DK946580 |
Clone id |
YMU02A01NGRL0013_B08 |
Library |
YMU02 |
Length |
590 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_B08. 5' end sequence. |
Accession |
DK946580 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL128Contig1 |
Sequence |
CTCATGGTGACTTTGGACAACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGA GATGAAGCCATCAGGCAGAAGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAG CTGCAAGAGCAGGCTGAGGCGATCCTCAAGGCCGCACGTGCAGAGACCACGGCGGAGCTC AACAAGATGAAGAGGGAGACGGCAGCAAAGCTTGATGCCAAGCTTCAGGAATCACGCGAA AGAATAGAGAAAGAGCTTGCAGAAGCTATTGCAAACCTAGAGGTGCAGAAGCAGGAGACT TTGAAGAGCCTTGACAAGGAAGTCCAAGATCTAAGTGAGGAGATTATTGCTAAGGTCATT CCCTTCAAGATATGAGATGTGAGTTCGTCCTATTTTTTTGCTCCTTGCACTTCATTTCCG GCTGGAGCGAGAGGCCCTTTCAACAATGCCCCCTCTCGCCCTGTTGTACCCGATCATGTA ATTTGTCCAAATGTAATTGCCTCTCACATTGATAATGCCATGTGCAAGACCTGGCTGAAT TCACCATGTGAATGTACTGTGTATATNTGAGCTATTGTAGCTTCGGATTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
121 |
Score (bit) |
130.0 |
E-value |
4.0e-30 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946580|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_B08, 5' (590 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 130 4e-30 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 75 2e-13 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 73 1e-12 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 72 2e-12 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 72 3e-12 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 64 7e-10 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 62 2e-09 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 61 5e-09 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 60 8e-09 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 59 1e-08 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 58 3e-08 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 58 3e-08 sp|P26681|ATPF_ENTHR ATP synthase B chain OS=Enterococcus hirae ... 48 4e-05 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 46 2e-04 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 45 2e-04 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 44 6e-04 sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1 44 8e-04 sp|A2AJI0|MA7D1_MOUSE MAP7 domain-containing protein 1 OS=Mus mu... 43 0.001 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 43 0.001 sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen... 42 0.002 sp|Q9Y4D1|DAAM1_HUMAN Disheveled-associated activator of morphog... 42 0.002 sp|Q8CJ40|CROCC_MOUSE Rootletin OS=Mus musculus GN=Crocc PE=1 SV=1 41 0.005 sp|P57120|ATPF_BUCAI ATP synthase B chain OS=Buchnera aphidicola... 41 0.005 sp|Q9UPV0|CE164_HUMAN Centrosomal protein of 164 kDa OS=Homo sap... 40 0.007 sp|O27351|DNAK_METTH Chaperone protein dnaK OS=Methanobacterium ... 40 0.009 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 40 0.009 sp|O51876|ATPF_BUCAP ATP synthase B chain OS=Buchnera aphidicola... 40 0.009 sp|Q48329|VATE_HALVO V-type ATP synthase subunit E OS=Halobacter... 40 0.011 sp|Q62209|SYCP1_MOUSE Synaptonemal complex protein 1 OS=Mus musc... 40 0.011 sp|Q15149|PLEC1_HUMAN Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3 40 0.011
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 130 bits (328), Expect = 4e-30 Identities = 61/121 (50%), Positives = 93/121 (76%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 LM LD I++ P+ MD RD +I+++L V+D S E+K+L+EQA A+++AARAE +A L Sbjct: 100 LMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAAL 159
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 NKMK+ET +++AKL E R++IE EL EA+ +LE QK++T+KSLD ++ LS++I+ KV+ Sbjct: 160 NKMKKETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVL 219
Query: 361 P 363 P Sbjct: 220 P 220
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 75.1 bits (183), Expect = 2e-13 Identities = 41/124 (33%), Positives = 70/124 (56%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 LM+ L+ +++KP+ K++D+R E I+ + +L Q E + AR + Sbjct: 38 LMLILNAVFYKPLIKILDERKEYIQSNFNEAEKCLAQAAELTTQYETKITDARQNASKLT 97
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 N + E + KL+E++++ + ELA A LE+QK E LKSL+ EVQ LS +I+ K++ Sbjct: 98 NTTRSEIQRFVSEKLEEAQKKADSELASATNKLELQKDEALKSLESEVQTLSTKILEKLL 157
Query: 361 PFKI 372 +I Sbjct: 158 GIQI 161
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 72.8 bits (177), Expect = 1e-12 Identities = 41/120 (34%), Positives = 69/120 (57%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 LMV L+ I++KPV KV+D+RDE IR L + + +L + E L AR ++ Sbjct: 33 LMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADELAAKYEEDLSEARRNAQLKI 92
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 ++E + +++++ EK +AEA L VQK+E LK+L+ +V LS++I K++ Sbjct: 93 ASSQKEAQNIVSEDIKKAQLNAEKLIAEASKQLNVQKEEALKTLENQVDTLSDQIKVKLL 152
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 72.0 bits (175), Expect = 2e-12 Identities = 37/120 (30%), Positives = 70/120 (58%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 L V L+ + +KP+ + +D+RDE IR L ++ + +L Q E L R E A + Sbjct: 39 LTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELANQYEQELAYTRREAQAII 98
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 + + E A++ +++ ++ EL +A A ++ QKQ TL++L+ +V LSE+++AK++ Sbjct: 99 EEARAEAQKIATAEIAAAQQALQAELMKAQAEIDQQKQATLQALEGQVSSLSEQLLAKLL 158
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 71.6 bits (174), Expect = 3e-12 Identities = 37/120 (30%), Positives = 71/120 (59%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 LM+ L+ I++KPV K++D+RDE IR L + + +L + E L AR + A++ Sbjct: 33 LMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADELAAKYEEDLSKARRDAQAKI 92
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 +++ + + +++++ EK + EA L +QK+E LK+L+ +V LS++I K++ Sbjct: 93 AASQKDAQSIVSEDIKKAQMNAEKLITEASKQLNIQKEEALKTLEDQVDTLSDQIKTKLL 152
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 63.5 bits (153), Expect = 7e-10 Identities = 35/119 (29%), Positives = 70/119 (58%) Frame = +1
Query: 4 MVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELN 183 MV L+ +++ PVAKV+D+R+E IR+ L D + + + +Q E L R E ++ Sbjct: 39 MVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEAITKQYEKDLAQERREAQLIIS 98
Query: 184 KMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 ++E + +++++++ E + EA + L QKQ+ L +L+ +V L+E+I +K++ Sbjct: 99 VAQKEAQDIVALEIKQAQKDTELLVNEATSQLNSQKQKALSALEDQVNTLTEQIKSKLL 157
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 62.0 bits (149), Expect = 2e-09 Identities = 34/120 (28%), Positives = 65/120 (54%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 L+ L+ +++KP KV+DDRD+ +R + E+K L Q E L A R ++ A + Sbjct: 36 LVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKALTAQYEQELAATRKQSQALI 95
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 + + E +L E++ + + +A ++ QK L++LD++V LS +I+ K++ Sbjct: 96 AEAQTEAGRIAAQQLAEAQREAQAQREQAQQEIDQQKAVALQALDQQVDALSHQILDKLL 155
>sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific OS=Propionigenium modestum GN=atpF PE=1 SV=2 Length = 168
Score = 60.8 bits (146), Expect = 5e-09 Identities = 36/124 (29%), Positives = 63/124 (50%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 LM + KP+AKV+D R E I L + + K +A+ I+K+A+ E L Sbjct: 25 LMFFFKKYFQKPIAKVLDARKEKIANDLKQAEIDKEMAAKANGEAQGIVKSAKTEANEML 84
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 + +++ + + L+E+ + EK L A +E K++ K L EV DL+ ++ K+I Sbjct: 85 LRAEKKADERKETILKEANTQREKMLKSAEVEIEKMKEQARKELQLEVTDLAVKLAEKMI 144
Query: 361 PFKI 372 K+ Sbjct: 145 NEKV 148
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 60.1 bits (144), Expect = 8e-09 Identities = 31/120 (25%), Positives = 73/120 (60%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 +M+ LD ++KP+ KV+ DR+ I + L S S++ K+ + E ++ ++ E+ + Sbjct: 34 IMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKETLARYEEVILKSKKESQQLI 93
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 + +K +T + +L +++ + ++++I L +K++TLK L+++ ++LS++I K+I Sbjct: 94 DSIKTKTEHDIVNELIQTQNSTREFISKSIKELYRKKEQTLKVLEEDTENLSDKIYLKLI 153
>sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. (strain PCC 6803) GN=atpG PE=3 SV=1 Length = 143
Score = 59.3 bits (142), Expect = 1e-08 Identities = 33/120 (27%), Positives = 64/120 (53%) Frame = +1
Query: 1 LMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAEL 180 L L+ I++KP+ KV+D+R + IR R+ + K + ++ E + AR ++ A + Sbjct: 18 LAFLLNAIFYKPMNKVLDERADYIRTNEEDARERLAKAKAITQEYEQQITDARRQSQAVI 77
Query: 181 NKMKRETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 360 + E K+ E++ +++ A +E Q+Q L SL++EV LS +I+ K++ Sbjct: 78 ADAQAEARRLAAEKIAEAQRESQRQKETAAQEIEAQRQSALSSLEQEVAALSNQILHKLL 137
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T949 |
Definition |
tr|A9T949|A9T949_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
124 |
Score (bit) |
181.0 |
E-value |
2.0e-44 |
Report |
 |