DK946576
Clone id YMU02A01NGRL0013_B02
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_B02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAACTTTATCTTCGCAGAAAA
TATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCAT
TCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAAT
ACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGT
CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGG
AATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAGCGGGATCCCT
CGTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P33434
Definition sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
Align length 43
Score (bit) 31.6
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946576|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_B02, 5'
(465 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ... 32 1.8
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ... 32 1.8
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN... 32 1.8
sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic... 31 2.3
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.1
sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein ... 30 6.7
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c... 30 6.7

>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
GN=Mmp2 PE=2 SV=1
Length = 662

Score = 31.6 bits (70), Expect = 1.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
GN=MMP2 PE=1 SV=2
Length = 660

Score = 31.6 bits (70), Expect = 1.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
GN=MMP2 PE=2 SV=1
Length = 661

Score = 31.6 bits (70), Expect = 1.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +2

Query: 248 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 394
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
GN=Mmp2 PE=2 SV=2
Length = 662

Score = 31.2 bits (69), Expect = 2.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2

Query: 218 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 382
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q6GN91|NT5D3_XENLA 5'-nucleotidase domain-containing protein 3
OS=Xenopus laevis GN=nt5dc3 PE=2 SV=1
Length = 499

Score = 29.6 bits (65), Expect = 6.7
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2

Query: 125 TYFLRR*SFFLSVNLAEIRS-LNYQNHCETSHTFTTKLYPLR 3
TYFLRR S F + + + S LNY H HTF K PL+
Sbjct: 435 TYFLRRLSRFADIYMESLSSLLNYDLH----HTFYPKRTPLQ 472


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
cuniculus GN=MMP2 PE=2 SV=1
Length = 662

Score = 29.6 bits (65), Expect = 6.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTLLP 23
W NKKT+IF DK + + + + DP ++ A +P
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIADAWNAIP 616


tr_hit_id Q54CB7
Definition tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 55
Score (bit) 32.7
E-value 9.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946576|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_B02, 5'
(465 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.1

>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2

Query: 239 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 403
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796