BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946531|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O19, 5'
         (358 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17470|DNBI_HHV1K Major DNA-binding protein OS=Human herpesvi...    30   3.8  
sp|P17469|DNBI_HHV1F Major DNA-binding protein OS=Human herpesvi...    30   3.8  
sp|P04296|DNBI_HHV11 Major DNA-binding protein OS=Human herpesvi...    30   3.8  
sp|P74849|SIPA_SALTI Cell invasion protein sipA OS=Salmonella ty...    30   5.0  
sp|Q9W0Y8|SCN60_DROME Sodium channel protein 60E OS=Drosophila m...    29   8.4  

>sp|P17470|DNBI_HHV1K Major DNA-binding protein OS=Human herpesvirus
           1 (strain KOS) GN=DBP PE=3 SV=1
          Length = 1196

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 348 SLSLKLTTRCRKSS-YVYIGQRHEGSSSDEPNITRV 244
           ++SLKLT     SS YV+ G RH   S+  PN+TR+
Sbjct: 80  AVSLKLTPSHYSSSVYVFHGGRHLDPSTQAPNLTRL 115


>sp|P17469|DNBI_HHV1F Major DNA-binding protein OS=Human herpesvirus
           1 (strain F) GN=DBP PE=3 SV=1
          Length = 1196

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 348 SLSLKLTTRCRKSS-YVYIGQRHEGSSSDEPNITRV 244
           ++SLKLT     SS YV+ G RH   S+  PN+TR+
Sbjct: 80  AVSLKLTPSHYSSSVYVFHGGRHLDPSTQAPNLTRL 115


>sp|P04296|DNBI_HHV11 Major DNA-binding protein OS=Human herpesvirus
           1 (strain 17) GN=DBP PE=1 SV=1
          Length = 1196

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 348 SLSLKLTTRCRKSS-YVYIGQRHEGSSSDEPNITRV 244
           ++SLKLT     SS YV+ G RH   S+  PN+TR+
Sbjct: 80  AVSLKLTPSHYSSSVYVFHGGRHLDPSTQAPNLTRL 115


>sp|P74849|SIPA_SALTI Cell invasion protein sipA OS=Salmonella typhi
           GN=sipA PE=3 SV=2
          Length = 685

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = -3

Query: 353 SKAFL*NSQHDAESHHMYI*DNVMRVHPQMNRT*LGYRLIYRSSSNHT*DNNLSISELTF 174
           S+ F+ NSQ   ESHH     NV   H +++ T         S+S  T D+ ++      
Sbjct: 339 SRTFIDNSQRHGESHHSTNSSNVSHSHSRVDST-THQTETAHSASTGTIDHGIAGKIDVT 397

Query: 173 AYSGLQLLPTSSSSQKLMLILKNKK 99
           A++  + +  SSS  K   ++ ++K
Sbjct: 398 AHATAEAVTNSSSESKDGKVVTSEK 422


>sp|Q9W0Y8|SCN60_DROME Sodium channel protein 60E OS=Drosophila
           melanogaster GN=NaCP60E PE=2 SV=5
          Length = 2821

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 95  GFSCSSRXXXXXXNLMMWGVVVIQSKQRLIHLWRDYYLKCGWNLTCILICT 247
           G S S R      N +   +   +   +L+ L +D++L CGWN+  +LI T
Sbjct: 711 GMSESFRNALDVGNKVFTSIFTFECIVKLMALSKDFFL-CGWNIFDLLIVT 760

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946531|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_O19, 5'
         (358 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******