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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946556
Clone id YMU02A01NGRL0013_A03
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_A03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACTCGTCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCGGCTAAATTAACTGAAAG
AAAAAACTTTATCTTCGCAGAAAATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGT
AGATTAATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAT
AATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAA
AGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAG
AATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTGTCAAGATTATTGAACA
TCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGG
GTTTTTTCCTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAA
■■Homology search results ■■ -
sp_hit_id O51578
Definition sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi
Align length 57
Score (bit) 32.0
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946556|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_A03, 5'
         (433 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    32   1.1  
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    31   1.9  
sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridi...    30   5.6  
sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase OS=Streptoco...    29   7.3  
sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase OS=Streptoco...    29   7.3  
sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase OS=Streptoco...    29   7.3  
sp|A3CK60|TGT_STRSV Queuine tRNA-ribosyltransferase OS=Streptoco...    29   9.6  
sp|Q8DVZ3|TGT_STRMU Queuine tRNA-ribosyltransferase OS=Streptoco...    29   9.6  
sp|A8AUL3|TGT_STRGC Queuine tRNA-ribosyltransferase OS=Streptoco...    29   9.6  

>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 176 SIIVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 346
           +IIVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  IN  G +
Sbjct: 622 NIIVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +2

Query: 212 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 358
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K GIN SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237) GN=tgt PE=3
           SV=1
          Length = 374

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S IR  LI     S   LG++ T H CF TP
Sbjct: 2   SAIRYELIKKCKQSGARLGRVYTPHGCFDTP 32


>sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase
           OS=Streptococcus pneumoniae serotype 2 (strain D39 /
           NCTC 7466) GN=tgt PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|A3CK60|TGT_STRSV Queuine tRNA-ribosyltransferase
           OS=Streptococcus sanguinis (strain SK36) GN=tgt PE=3
           SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIQYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q8DVZ3|TGT_STRMU Queuine tRNA-ribosyltransferase
           OS=Streptococcus mutans GN=tgt PE=3 SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIQYRLIKKEKHTGARLGEIITPHGVFPTP 34


>sp|A8AUL3|TGT_STRGC Queuine tRNA-ribosyltransferase
           OS=Streptococcus gordonii (strain Challis / ATCC 35105 /
           CH1 / DL1 / V288) GN=tgt PE=3 SV=1
          Length = 380

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
           S I+ RLI    H+   LG+I+T H  F TP
Sbjct: 4   SPIQYRLIKKEKHTGARLGEIITPHGTFPTP 34
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946556|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_A03, 5'
         (433 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   1.9  
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty...    33   9.3  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -2

Query: 153 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 4
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
          Length = 955

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 203 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 367
           I+G ++ SGE+N E   ++   DS   +T    IN+GK   IN S  +  I   F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796