DK946610 |
Clone id |
YMU02A01NGRL0013_C17 |
Library |
YMU02 |
Length |
644 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_C17. 5' end sequence. |
Accession |
DK946610 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL6Contig1 |
Sequence |
CAGCCGAACGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAG AAGCCATGGCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCG CTGCTTCTCTGAAGTCGGAATTCTCCTAAGCTATCCGCCCGCTCCCTCAGAATCGAGGCA AGTGGTGTCAAGAAGATCTCGACCAAAACTCCCTTGGGACCTTCCGGCGATACCAAATTC AAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAAGGGAAAGGGAGTCTACCAATATACC AAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATCTATGTCCCAGAGGAATGGTCA ACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAGTTACCCTC GGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCTTGCTCAATGA TTGCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCGTCTTCCATGT CTCACCTATTGCCTTGTATATTCTGACAGTCTTGAAAATGAAAAAATGTAGCTCCTTGTG AATTGCCTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
105 |
Score (bit) |
129.0 |
E-value |
1.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946610|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_C17, 5' (613 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 129 1e-29 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 129 1e-29 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 128 3e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 126 8e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 126 1e-28 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 125 1e-28 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 124 3e-28
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 129 bits (324), Expect = 1e-29 Identities = 64/105 (60%), Positives = 71/105 (67%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYSPIY Sbjct: 34 SFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIY 93
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 477 +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 94 NTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 129 bits (324), Expect = 1e-29 Identities = 64/105 (60%), Positives = 71/105 (67%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY KYGANVDGYSPIY Sbjct: 34 SFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIY 93
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 477 +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 94 NTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 128 bits (321), Expect = 3e-29 Identities = 62/105 (59%), Positives = 72/105 (68%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ KYGANVDGYSPIY Sbjct: 32 SFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIY 91
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 477 ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 92 NTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 126 bits (317), Expect = 8e-29 Identities = 64/105 (60%), Positives = 70/105 (66%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 S RI ASGVKKI T P G +G + +DASGRK KG GVY++ KYGANVDGYSPIY Sbjct: 37 SFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIY 96
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 477 +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 97 NEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 126 bits (316), Expect = 1e-28 Identities = 63/104 (60%), Positives = 68/104 (65%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 SL I A KK+ T P GP G FK +DASGR AKGKGVYQ+ KYGANVDGYSPIY Sbjct: 34 SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIY 93
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 474 PEEWS SGD Y G TGL +WAVT VY+TSALA Sbjct: 94 TPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 125 bits (315), Expect = 1e-28 Identities = 64/105 (60%), Positives = 69/105 (65%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y KYGANVDGYSPIY Sbjct: 36 SFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIY 95
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 477 EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 96 NENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 124 bits (312), Expect = 3e-28 Identities = 62/105 (59%), Positives = 69/105 (65%) Frame = +1
Query: 163 SLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIY 342 S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ KYGANVDGYSPIY Sbjct: 36 SFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIY 95
Query: 343 VPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 477 EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 96 NEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PIM0 |
Definition |
tr|A9PIM0|A9PIM0_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
106 |
Score (bit) |
136.0 |
E-value |
8.0e-31 |
Report |
|