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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946571
Clone id YMU02A01NGRL0013_A21
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_A21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCTC
AAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGC
CGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCC
TACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAA
GGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCAC
GGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGC
CAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAGCC
TTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTC
CAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGGGATGAATGCCTGC
TTCCCATTTCCCCCTGGCGCCCAAAAAGCTTTGCTCTTA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 168
Score (bit) 188.0
E-value 1.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946571|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_A21, 5'
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   188   1e-47
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   186   7e-47
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   185   1e-46
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   185   2e-46
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   184   4e-46
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   182   8e-46
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   182   8e-46
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   182   1e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   181   2e-45
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   181   3e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   181   3e-45
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   180   4e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   180   4e-45
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   179   7e-45
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   179   9e-45
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   178   2e-44
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   178   2e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   178   2e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   178   2e-44
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   177   3e-44
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   177   3e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   177   3e-44
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   177   4e-44
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   176   6e-44

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  188 bits (478), Expect = 1e-47
 Identities = 91/168 (54%), Positives = 115/168 (68%), Gaps = 5/168 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAESLSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKF 168
           A V  + +   SL+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+
Sbjct: 10  ATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKY 69

Query: 169 ETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKL 345
           ETLSYLPPLS E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKL
Sbjct: 70  ETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKL 129

Query: 346 PMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 489
           PMFGC D+A V++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 130 PMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  186 bits (472), Expect = 7e-47
 Identities = 92/168 (54%), Positives = 116/168 (69%), Gaps = 5/168 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAESLSKSFSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKF 168
           A V+ +     S+   F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKF
Sbjct: 12  AAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKF 71

Query: 169 ETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKL 345
           ETLSYLPPLSSEQ+AK+VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKL
Sbjct: 72  ETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKL 131

Query: 346 PMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 489
           PMFGC D++ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 132 PMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  185 bits (470), Expect = 1e-46
 Identities = 94/172 (54%), Positives = 116/172 (67%), Gaps = 7/172 (4%)
 Frame = +1

Query: 1   AVVAPSCAPAESLSKSF------SGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNK 162
           AVV P  A A S +KS       +GLKA              +NGSRVS M VW+PY+N 
Sbjct: 9   AVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQVWEPYNNL 68

Query: 163 KFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWK 342
           KFETLSYLPPLS + +AKQ+D++++ GW PCIEFD  G+V RE     GYYDGRYW MWK
Sbjct: 69  KFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWK 128

Query: 343 LPMFGCQDAAAVLREIAECAKEY-PEAFIRVLGFDAKRQVQVSGFLVQKPSV 495
           LPMFGC D+A+VLREI EC K Y  + +IR LGFD  RQVQ + F+V +P++
Sbjct: 129 LPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPTL 180


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  185 bits (469), Expect = 2e-46
 Identities = 91/168 (54%), Positives = 113/168 (67%), Gaps = 4/168 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAESLSKSFSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKF 168
           A VA +     S+   F+GL+++  F    K+ N L+   SNG RVS M VW P   KKF
Sbjct: 10  AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKF 69

Query: 169 ETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLP 348
           ETLSYLPPLS E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLP
Sbjct: 70  ETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLP 129

Query: 349 MFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           MFGC DA+ V+ E+ E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 130 MFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  184 bits (466), Expect = 4e-46
 Identities = 89/171 (52%), Positives = 113/171 (66%), Gaps = 8/171 (4%)
 Frame = +1

Query: 1   AVVAPSCAPAESLSKSFSGLKATTLFAPKSPNPLA--------ISNGSRVSAMLVWKPYD 156
           AV APS     ++  +F+GLK+   F        A         SNGSRV  M VW PY 
Sbjct: 16  AVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYA 75

Query: 157 NKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVM 336
           NKKFETLSYLP L+ EQ+ K+V+++++  W PC+EF++ G + R + +  GYYDGRYWVM
Sbjct: 76  NKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVM 135

Query: 337 WKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 489
           WKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 136 WKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  182 bits (463), Expect = 8e-46
 Identities = 88/164 (53%), Positives = 112/164 (68%), Gaps = 8/164 (4%)
 Frame = +1

Query: 22  APAESLSKSFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETL 177
           A A ++  +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETL
Sbjct: 7   AGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETL 66

Query: 178 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFG 357
           SYLP L+ EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFG
Sbjct: 67  SYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFG 126

Query: 358 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 489
           C +A+ V+ E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 127 CTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  182 bits (463), Expect = 8e-46
 Identities = 89/169 (52%), Positives = 113/169 (66%), Gaps = 5/169 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAE-SLSKSFSGLKATTLFAPKSPNP---LAISNGSRVSAMLVWKPYDNKKF 168
           AV   S  PA+ S+   F+GLK+T  F     N       SNG RV  M VW   + K++
Sbjct: 10  AVATVSRTPAQASMVAPFTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQNMKRY 69

Query: 169 ETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKI-GSVYREHFHGSGYYDGRYWVMWKL 345
           ETLSYLPPL+++Q+A+QVD+++   W PC+EF+   G VYREH +  GYYDGRYW MWKL
Sbjct: 70  ETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKL 129

Query: 346 PMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           PMFGC D A VL E+ EC KEYP AFIR++GFD+ RQVQ   F+  KP+
Sbjct: 130 PMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  182 bits (462), Expect = 1e-45
 Identities = 89/163 (54%), Positives = 112/163 (68%), Gaps = 7/163 (4%)
 Frame = +1

Query: 22  APAES-LSKSFSGLKA------TTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLS 180
           +PA+S +   F+GL +      T  FA  S  P   SNG RV  M VW P   KKFETLS
Sbjct: 16  SPAQSNMVVPFAGLHSSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLS 72

Query: 181 YLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGC 360
           YLPPL+ EQ+ ++VD+++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC
Sbjct: 73  YLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGC 132

Query: 361 QDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 489
            D++ VL+E+ EC+K YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 133 TDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  182 bits (462), Expect = 1e-45
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 4/152 (2%)
 Frame = +1

Query: 49  FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 216
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 217 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 396
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 397 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  182 bits (461), Expect = 1e-45
 Identities = 90/170 (52%), Positives = 119/170 (70%), Gaps = 5/170 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAES-LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKF 168
           AV   + AP ++ L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKF
Sbjct: 8   AVTTINRAPVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKF 67

Query: 169 ETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKL 345
           ETLSYLPPL+ EQ+ K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+L
Sbjct: 68  ETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRL 127

Query: 346 PMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 495
           P+FG  DAA VL+E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 128 PLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 165
Score (bit) 302.0
E-value 1.0e-80
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946571|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_A21, 5'
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   302   1e-80
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   207   4e-52
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   205   1e-51
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   203   5e-51
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   200   4e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   200   4e-50
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   200   5e-50
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   195   2e-48
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   192   1e-47
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   192   1e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   189   1e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   188   2e-46
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   186   6e-46
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   186   8e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   186   8e-46
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   184   2e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   184   4e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   9e-45
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   9e-45
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   182   9e-45
tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus m...   182   1e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   181   3e-44
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...   181   3e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  302 bits (773), Expect = 1e-80
 Identities = 144/165 (87%), Positives = 155/165 (93%), Gaps = 1/165 (0%)
 Frame = +1

Query: 1   AVVAPSCAPA-ESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETL 177
           AV APSCA A ESLSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETL
Sbjct: 9   AVSAPSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETL 68

Query: 178 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFG 357
           SYLPPL+++QIAKQV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFG
Sbjct: 69  SYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFG 128

Query: 358 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           C D+ +VLREIAECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 129 CTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  207 bits (526), Expect = 4e-52
 Identities = 100/168 (59%), Positives = 123/168 (73%), Gaps = 4/168 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETL 177
           A  +P+    ES S K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET 
Sbjct: 12  AAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETF 71

Query: 178 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLP 348
           SYLPPL+ +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLP
Sbjct: 72  SYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLP 131

Query: 349 MFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           MFGC D+A VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 132 MFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  205 bits (522), Expect = 1e-51
 Identities = 99/167 (59%), Positives = 125/167 (74%), Gaps = 6/167 (3%)
 Frame = +1

Query: 10  APSC--APAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLS 180
           A SC  AP+ES S K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET S
Sbjct: 48  ASSCVGAPSESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFS 107

Query: 181 YLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPM 351
           YLPPL+ +QIAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPM
Sbjct: 108 YLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPM 167

Query: 352 FGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           FGC D++ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 168 FGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  203 bits (517), Expect = 5e-51
 Identities = 99/168 (58%), Positives = 122/168 (72%), Gaps = 4/168 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETL 177
           A  +P+    ES S K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET 
Sbjct: 12  AAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETF 71

Query: 178 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLP 348
           SYLPPL+ +QIAKQVDFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLP
Sbjct: 72  SYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLP 131

Query: 349 MFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           MFGC D+A VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 132 MFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  200 bits (509), Expect = 4e-50
 Identities = 96/161 (59%), Positives = 118/161 (73%), Gaps = 4/161 (2%)
 Frame = +1

Query: 22  APAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLS 198
           A  ES S K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS
Sbjct: 24  ASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLS 83

Query: 199 SEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDA 369
            +QIA+QVD+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D+
Sbjct: 84  DDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDS 143

Query: 370 AAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           + VLREI EC   YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 144 SQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  200 bits (509), Expect = 4e-50
 Identities = 93/168 (55%), Positives = 123/168 (73%), Gaps = 4/168 (2%)
 Frame = +1

Query: 1   AVVAPSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETL 177
           A  +P+    +S S K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET 
Sbjct: 16  AAASPAAVSRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETF 75

Query: 178 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLP 348
           SYLPPL+ ++IAKQVD+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLP
Sbjct: 76  SYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLP 135

Query: 349 MFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           MFGC D++ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 136 MFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  200 bits (508), Expect = 5e-50
 Identities = 92/153 (60%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +1

Query: 43  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 222
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 223 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 393
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 394 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  195 bits (495), Expect = 2e-48
 Identities = 96/173 (55%), Positives = 120/173 (69%), Gaps = 9/173 (5%)
 Frame = +1

Query: 1   AVVAPSC----APAESLS-----KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPY 153
           AVVAP+     +PA S S     K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P 
Sbjct: 9   AVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPI 68

Query: 154 DNKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWV 333
              KFET SYLPPLS + IAKQV++M+++   PC+EFD    V R +    GYYDGRYW 
Sbjct: 69  GMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWT 128

Query: 334 MWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           MWKLPMFGCQD+A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 129 MWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  192 bits (487), Expect = 1e-47
 Identities = 94/172 (54%), Positives = 117/172 (68%), Gaps = 9/172 (5%)
 Frame = +1

Query: 4   VVAPSCAPAESLS---------KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYD 156
           VVAP+   A S +         K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P  
Sbjct: 10  VVAPAAFAASSSAVSTSESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIG 69

Query: 157 NKKFETLSYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVM 336
             KFET SYLPPLS + IAKQVD+M+++   PC+EFD    V R +    GYYDGRYW M
Sbjct: 70  MTKFETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTM 129

Query: 337 WKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           WKLPMFGCQD A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 130 WKLPMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  192 bits (487), Expect = 1e-47
 Identities = 92/165 (55%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
 Frame = +1

Query: 1   AVVAPSCAPAESLS-KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETL 177
           A  +   + +ES S K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET 
Sbjct: 17  AAASSGVSTSESTSVKAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETF 76

Query: 178 SYLPPLSSEQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFG 357
           SYLPPLS + IAKQV++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFG
Sbjct: 77  SYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFG 136

Query: 358 CQDAAAVLREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 492
           CQD+A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 137 CQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARPN 181