS=Drosophila grimshawi GN=GH1119...    34   5.8  
tr|Q012C3|Q012C3_OSTTA Chromosome 09 contig 1, DNA sequence OS=O...    33   9.9  

>tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164709 PE=4 SV=1
          Length = 315

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
 Frame = +2

Query: 161 SPLSSLQSKAES-----AGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           +PLSS  S   S     A  L +ECSS PQKK TA HNKTRPKK NP DKNR+
Sbjct: 14  TPLSSAVSSRSSVSNNGASLLRIECSSHPQKKSTAGHNKTRPKKSNPYDKNRQ 66


>tr|B8LPD4|B8LPD4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 137

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           L +ECSSRP+KK TAHH KTRPKKH P DKNRK
Sbjct: 50  LIIECSSRPRKKATAHHVKTRPKKHQPYDKNRK 82


>tr|B7FHD4|B7FHD4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=4 SV=1
          Length = 104

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 31/65 (47%), Positives = 39/65 (60%)
 Frame = +2

Query: 110 ISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPS 289
           +SS     VSIA          ++ +    G L +ECSSRPQKK TAHH KTRP+K + S
Sbjct: 4   VSSIFGCGVSIAPNSLRKKAIGIERRNVCGGLL-IECSSRPQKKSTAHHMKTRPRKSSLS 62

Query: 290 DKNRK 304
           D+NRK
Sbjct: 63  DRNRK 67


>tr|A9PFZ3|A9PFZ3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 123

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 23/35 (65%), Positives = 26/35 (74%)
 Frame = +2

Query: 200 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           G + +ECSSRPQKK TAHH KTRP+K  P D  RK
Sbjct: 42  GGMSIECSSRPQKKATAHHRKTRPRKSQPWDIKRK 76


>tr|Q2R2R2|Q2R2R2_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0550800 PE=2 SV=2
          Length = 127

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           L VECSSRPQKK T HH KTRPKK  P D+ R+
Sbjct: 39  LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|A3CC95|A3CC95_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032917 PE=4 SV=1
          Length = 374

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           L VECSSRPQKK T HH KTRPKK  P D+ R+
Sbjct: 39  LAVECSSRPQKKATKHHMKTRPKKSQPWDRKRR 71


>tr|B6TUI7|B6TUI7_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 123

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           L VECSSRPQKK T HH KTRPKK  P D  R+
Sbjct: 45  LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 77


>tr|B6SX84|B6SX84_MAIZE Plastid-specific ribosomal protein 6 OS=Zea
           mays PE=2 SV=1
          Length = 121

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 23/33 (69%), Positives = 24/33 (72%)
 Frame = +2

Query: 206 LPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           L VECSSRPQKK T HH KTRPKK  P D  R+
Sbjct: 43  LAVECSSRPQKKGTKHHMKTRPKKTQPWDIKRR 75


>tr|A7Q1S1|A7Q1S1_VITVI Chromosome chr7 scaffold_44, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028574001
           PE=4 SV=1
          Length = 108

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +2

Query: 200 GFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           G   +ECSSRPQKK T+HH KTRP+K  P D  R+
Sbjct: 33  GAAVIECSSRPQKKGTSHHMKTRPRKTQPWDIKRR 67


>tr|A4S2B2|A4S2B2_OSTLU Predicted protein OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_33388 PE=4 SV=1
          Length = 56

 Score = 40.4 bits (93), Expect = 0.081
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 212 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 304
           V+ +   +KK T  H  TRPKKH PSD+NRK
Sbjct: 5   VKAARHVRKKATKGHTDTRPKKHRPSDRNRK 35