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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946552
Clone id YMU02A01NGRL0012_P22
Library
Length 208
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_P22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATCATATATCCCTATCGTTTGGTGTGGAAATTGTTTCCCATACTTGGATATACAAGGTTA
CTTTCTTCCTAAAGCTCTTGTAATGTGGGGGATGATTGATCTGCCCATAAGAAGCAACAC
AAATGTAAACCACTTTGTATATAAAGTTGTTGCAATTAATTGGAAACATAACTTTTTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A0KL53
Definition sp|A0KL53|HTPG_AERHH Chaperone protein htpG OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240)
Align length 36
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946552|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_P22, 5'
         (178 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A0KL53|HTPG_AERHH Chaperone protein htpG OS=Aeromonas hydroph...    32   1.3  
sp|Q2KYY2|HTPG_BORA1 Chaperone protein htpG OS=Bordetella avium ...    30   3.7  
sp|A4SLY0|HTPG_AERS4 Chaperone protein htpG OS=Aeromonas salmoni...    30   3.7  
sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa s...    30   4.8  
sp|A4XV81|HTPG_PSEMY Chaperone protein htpG OS=Pseudomonas mendo...    30   4.8  
sp|Q4ZUW2|HTPG_PSEU2 Chaperone protein htpG OS=Pseudomonas syrin...    29   6.3  
sp|Q883Y9|HTPG_PSESM Chaperone protein htpG OS=Pseudomonas syrin...    29   6.3  
sp|Q88FB9|HTPG_PSEPK Chaperone protein htpG OS=Pseudomonas putid...    29   6.3  
sp|Q9I3C5|HTPG_PSEAE Chaperone protein htpG OS=Pseudomonas aerug...    29   6.3  
sp|A6V7J7|HTPG_PSEA7 Chaperone protein htpG OS=Pseudomonas aerug...    29   6.3  
sp|Q48K64|HTPG_PSE14 Chaperone protein htpG OS=Pseudomonas syrin...    29   6.3  
sp|Q3U962|CO5A2_MOUSE Collagen alpha-2(V) chain OS=Mus musculus ...    29   8.3  

>sp|A0KL53|HTPG_AERHH Chaperone protein htpG OS=Aeromonas hydrophila
           subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=htpG
           PE=3 SV=1
          Length = 641

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKKVTLYIQVWETI 29
           K+ YI   SY    + PH + FRKK    + +WE +
Sbjct: 444 KIYYITADSYAAAKNSPHLEIFRKKGVEVLLMWERV 479


>sp|Q2KYY2|HTPG_BORA1 Chaperone protein htpG OS=Bordetella avium
           (strain 197N) GN=htpG PE=3 SV=1
          Length = 630

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKKVTLYIQVWETI 29
           K+ Y+   SY   ++ PH + FRKK    + +W+ +
Sbjct: 434 KIYYVTADSYSAASNSPHLEIFRKKGIEVLLLWDRV 469


>sp|A4SLY0|HTPG_AERS4 Chaperone protein htpG OS=Aeromonas
           salmonicida (strain A449) GN=htpG PE=3 SV=1
          Length = 637

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKKVTLYIQVWETI 29
           K+ YI   S+    + PH + FRKK    + +WE +
Sbjct: 440 KIYYITADSFAAAKNSPHLEIFRKKGVEVLLMWERV 475


>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa
           subsp. indica GN=Rf1 PE=2 SV=1
          Length = 791

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +2

Query: 50  IQGYFLPKALV-MWGMIDLPIRSNTNVNHFVYKVV 151
           +QGY    ALV M G++DL +R+  + +H+V+ ++
Sbjct: 343 LQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSIL 377


>sp|A4XV81|HTPG_PSEMY Chaperone protein htpG OS=Pseudomonas
           mendocina (strain ymp) GN=htpG PE=3 SV=1
          Length = 634

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKK 62
           K+ Y+   SY QI + PH + FRKK
Sbjct: 435 KIYYLTGESYAQIKNSPHLEVFRKK 459


>sp|Q4ZUW2|HTPG_PSEU2 Chaperone protein htpG OS=Pseudomonas syringae
           pv. syringae (strain B728a) GN=htpG PE=3 SV=2
          Length = 635

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKK 62
           K+ Y+   SY Q+ + PH + FRKK
Sbjct: 436 KIYYLTGESYAQVKNSPHLEVFRKK 460


>sp|Q883Y9|HTPG_PSESM Chaperone protein htpG OS=Pseudomonas syringae
           pv. tomato GN=htpG PE=3 SV=1
          Length = 635

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKK 62
           K+ Y+   SY Q+ + PH + FRKK
Sbjct: 436 KIYYLTGESYAQVRNSPHLEVFRKK 460


>sp|Q88FB9|HTPG_PSEPK Chaperone protein htpG OS=Pseudomonas putida
           (strain KT2440) GN=htpG PE=3 SV=1
          Length = 634

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKK 62
           K+ Y+   SY Q+ + PH + FRKK
Sbjct: 435 KIYYLTGESYAQVKNSPHLEVFRKK 459


>sp|Q9I3C5|HTPG_PSEAE Chaperone protein htpG OS=Pseudomonas
           aeruginosa GN=htpG PE=3 SV=1
          Length = 634

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKK 62
           K+ Y+   SY Q+ + PH + FRKK
Sbjct: 435 KIYYLTGESYSQVKNSPHLEVFRKK 459


>sp|A6V7J7|HTPG_PSEA7 Chaperone protein htpG OS=Pseudomonas
           aeruginosa (strain PA7) GN=htpG PE=3 SV=1
          Length = 634

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 136 KVVYICVASYGQINHPPHYKSFRKK 62
           K+ Y+   SY Q+ + PH + FRKK
Sbjct: 435 KIYYLTGESYSQVKNSPHLEVFRKK 459
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946552|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_P22, 5'
         (178 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******