DK946530 |
Clone id |
YMU02A01NGRL0012_O18 |
Library |
YMU02 |
Length |
626 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_O18. 5' end sequence. |
Accession |
DK946530 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL462Contig1 |
Sequence |
ACATACTCTGAATGGAAACGGGCAAAATATCCAAAAACGACGTCGCAGGAACAATCTCTA CTCGACCAGTCGGGAGGGAGGGAGAGCGCGCGCAGAGGCGATGGGATTTATCAAGGAGTT CTTTGGGTATCTCATTCAGCGGAGCATGGAGGATCCAGAAGAACGCGATCGCAAGATCCG CGAGCACATCATTACCACCAAGGCCAACGCCGAGAAGGTGAAGCAAAGATGGGCGCACCC TGTCAAGCCATACGGCTACTGGACCACCGATAAGGATAACTACAAGTACCAACTGGAACG TAAGATAAGCAATGCCCGAGGCCGCCACGATCCTTGGGACATTTTTTCCTAATCCCAGGT AAAGTTATCTGCAGTGGTTTCCATCAGCATAAGTCACCAGATCTAATCGACAGTCTTGAG TATTCATAGAACTCTCCCGGTTGTGTTGTTGTTTCTAGCAATGGATAATGTTTCAGGTTT TTTTGCTCTTGAAGTGCCGTCCTACATTTGAGTATCTTCAACATGCTGGAAGTCTGTACA AAAGCTTTCTTTTGGATTTTAGCTCTTAAGAATCAGTATTGGAGGTTTTCTGAAAAAAAA AGAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q13671 |
Definition |
sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens |
Align length |
79 |
Score (bit) |
34.7 |
E-value |
0.37 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946530|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_O18, 5' (592 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens GN... 35 0.37 sp|P77624|ARCM_ECOLI Carbamate kinase-like protein yahI OS=Esche... 35 0.37 sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 ... 33 0.82 sp|P20930|FILA_HUMAN Filaggrin OS=Homo sapiens GN=FLG PE=1 SV=3 33 1.4 sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel sub... 32 2.4 sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1 ... 32 3.1 sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurosp... 32 3.1 sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel... 31 4.1 sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 ... 31 5.3 sp|Q9P0U4|CXXC1_HUMAN CpG-binding protein OS=Homo sapiens GN=CXX... 31 5.3 sp|Q58310|Y900_METJA Uncharacterized protein MJ0900 OS=Methanoca... 30 7.0 sp|Q8VC98|PKHA4_MOUSE Pleckstrin homology domain-containing fami... 30 7.0 sp|B4P238|KTU_DROYA Protein kintoun OS=Drosophila yakuba GN=Ppi2... 30 7.0 sp|B3N9E4|KTU_DROER Protein kintoun OS=Drosophila erecta GN=Ppi2... 30 7.0 sp|Q30TW1|RL2_SULDN 50S ribosomal protein L2 OS=Sulfurimonas den... 30 9.1 sp|Q9P0X4|CAC1I_HUMAN Voltage-dependent T-type calcium channel s... 30 9.1
>sp|Q13671|RIN1_HUMAN Ras and Rab interactor 1 OS=Homo sapiens GN=RIN1 PE=1 SV=4 Length = 783
Score = 34.7 bits (78), Expect = 0.37 Identities = 22/79 (27%), Positives = 36/79 (45%) Frame = +1
Query: 4 YSEWKRAKYPKTTSQEQSLLDQSGGRESARRGDGIYQGVLWVSHSAEHGGSRRTRSQDPR 183 Y ++RA++P+T + ++ ++ G +S R G QG + R R Q Sbjct: 698 YLVYRRAEWPET---QGAVTEEEGSGQSEARSRGEEQGCQGDGDAGVKASPRDIREQSET 754
Query: 184 AHHYHQGQRREGEAKMGAP 240 QGQ +EG A+ G P Sbjct: 755 TAEGGQGQAQEGPAQPGEP 773
>sp|P77624|ARCM_ECOLI Carbamate kinase-like protein yahI OS=Escherichia coli (strain K12) GN=yahI PE=3 SV=1 Length = 316
Score = 34.7 bits (78), Expect = 0.37 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = +2
Query: 11 NGNGQNIQKRRRRNNLYSTSREG------GRARAEAMGFIKEFFGYLIQRSMEDPEERDR 172 +GNG + RR + + REG A+ G I GYLIQ+++ + R Sbjct: 51 HGNGPQVGLDLRRAEI-AHKREGLPLTPLANCVADTQGGI----GYLIQQALNNRLARHG 105
Query: 173 KIREHIITTKANAEKVKQRWAHPVKPYGYWTTDKDNYKYQ 292 + + + T+ +K +AHP KP G + +D + Q Sbjct: 106 EKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSDSQRDELQ 145
>sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 OS=Bos taurus GN=RMI1 PE=2 SV=1 Length = 624
Score = 33.5 bits (75), Expect = 0.82 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +2
Query: 425 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 547 HR LP +L ++GFFAL++ S + VS + +QKL Sbjct: 66 HRLLPSGILETPKGELNGFFALQINSLVDVSQPAYAQIQKL 106
>sp|P20930|FILA_HUMAN Filaggrin OS=Homo sapiens GN=FLG PE=1 SV=3 Length = 4061
Score = 32.7 bits (73), Expect = 1.4 Identities = 18/54 (33%), Positives = 27/54 (50%) Frame = +1
Query: 31 PKTTSQEQSLLDQSGGRESARRGDGIYQGVLWVSHSAEHGGSRRTRSQDPRAHH 192 P S ++S D+SGGR S R G +YQ + HG +R + + +HH Sbjct: 3363 PHQQSHQESARDRSGGR-SGRSGSFLYQVSTHEQSESAHGRTRTSTGRRQGSHH 3415
Score = 32.3 bits (72), Expect = 1.8 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +1
Query: 31 PKTTSQEQSLLDQSGGRESARRGDGIYQGVLWVSHSAEHGGSRRTRSQDPRAHH 192 P S ++S D SGGR S R G IYQ + HG +R + + +HH Sbjct: 1094 PHQQSHQESARDWSGGR-SGRSGSFIYQVSTHEQSESAHGRTRTSTGRRQGSHH 1146
>sp|Q9Z0Y8|CAC1I_RAT Voltage-dependent T-type calcium channel subunit alpha-1I OS=Rattus norvegicus GN=Cacna1i PE=2 SV=3 Length = 2201
Score = 32.0 bits (71), Expect = 2.4 Identities = 18/66 (27%), Positives = 26/66 (39%) Frame = +1
Query: 7 SEWKRAKYPKTTSQEQSLLDQSGGRESARRGDGIYQGVLWVSHSAEHGGSRRTRSQDPRA 186 S W K+ +++ +SLL GG R +G + E +R P A Sbjct: 947 SSWNSLKHKPPSAEHESLLSGEGGGSCVRACEG----------AREEAPTRTAPLHAPHA 996
Query: 187 HHYHQG 204 HH H G Sbjct: 997 HHAHHG 1002
>sp|Q9D4G9|RMI1_MOUSE RecQ-mediated genome instability protein 1 OS=Mus musculus GN=Rmi1 PE=2 SV=1 Length = 616
Score = 31.6 bits (70), Expect = 3.1 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +2
Query: 425 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 547 H LP +L L ++GF+AL++ S + VS + +QKL Sbjct: 66 HPLLPDDILELPKGELNGFYALQINSLVDVSQPAYSQIQKL 106
>sp|Q8X0X2|DBP5_NEUCR ATP-dependent RNA helicase dbp-5 OS=Neurospora crassa GN=dbp-5 PE=3 SV=1 Length = 483
Score = 31.6 bits (70), Expect = 3.1 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Frame = +2
Query: 83 RARAEAMGFIKEFFGY-LIQRSMEDPEERDRKIREHIITTKANAEKV 220 R EA+ I +F+G LIQ + D ++ +RK++E I +++A AE V Sbjct: 429 RRSFEALSQIAQFYGIDLIQLNPNDLDDTERKVQEVIKSSRAQAEYV 475
>sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2 Length = 2505
Score = 31.2 bits (69), Expect = 4.1 Identities = 36/107 (33%), Positives = 42/107 (39%), Gaps = 22/107 (20%) Frame = +1
Query: 22 AKYPKTTSQEQSLLDQSG-GRES---ARRGDGIYQGVLWVS-------------HSAEHG 150 A+ P SQE L + GRES AR G + Q W H G Sbjct: 880 ARRPWAGSQEAELSREGPYGRESDHHAREGS-LEQPGFWEGEAERGKAGDPHRRHVHRQG 938
Query: 151 GSRRTRSQDPRA-----HHYHQGQRREGEAKMGAPCQAIRLLDHR*G 276 GSR +RS PR H H+ RR GE G +A R HR G Sbjct: 939 GSRESRSGSPRTGADGEHRRHRAHRRPGEE--GPEDKAERRARHREG 983
>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 OS=Homo sapiens GN=RMI1 PE=1 SV=2 Length = 625
Score = 30.8 bits (68), Expect = 5.3 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2
Query: 425 HRTLPVVLLFLAMDNVSGFFALEVPSYI*VSSTCWKSVQKL 547 H LP +L + ++GF+AL++ S + VS + +QKL Sbjct: 66 HPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKL 106
>sp|Q9P0U4|CXXC1_HUMAN CpG-binding protein OS=Homo sapiens GN=CXXC1 PE=1 SV=2 Length = 656
Score = 30.8 bits (68), Expect = 5.3 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 9/73 (12%) Frame = +1
Query: 64 DQSGGRE--------SARRGDGIYQGVLWVSHSAE-HGGSRRTRSQDPRAHHYHQGQRRE 216 D+ GGR+ R G G G + SA H S + P HH Q Q+ + Sbjct: 104 DEGGGRKRPVPDPDLQRRAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQQIK 163
Query: 217 GEAKMGAPCQAIR 255 A+M C+A R Sbjct: 164 RSARMCGECEACR 176
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RBY6 |
Definition |
tr|A9RBY6|A9RBY6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
80 |
Score (bit) |
94.7 |
E-value |
3.0e-18 |
Report |
|