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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946596
Clone id YMU02A01NGRL0013_C02
Library
Length 188
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_C02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ACTCTCAGCAACGGATATCTTGGCTCTTGCAACGATGAAGAACGCAGCGAAATGCGATAC
GTAGTGTGAATTGCAGAATTCCGCGAATCATCGAGTCTTTGAACGCAACTTGCGCCCGCG
GCTCGTCCAAGGGCATGTCTGCCTGAGCGTCCACACGACAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8TGM5
Definition sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 OS=Saccharomyces cerevisiae
Align length 42
Score (bit) 65.9
E-value 6.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946596|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_C02, 5'
         (159 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 OS=Saccharomyc...    66   6e-11
sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN ...    30   2.9  

>sp|Q8TGM5|ART3_YEAST Uncharacterized protein ART3 OS=Saccharomyces
           cerevisiae GN=ART3 PE=2 SV=1
          Length = 67

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = -2

Query: 128 GRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           G   GA CVQR DDSRNSAIH TYRISLRSSS++EPR PLL+
Sbjct: 4   GIPRGAMCVQRFDDSRNSAIHITYRISLRSSSMREPRDPLLK 45


>sp|O93574|RELN_CHICK Reelin (Fragment) OS=Gallus gallus GN=RELN
           PE=2 SV=1
          Length = 3209

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 106 AFKDSMIRGILQFTLRIAFRCVLHRCKSQD 17
           AF DS     LQFTLR+  + VL  CK+ D
Sbjct: 508 AFLDSSQSRFLQFTLRLGSKSVLSTCKAPD 537
tr_hit_id A9U5J8
Definition tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 50
Score (bit) 89.4
E-value 8.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946596|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_C02, 5'
         (159 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella paten...    89   8e-17
tr|A9U7C6|A9U7C6_PHYPA Predicted protein (Fragment) OS=Physcomit...    82   1e-14
tr|A9U5X4|A9U5X4_PHYPA Predicted protein (Fragment) OS=Physcomit...    82   1e-14
tr|A9U5I5|A9U5I5_PHYPA Predicted protein (Fragment) OS=Physcomit...    82   1e-14
tr|A9U6L7|A9U6L7_PHYPA Predicted protein (Fragment) OS=Physcomit...    80   4e-14
tr|A9U701|A9U701_PHYPA Predicted protein (Fragment) OS=Physcomit...    65   2e-09
tr|Q0WWS3|Q0WWS3_ARATH Putative uncharacterized protein (Fragmen...    60   4e-08
tr|B8CEF4|B8CEF4_THAPS Predicted protein OS=Thalassiosira pseudo...    59   9e-08
tr|A7TBY8|A7TBY8_NEMVE Predicted protein (Fragment) OS=Nematoste...    59   2e-07
tr|A7T6D5|A7T6D5_NEMVE Predicted protein OS=Nematostella vectens...    59   2e-07
tr|A7T247|A7T247_NEMVE Predicted protein (Fragment) OS=Nematoste...    59   2e-07
tr|A7T1X6|A7T1X6_NEMVE Predicted protein (Fragment) OS=Nematoste...    59   2e-07
tr|A7T0Y8|A7T0Y8_NEMVE Predicted protein (Fragment) OS=Nematoste...    59   2e-07
tr|A7SUZ1|A7SUZ1_NEMVE Predicted protein OS=Nematostella vectens...    59   2e-07
tr|A7SPZ6|A7SPZ6_NEMVE Predicted protein OS=Nematostella vectens...    59   2e-07
tr|A7SPZ2|A7SPZ2_NEMVE Predicted protein OS=Nematostella vectens...    59   2e-07
tr|A7SPY5|A7SPY5_NEMVE Predicted protein OS=Nematostella vectens...    59   2e-07
tr|A7SI01|A7SI01_NEMVE Predicted protein OS=Nematostella vectens...    59   2e-07
tr|A7T0Z3|A7T0Z3_NEMVE Predicted protein (Fragment) OS=Nematoste...    57   4e-07
tr|A7SUY5|A7SUY5_NEMVE Predicted protein OS=Nematostella vectens...    57   4e-07
tr|A7SUZ5|A7SUZ5_NEMVE Predicted protein (Fragment) OS=Nematoste...    57   5e-07
tr|A7SWL8|A7SWL8_NEMVE Predicted protein OS=Nematostella vectens...    56   1e-06
tr|A7TBQ8|A7TBQ8_NEMVE Predicted protein OS=Nematostella vectens...    55   1e-06
tr|A7SUL5|A7SUL5_NEMVE Predicted protein OS=Nematostella vectens...    55   1e-06
tr|A7TC50|A7TC50_NEMVE Predicted protein (Fragment) OS=Nematoste...    55   2e-06
tr|A7T0Q6|A7T0Q6_NEMVE Predicted protein (Fragment) OS=Nematoste...    55   2e-06
tr|Q00Y82|Q00Y82_OSTTA Chromosome 12 contig 1, DNA sequence OS=O...    51   3e-05
tr|B3SDB9|B3SDB9_TRIAD Putative uncharacterized protein OS=Trich...    50   6e-05
tr|B3SAB1|B3SAB1_TRIAD Putative uncharacterized protein OS=Trich...    50   6e-05
tr|A4S1P2|A4S1P2_OSTLU Predicted protein OS=Ostreococcus lucimar...    47   6e-04

>tr|A9U5J8|A9U5J8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_102707 PE=4 SV=1
          Length = 220

 Score = 89.4 bits (220), Expect = 8e-17
 Identities = 43/50 (86%), Positives = 45/50 (90%)
 Frame = -3

Query: 157 RVDAQADMPLDEPRAQVAFKDSMIRGILQFTLRIAFRCVLHRCKSQDIRC 8
           R DA A MP DEPRAQ+AFK+SMI GILQFTLRIAFRCVLHRCKSQDIRC
Sbjct: 171 RDDALAGMPSDEPRAQLAFKNSMIHGILQFTLRIAFRCVLHRCKSQDIRC 220


>tr|A9U7C6|A9U7C6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_158157 PE=4 SV=1
          Length = 148

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/42 (92%), Positives = 42/42 (100%)
 Frame = -2

Query: 128 GRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           GRA+GA+CVQ+LDDSRNSAIHTTYRISLRSSSLQEPRYPLLR
Sbjct: 1   GRASGATCVQKLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 42


>tr|A9U5X4|A9U5X4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_157309 PE=4 SV=1
          Length = 148

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/42 (92%), Positives = 42/42 (100%)
 Frame = -2

Query: 128 GRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           GRA+GA+CVQ+LDDSRNSAIHTTYRISLRSSSLQEPRYPLLR
Sbjct: 1   GRASGATCVQKLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 42


>tr|A9U5I5|A9U5I5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_157118 PE=4 SV=1
          Length = 130

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/42 (92%), Positives = 42/42 (100%)
 Frame = -2

Query: 128 GRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           GRA+GA+CVQ+LDDSRNSAIHTTYRISLRSSSLQEPRYPLLR
Sbjct: 1   GRASGATCVQKLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 42


>tr|A9U6L7|A9U6L7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_157771 PE=4 SV=1
          Length = 88

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 38/42 (90%), Positives = 42/42 (100%)
 Frame = -2

Query: 128 GRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           GRA+GA+CVQ+LDDSR+SAIHTTYRISLRSSSLQEPRYPLLR
Sbjct: 1   GRASGATCVQKLDDSRDSAIHTTYRISLRSSSLQEPRYPLLR 42


>tr|A9U701|A9U701_PHYPA Predicted protein (Fragment)
          OS=Physcomitrella patens subsp. patens
          GN=PHYPADRAFT_158040 PE=4 SV=1
          Length = 138

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = -2

Query: 98 RLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
          +LDDSRNSAIHTTYRISLRSSSLQEPRYPLLR
Sbjct: 1  KLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 32


>tr|Q0WWS3|Q0WWS3_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 80

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 29/40 (72%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +2

Query: 35  MKNAAKCDT*CELQNSANHRVFERNLRPR-LVQGHVCLSV 151
           MKN AKCDT CELQN  NHRVFER LRP+   +GHVCL V
Sbjct: 1   MKNVAKCDTWCELQNPVNHRVFERKLRPKPSGRGHVCLGV 40


>tr|B8CEF4|B8CEF4_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_30335 PE=4 SV=1
          Length = 79

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = -3

Query: 121 PRAQVAFKDSMIRGILQFTLRIAFRCVLHRCKSQDIRC 8
           P+AQ AFK  MI  +LQF LRIAFRCVLHRC  QDI C
Sbjct: 42  PKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDIHC 79


>tr|A7TBY8|A7TBY8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g154198 PE=4 SV=1
          Length = 58

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/43 (67%), Positives = 32/43 (74%)
 Frame = -2

Query: 131 LGRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           LG+   A CVQR DDS NSAIHTTYR  LRSSS+ EPR P L+
Sbjct: 3   LGKPKSAICVQRFDDSLNSAIHTTYRTWLRSSSMHEPRDPPLK 45


>tr|A7T6D5|A7T6D5_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g147740 PE=4 SV=1
          Length = 59

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 29/43 (67%), Positives = 32/43 (74%)
 Frame = -2

Query: 131 LGRAAGASCVQRLDDSRNSAIHTTYRISLRSSSLQEPRYPLLR 3
           LG+   A CVQR DDS NSAIHTTYR  LRSSS+ EPR P L+
Sbjct: 3   LGKPKSAICVQRFDDSLNSAIHTTYRTWLRSSSMHEPRDPPLK 45