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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946594
Clone id YMU02A01NGRL0013_B23
Library
Length 172
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_B23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATTTCCGAACAGGCGAAAACCCTTGGTGGTCATAGTCATCTTTCATTTGTATTGCAAGG
CTCCCATTTGTTAAAAGTTATCCATTACAAGGCTATTGAGCTCTTGTGCTGTATGTAACA
TTATCAATTGTCAATGGCGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O49078
Definition sp|O49078|UCRIA_FRIAG Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis
Align length 11
Score (bit) 32.3
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946594|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_B23, 5'
         (142 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O49078|UCRIA_FRIAG Cytochrome b6-f complex iron-sulfur subuni...    32   0.74 
sp|Q0I872|UCRI_SYNS3 Cytochrome b6-f complex iron-sulfur subunit...    30   3.7  
sp|Q5N5B0|UCRI_SYNP6 Cytochrome b6-f complex iron-sulfur subunit...    30   3.7  
sp|Q31NV7|UCRI_SYNE7 Cytochrome b6-f complex iron-sulfur subunit...    30   3.7  
sp|Q69S39|UCRIA_ORYSJ Cytochrome b6-f complex iron-sulfur subuni...    30   3.7  
sp|Q9L3P9|UCRIA_ANAVT Cytochrome b6-f complex iron-sulfur subuni...    30   3.7  
sp|Q93SX0|UCRIA_ANASP Cytochrome b6-f complex iron-sulfur subuni...    30   3.7  
sp|Q7X9A6|UCRIA_WHEAT Cytochrome b6-f complex iron-sulfur subuni...    30   4.8  
sp|P30361|UCRIA_TOBAC Cytochrome b6-f complex iron-sulfur subuni...    29   6.3  
sp|P08980|UCRIA_SPIOL Cytochrome b6-f complex iron-sulfur subuni...    29   6.3  
sp|A5GMW1|UCRI_SYNPW Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|A2BPU5|UCRI_PROMS Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|Q7V2L4|UCRI_PROMP Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|Q7V654|UCRI_PROMM Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|Q31C72|UCRI_PROM9 Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|A2BVC4|UCRI_PROM5 Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|A2C7F6|UCRI_PROM3 Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|A8G3H7|UCRI_PROM2 Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|A3PBI5|UCRI_PROM0 Cytochrome b6-f complex iron-sulfur subunit...    29   8.2  
sp|Q7XYM4|UCRIA_BIGNA Cytochrome b6-f complex iron-sulfur subuni...    29   8.2  

>sp|O49078|UCRIA_FRIAG Cytochrome b6-f complex iron-sulfur subunit,
           chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1
          Length = 230

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTGENPWWS
Sbjct: 220 DFRTGENPWWS 230


>sp|Q0I872|UCRI_SYNS3 Cytochrome b6-f complex iron-sulfur subunit
           OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1
          Length = 178

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTGE PWWS
Sbjct: 168 DFRTGEKPWWS 178


>sp|Q5N5B0|UCRI_SYNP6 Cytochrome b6-f complex iron-sulfur subunit
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=petC PE=3 SV=1
          Length = 179

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTG+NPWW+
Sbjct: 169 DFRTGDNPWWA 179


>sp|Q31NV7|UCRI_SYNE7 Cytochrome b6-f complex iron-sulfur subunit
           OS=Synechococcus elongatus (strain PCC 7942) GN=petC
           PE=3 SV=1
          Length = 179

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTG+NPWW+
Sbjct: 169 DFRTGDNPWWA 179


>sp|Q69S39|UCRIA_ORYSJ Cytochrome b6-f complex iron-sulfur subunit,
           chloroplastic OS=Oryza sativa subsp. japonica GN=petC
           PE=1 SV=1
          Length = 225

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTG+NPWW+
Sbjct: 215 DFRTGDNPWWA 225


>sp|Q9L3P9|UCRIA_ANAVT Cytochrome b6-f complex iron-sulfur subunit 1
           OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
           GN=petC PE=3 SV=1
          Length = 179

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTGE PWWS
Sbjct: 169 DFRTGEEPWWS 179


>sp|Q93SX0|UCRIA_ANASP Cytochrome b6-f complex iron-sulfur subunit 1
           OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=3 SV=1
          Length = 179

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTGE PWWS
Sbjct: 169 DFRTGEEPWWS 179


>sp|Q7X9A6|UCRIA_WHEAT Cytochrome b6-f complex iron-sulfur subunit,
           chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1
          Length = 222

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 1   DFRTGENPWW 30
           DFRTG+NPWW
Sbjct: 212 DFRTGDNPWW 221


>sp|P30361|UCRIA_TOBAC Cytochrome b6-f complex iron-sulfur subunit
           1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2
          Length = 228

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTGE+PWW+
Sbjct: 218 DFRTGEDPWWA 228


>sp|P08980|UCRIA_SPIOL Cytochrome b6-f complex iron-sulfur subunit,
           chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2
          Length = 230

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 1   DFRTGENPWWS 33
           DFRTGE PWWS
Sbjct: 219 DFRTGEAPWWS 229
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946594|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_B23, 5'
         (142 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******