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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946551
Clone id YMU02A01NGRL0012_P21
Library
Length 491
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_P21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTCTCAAGAGTAACCTCCCTTATCACAATGGCTCTCTCTCAAATCAGTGGAAGGATTGCT
TTCTCCAATCTTGTTACCATCCTCGTGGTGATGGGTGTTTTGGCAATGGCCGGACAAAGT
GCAATGGCACAAGTTGAACCTCCTACTCCAACTCCCACAACTGGTGATGATAATGCTGCT
ACTTTAACCCCAGTTGCGTTTCTTGCCACGGCTTTTGCCTCTCTCCTTGTTGGAGTGTTT
TTGAGCTACTAATTCTTTCAATCATGTGAGCACATTGAGAGGGAGTGGCAACTTTTGTAT
TTGACCTACCCTACATATGATGAGTTACGAGACACACCGTAGGAACTCCAGCTCCCATTT
CCTACCTATACCTAGCGATTTCATTATTCATTCATTTTCTAGAGTTTGAGATGTATTCTG
GTGGTTTTTGTGAATAATAAATATTGACTAGTCTTCTTTCACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 58
Score (bit) 32.0
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946551|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_P21, 5'
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE...    32   1.3  
sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation p...    32   1.3  
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE...    30   3.8  
sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE...    30   6.5  

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
           SV=1
          Length = 798

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
 Frame = +3

Query: 63  LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 230
           + SC  P G  C G+GR KCN                C   Y+   C  C G C +PC
Sbjct: 602 MDSCISPEGGLCSGHGRCKCNRCQ-------------CLDGYYGALCDQCPG-CKTPC 645


>sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation
           protein hypB OS=Synechocystis sp. (strain PCC 6803)
           GN=hypB PE=3 SV=1
          Length = 285

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 129 CHCTLSGHCQNTHHHEDGNKIGESNPSTDLRESHCDKGGYS 7
           C C+  G   ++HHH        S+   D +E H   G YS
Sbjct: 5   CGCSAVGTVAHSHHHHGDGNFAHSHDDHDQQEHHHHHGNYS 45


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
           SV=2
          Length = 769

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +3

Query: 66  QSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSCHGFCLSPC 230
           + C +PR   C G GR +CN          H+      Y  P C  C G C SPC
Sbjct: 580 EGCLNPRRVECSGRGRCRCN------VCECHSG-----YQLPLCQECPG-CPSPC 622


>sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE=1
           SV=2
          Length = 806

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = +3

Query: 63  LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 230
           + SC  P G  C G+G  KCN                C   Y+   C  C G C SPC
Sbjct: 602 VDSCVSPEGGLCSGHGYCKCNRCQ-------------CLDGYYGALCDQCLG-CKSPC 645
tr_hit_id Q22Z13
Definition tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family protein OS=Tetrahymena thermophila SB210
Align length 70
Score (bit) 39.3
E-value 0.098
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946551|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_P21, 5'
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family ...    39   0.098
tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1    35   1.9  
tr|Q8YX86|Q8YX86_ANASP Alr1329 protein OS=Anabaena sp. (strain P...    33   9.2  
tr|Q32KI2|Q32KI2_CANFA Arylsulfatase D (Fragment) OS=Canis famil...    33   9.2  

>tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family
            protein OS=Tetrahymena thermophila SB210
            GN=TTHERM_00117540 PE=4 SV=2
          Length = 2236

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 27   NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 206
            NGS SN    C LQ  + P+   C     T CN       +++      C + +PSC++C
Sbjct: 1637 NGSTSNNCLSCELQRYFDPQSSKCL----TSCNSNQYHDVNSNK-----CIFCDPSCLTC 1687

Query: 207  HGFCLSPCWS 236
            +G  +S C S
Sbjct: 1688 NGPQISNCTS 1697



 Score = 35.4 bits (80), Expect = 1.4
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +3

Query: 27   NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 206
            NGS SN    C LQ  + P+   C  +    CN       S +      C   +PSC++C
Sbjct: 1237 NGSSSNNCLSCELQRYFDPQSSKCLSS----CNSNQYPDISTNL-----CKICDPSCLTC 1287

Query: 207  HGFCLSPCWSVFELLIL 257
            +G   S C S  + L L
Sbjct: 1288 NGSQSSNCTSCRQGLFL 1304



 Score = 34.7 bits (78), Expect = 2.4
 Identities = 24/77 (31%), Positives = 33/77 (42%)
 Frame = +3

Query: 27   NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 206
            NGS SN    C LQ  + P+   C     T CN       S++      C   + SC++C
Sbjct: 1037 NGSSSNNCLSCELQRYFDPQSSKCI----TSCNSNQYPDVSSNL-----CKVCDSSCLTC 1087

Query: 207  HGFCLSPCWSVFELLIL 257
            +G   S C S  + L L
Sbjct: 1088 NGSYSSNCTSCRQGLFL 1104



 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +3

Query: 27   NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 206
            NGS SN    C LQ  + P+ + C       CN       S++      C   + SC++C
Sbjct: 1437 NGSASNNCLSCELQRYFDPQSNKCL----ISCNSNQYPDVSSNL-----CKVCDSSCLTC 1487

Query: 207  HGFCLSPCWSVFELLIL 257
            +G   S C S  + L L
Sbjct: 1488 NGSQSSNCTSCRQGLFL 1504


>tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1
          Length = 309

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = -3

Query: 268 HMIERISSSKTLQQGERQKPWQETQLGLK*QHYHHQLWELE*EVQLVPLHFVRPLPKHPS 89
           H++E I+   T +   R+K + E    +   H+HHQL   E      P+HF  P P    
Sbjct: 68  HLLEEIARPHTWEGTHRKKNYVEPIHQISPMHFHHQLPPRE-----PPIHFYPPPPPQEP 122

Query: 88  PR 83
           PR
Sbjct: 123 PR 124


>tr|Q8YX86|Q8YX86_ANASP Alr1329 protein OS=Anabaena sp. (strain PCC
           7120) GN=alr1329 PE=4 SV=1
          Length = 470

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 30  GSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 161
           G + N W+D F +S  HPRG  CF +  T  N      ++NS N
Sbjct: 431 GLIWNPWRDIFNRSIEHPRGSICFKSYSTTLN----AKWNNSCN 470


>tr|Q32KI2|Q32KI2_CANFA Arylsulfatase D (Fragment) OS=Canis
           familiaris GN=arsd PE=2 SV=1
          Length = 579

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 21  YHNGSLSNQWKDCFLQSCYHPRGDG-CFGNGRTKCNGTS*TSYS 149
           +H       WK  ++   +HP+G G C+G G   C+G   T +S
Sbjct: 454 WHEKDSGRLWKVHYMTPRFHPKGAGACYGRGVCPCSGDGVTQHS 497