DK946545 |
Clone id |
YMU02A01NGRL0012_P12 |
Library |
YMU02 |
Length |
305 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_P12. 5' end sequence. |
Accession |
DK946545 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL182Contig1 |
Sequence |
GCAGGAAGCAATCTGGCTATGGTGGCCAAACAAAGCCGGTCTTCCACAAGAAGGCTAAGA CTACAAAGAAAATTGTGTTAAGGTTGCAATGTCAGAGTTGCAAGCATGTAACTCAGCATC CAATCAAGCGATGCAAGCACTTTGAGATTGGTGGTGACAAGAAGCGCAAGGGTGCCATGT ACTAGGTCAATTTTTGCAGCATCATGATGAATCGAAGAGTTTTGCTCAGACCTTTGCACT GTTTTAAGTATTAAATTGAACTGAATTTTGTGACCAAAAAAAAAAAAAAAAAGAAAAAAA AAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q96499 |
Definition |
sp|Q96499|RL44_GOSHI 60S ribosomal protein L44 OS=Gossypium hirsutum |
Align length |
52 |
Score (bit) |
109.0 |
E-value |
4.0e-24 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9ST20 |
Definition |
tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
52 |
Score (bit) |
111.0 |
E-value |
2.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946545|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0012_P12, 5' (259 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella paten... 111 2e-23 tr|A9RQN3|A9RQN3_PHYPA Predicted protein OS=Physcomitrella paten... 111 2e-23 tr|A9RFG1|A9RFG1_PHYPA Predicted protein (Fragment) OS=Physcomit... 111 2e-23 tr|A9RD45|A9RD45_PHYPA Predicted protein OS=Physcomitrella paten... 111 2e-23 tr|A9PD13|A9PD13_POPTR Putative uncharacterized protein OS=Popul... 111 2e-23 tr|A7Q2A2|A7Q2A2_VITVI Chromosome chr13 scaffold_45, whole genom... 109 6e-23 tr|A7P2V6|A7P2V6_VITVI Chromosome chr1 scaffold_5, whole genome ... 109 6e-23 tr|A7P2V5|A7P2V5_VITVI Chromosome chr1 scaffold_5, whole genome ... 109 6e-23 tr|Q00508|Q00508_CANMA Ribosomal protein L41 OS=Candida maltosa ... 109 6e-23 tr|Q8H5N0|Q8H5N0_ORYSJ Os07g0450000 protein OS=Oryza sativa subs... 108 2e-22 tr|Q0D5Z3|Q0D5Z3_ORYSJ Os07g0523100 protein OS=Oryza sativa subs... 108 2e-22 tr|Q0D5Z2|Q0D5Z2_ORYSJ Os07g0523300 protein (Fragment) OS=Oryza ... 108 2e-22 tr|B8LKF1|B8LKF1_PICSI Putative uncharacterized protein OS=Picea... 108 2e-22 tr|B6TXV2|B6TXV2_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=... 108 2e-22 tr|B3TLV9|B3TLV9_ELAGV 60S ribosomal protein L44 OS=Elaeis guine... 108 2e-22 tr|B3TLU1|B3TLU1_ELAGV 60S ribosomal protein L44 OS=Elaeis guine... 108 2e-22 tr|B3TLU0|B3TLU0_ELAGV 60S ribosomal protein L44 OS=Elaeis guine... 108 2e-22 tr|A6N0K7|A6N0K7_ORYSI Putative uncharacterized protein OS=Oryza... 108 2e-22 tr|A9P9G6|A9P9G6_POPTR Putative uncharacterized protein OS=Popul... 107 4e-22 tr|B7FGY8|B7FGY8_MEDTR Putative uncharacterized protein OS=Medic... 106 5e-22 tr|Q94ER6|Q94ER6_BRARP 60S ribosomal protein L144 (Fragment) OS=... 105 1e-21 tr|Q6RI22|Q6RI22_9ASPA 60S ribosomal protein L44 OS=Phalaenopsis... 105 1e-21 tr|B8LRK8|B8LRK8_PICSI Putative uncharacterized protein OS=Picea... 105 1e-21 tr|B6SIY6|B6SIY6_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=... 105 1e-21 tr|B6SHJ5|B6SHJ5_MAIZE 60S ribosomal protein L44 OS=Zea mays PE=... 105 1e-21 tr|A9NQ93|A9NQ93_PICSI Putative uncharacterized protein OS=Picea... 105 1e-21 tr|Q2V9C3|Q2V9C3_SOLTU Ribosomal protein L41-like OS=Solanum tub... 100 4e-20 tr|B0Z9N5|B0Z9N5_9BILA Ribosomal protein rpl36a OS=Lineus viridi... 99 1e-19 tr|A9UPR3|A9UPR3_MONBE Predicted protein OS=Monosiga brevicollis... 97 4e-19 tr|A7SD22|A7SD22_NEMVE Predicted protein OS=Nematostella vectens... 97 4e-19
>tr|A9ST20|A9ST20_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_106959 PE=3 SV=1 Length = 105
Score = 111 bits (278), Expect = 2e-23 Identities = 50/52 (96%), Positives = 51/52 (98%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLRLQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9RQN3|A9RQN3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177351 PE=3 SV=1 Length = 105
Score = 111 bits (278), Expect = 2e-23 Identities = 50/52 (96%), Positives = 51/52 (98%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLRLQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9RFG1|A9RFG1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_129054 PE=3 SV=1 Length = 105
Score = 111 bits (278), Expect = 2e-23 Identities = 50/52 (96%), Positives = 51/52 (98%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLRLQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9RD45|A9RD45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_109414 PE=3 SV=1 Length = 105
Score = 111 bits (278), Expect = 2e-23 Identities = 50/52 (96%), Positives = 51/52 (98%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ+CKHVTQHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLRLQCQACKHVTQHPIKRCKHFEIGGDKKGKG 101
>tr|A9PD13|A9PD13_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=3 SV=1 Length = 105
Score = 111 bits (277), Expect = 2e-23 Identities = 50/52 (96%), Positives = 51/52 (98%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKG 101
>tr|A7Q2A2|A7Q2A2_VITVI Chromosome chr13 scaffold_45, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028799001 PE=3 SV=1 Length = 115
Score = 109 bits (273), Expect = 6e-23 Identities = 49/52 (94%), Positives = 50/52 (96%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 60 YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 111
>tr|A7P2V6|A7P2V6_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030200001 PE=3 SV=1 Length = 109
Score = 109 bits (273), Expect = 6e-23 Identities = 49/52 (94%), Positives = 50/52 (96%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 54 YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 105
>tr|A7P2V5|A7P2V5_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030198001 PE=3 SV=1 Length = 151
Score = 109 bits (273), Expect = 6e-23 Identities = 49/52 (94%), Positives = 50/52 (96%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 96 YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 147
>tr|Q00508|Q00508_CANMA Ribosomal protein L41 OS=Candida maltosa PE=3 SV=1 Length = 105
Score = 109 bits (273), Expect = 6e-23 Identities = 49/52 (94%), Positives = 50/52 (96%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVLRLQCQ CKHV+QHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 101
>tr|Q8H5N0|Q8H5N0_ORYSJ Os07g0450000 protein OS=Oryza sativa subsp. japonica GN=OJ1047_A06.130 PE=3 SV=1 Length = 105
Score = 108 bits (269), Expect = 2e-22 Identities = 48/52 (92%), Positives = 50/52 (96%) Frame = +2
Query: 2 YGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVTQHPIKRCKHFEIGGDKKRKG 157 YGGQTKPVFHKKAKTTKKIVL+LQCQSCKH +QHPIKRCKHFEIGGDKK KG Sbjct: 50 YGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKG 101
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