DK946556
Clone id YMU02A01NGRL0013_A03
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_A03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
ACTCGTCTCGCAGTGATTTTGATAGTTGAGGGATCGTATCTCGGCTAAATTAACTGAAAG
AAAAAACTTTATCTTCGCAGAAAATATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGT
AGATTAATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAT
AATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAA
AGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACTAAACCTCAGAG
AATAAATCTGGGAAAGAAAGTTGGAATAAATAAATCCGGGTTTGTCAAGATTATTGAACA
TCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGATATATTTCCCTAAGG
GTTTTTTCCTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAA
■■Homology search results ■■ -
sp_hit_id O51578
Definition sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi
Align length 57
Score (bit) 32.0
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946556|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_A03, 5'
(433 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 32 1.1
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 1.9
sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridi... 30 5.6
sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase OS=Streptoco... 29 7.3
sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase OS=Streptoco... 29 7.3
sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase OS=Streptoco... 29 7.3
sp|A3CK60|TGT_STRSV Queuine tRNA-ribosyltransferase OS=Streptoco... 29 9.6
sp|Q8DVZ3|TGT_STRMU Queuine tRNA-ribosyltransferase OS=Streptoco... 29 9.6
sp|A8AUL3|TGT_STRGC Queuine tRNA-ribosyltransferase OS=Streptoco... 29 9.6

>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 32.0 bits (71), Expect = 1.1
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2

Query: 176 SIIVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 346
+IIVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 622 NIIVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 1.9
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +2

Query: 212 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 358
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|A3DE13|TGT_CLOTH Queuine tRNA-ribosyltransferase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=tgt PE=3
SV=1
Length = 374

Score = 29.6 bits (65), Expect = 5.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S IR LI S LG++ T H CF TP
Sbjct: 2 SAIRYELIKKCKQSGARLGRVYTPHGCFDTP 32


>sp|P66908|TGT_STRR6 Queuine tRNA-ribosyltransferase
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
GN=tgt PE=3 SV=1
Length = 380

Score = 29.3 bits (64), Expect = 7.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S I+ RLI H+ LG+I+T H F TP
Sbjct: 4 SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|P66907|TGT_STRPN Queuine tRNA-ribosyltransferase
OS=Streptococcus pneumoniae GN=tgt PE=3 SV=1
Length = 380

Score = 29.3 bits (64), Expect = 7.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S I+ RLI H+ LG+I+T H F TP
Sbjct: 4 SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q04IB3|TGT_STRP2 Queuine tRNA-ribosyltransferase
OS=Streptococcus pneumoniae serotype 2 (strain D39 /
NCTC 7466) GN=tgt PE=3 SV=1
Length = 380

Score = 29.3 bits (64), Expect = 7.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S I+ RLI H+ LG+I+T H F TP
Sbjct: 4 SPIKYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|A3CK60|TGT_STRSV Queuine tRNA-ribosyltransferase
OS=Streptococcus sanguinis (strain SK36) GN=tgt PE=3
SV=1
Length = 380

Score = 28.9 bits (63), Expect = 9.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S I+ RLI H+ LG+I+T H F TP
Sbjct: 4 SPIQYRLIKKEKHTGARLGEIITPHGTFPTP 34


>sp|Q8DVZ3|TGT_STRMU Queuine tRNA-ribosyltransferase
OS=Streptococcus mutans GN=tgt PE=3 SV=1
Length = 380

Score = 28.9 bits (63), Expect = 9.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S I+ RLI H+ LG+I+T H F TP
Sbjct: 4 SPIQYRLIKKEKHTGARLGEIITPHGVFPTP 34


>sp|A8AUL3|TGT_STRGC Queuine tRNA-ribosyltransferase
OS=Streptococcus gordonii (strain Challis / ATCC 35105 /
CH1 / DL1 / V288) GN=tgt PE=3 SV=1
Length = 380

Score = 28.9 bits (63), Expect = 9.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1

Query: 106 SKIRGRLINLVTHSFQELGKIVTKHNCFGTP 198
S I+ RLI H+ LG+I+T H F TP
Sbjct: 4 SPIQYRLIKKEKHTGARLGEIITPHGTFPTP 34


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946556|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_A03, 5'
(433 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 35.0 bits (79), Expect = 1.9
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -2

Query: 153 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 4
LK +++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.3
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2

Query: 203 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 367
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796