DK946636 |
Clone id |
YMU02A01NGRL0013_E01 |
Library |
YMU02 |
Length |
654 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_E01. 5' end sequence. |
Accession |
DK946636 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL317Contig1 |
Sequence |
GAGCACTGTGGGTAGCCATGGCAGTGGCAACGCTTCCTTTTTCGCGCCTCTCCCTTCTCC ACTCCTCGACCTCCTCCTCCGCCTCCATCTCTCCTCCCAAATCTGGAAATCTGCGTCTCG CCTCCTCGCACAGTTTCGCCATTACTCCACTAGCTCACGTGGCCTTTAGGGGATTCTCCA TCTCCAACGTCAGACGGCGTTCATCTATTATAGTTGCCGCAGCTGCTCCAACCCAGAAAA CGAAGGCTGATTCTGCTGTCAAGAGAGCTCGTCAAGCAGAGAAACGGCGCGTGCGTAACA AGGCTCGTAAATCAGAGATTCGCACTCGCATGAAGAAGGTTTTTGTTGCGATAGAGGGCC TGAAGAAGGATGCAAGTGCTTCTGAAGAGATGCTATCCCCCATTGAAACTCTTATTGGTG AGGCTTTCTCGACTATTGACAAAGCAGTGAAAATTGGAACACTTCATAGGAATACTGGAG CCCGCAGGAAGTCTAGATTGTCACGCGCAAAAAAGGTTTTGGAAGTGGAGCAGGGGTGGT ATACCCCAACCCCTGCCACTGCCACTGCCACGGCTGTGTAAGTTGAAAACTTGAGAGAAC CCTTGAAGCCGGTCAATATTTAATGATGCCCTTTTGCTGAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ASV6 |
Definition |
sp|Q9ASV6|RR20_ARATH 30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana |
Align length |
100 |
Score (bit) |
113.0 |
E-value |
9.0e-25 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P1S0 |
Definition |
tr|A7P1S0|A7P1S0_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
100 |
Score (bit) |
120.0 |
E-value |
9.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946636|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_E01, 5' (639 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P1S0|A7P1S0_VITVI Chromosome chr19 scaffold_4, whole genome... 120 9e-26 tr|A9NTN6|A9NTN6_PICSI Putative uncharacterized protein OS=Picea... 117 5e-25 tr|A9NV81|A9NV81_PICSI Putative uncharacterized protein OS=Picea... 116 1e-24 tr|A9TU81|A9TU81_PHYPA Predicted protein (Fragment) OS=Physcomit... 105 2e-21 tr|Q0JKF5|Q0JKF5_ORYSJ cDNA clone:001-110-B01, full insert seque... 96 2e-18 tr|A2WTS1|A2WTS1_ORYSI Putative uncharacterized protein OS=Oryza... 96 2e-18 tr|B6UG52|B6UG52_MAIZE Ribosomal protein rpS20 OS=Zea mays PE=2 ... 95 4e-18 tr|B4FR87|B4FR87_MAIZE Putative uncharacterized protein OS=Zea m... 95 4e-18 tr|A9SME7|A9SME7_PHYPA Predicted protein (Fragment) OS=Physcomit... 91 8e-17 tr|A4RT68|A4RT68_OSTLU Predicted protein (Fragment) OS=Ostreococ... 73 1e-11 tr|Q01E25|Q01E25_OSTTA Homology to unknown gene OS=Ostreococcus ... 71 6e-11 tr|A8JDN4|A8JDN4_CHLRE Plastid ribosomal protein S20 OS=Chlamydo... 70 1e-10 tr|Q110G9|Q110G9_TRIEI SSU ribosomal protein S20P OS=Trichodesmi... 69 3e-10 tr|A3Z9C5|A3Z9C5_9SYNE Ribosomal protein S20 OS=Synechococcus sp... 69 3e-10 tr|B7KG02|B7KG02_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 68 4e-10 tr|B4B2V9|B4B2V9_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 66 2e-09 tr|Q063W2|Q063W2_9SYNE 30S ribosomal protein S20 OS=Synechococcu... 66 2e-09 tr|Q4C3X9|Q4C3X9_CROWT Ribosomal protein S20p OS=Crocosphaera wa... 65 3e-09 tr|B5VU91|B5VU91_SPIMA Ribosomal protein S20 OS=Arthrospira maxi... 65 3e-09 tr|Q7XYL1|Q7XYL1_BIGNA Ribosomal protein rpS20 OS=Bigelowiella n... 65 3e-09 tr|A0ZH94|A0ZH94_NODSP 30S ribosomal protein S20 OS=Nodularia sp... 64 8e-09 tr|A4CR12|A4CR12_SYNPV 30S ribosomal protein S20 OS=Synechococcu... 64 1e-08 tr|A8YIQ3|A8YIQ3_MICAE RpsT protein OS=Microcystis aeruginosa PC... 63 1e-08 tr|B1WZT9|B1WZT9_CYAA5 30S ribosomal protein S20 OS=Cyanothece (... 63 2e-08 tr|B8HTW2|B8HTW2_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 63 2e-08 tr|B7JWV1|B7JWV1_SYNP8 Ribosomal protein S20 OS=Synechococcus sp... 62 3e-08 tr|B4C2P5|B4C2P5_9CHRO Ribosomal protein S20 OS=Cyanothece sp. P... 62 3e-08 tr|B1X3N1|B1X3N1_PAUCH 30S ribosomal protein S20 OS=Paulinella c... 62 3e-08 tr|Q05WE5|Q05WE5_9SYNE 30S ribosomal protein S20 OS=Synechococcu... 61 7e-08 tr|B5ILX7|B5ILX7_9CHRO Ribosomal protein S20 OS=Cyanobium sp. PC... 60 1e-07
>tr|A7P1S0|A7P1S0_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027731001 PE=4 SV=1 Length = 183
Score = 120 bits (300), Expect = 9e-26 Identities = 61/100 (61%), Positives = 69/100 (69%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 KADSA KR RQAEKRR+ NKARKSEIRTRMKKV ++GLKK A E + PIE LI E Sbjct: 76 KADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLKKKPDAQAEEVLPIEKLIAE 135
Query: 423 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 A+S IDKAVK+GTLHRNTG +E+ GWY Sbjct: 136 AYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWY 175
>tr|A9NTN6|A9NTN6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 178
Score = 117 bits (294), Expect = 5e-25 Identities = 61/100 (61%), Positives = 71/100 (71%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 K DSA KRARQAEKRR+ NK+ KSEI+TRM+KVF A+ LKK S S E L PIE LI E Sbjct: 73 KPDSAAKRARQAEKRRIYNKSHKSEIKTRMRKVFEALGKLKKATSPSPEDLIPIEKLIAE 132
Query: 423 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 A+S+IDKAVK+GTLHRNTG V+E+ GWY Sbjct: 133 AYSSIDKAVKVGTLHRNTGGHRKSRLSRRKKVVEIHHGWY 172
>tr|A9NV81|A9NV81_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 178
Score = 116 bits (290), Expect = 1e-24 Identities = 60/100 (60%), Positives = 70/100 (70%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 K DSA KRARQAEKRR+ NK+ KSEI+TRM+KVF A+ LKK S S E L PIE LI E Sbjct: 73 KPDSAAKRARQAEKRRIYNKSHKSEIKTRMRKVFEALGKLKKATSPSPEDLIPIEKLIAE 132
Query: 423 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 A+S+IDKAVK+GTLHRNTG +E+ GWY Sbjct: 133 AYSSIDKAVKVGTLHRNTGGHRKSRLSRRKKAVEIHHGWY 172
>tr|A9TU81|A9TU81_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_8053 PE=4 SV=1 Length = 125
Score = 105 bits (262), Expect = 2e-21 Identities = 55/100 (55%), Positives = 66/100 (66%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 K D A KRARQ EKRRV +KA+KSE+ TRMKKVFVA++GLKK A+EE PIE LIGE Sbjct: 14 KPDQADKRARQNEKRRVYHKAKKSEVSTRMKKVFVALDGLKKKTDATEEDFKPIEKLIGE 73
Query: 423 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 AF IDKA K+G+LHRN + ++ G Y Sbjct: 74 AFKIIDKAAKVGSLHRNKAGHQKSRLSRAKRTMMIQLGLY 113
>tr|Q0JKF5|Q0JKF5_ORYSJ cDNA clone:001-110-B01, full insert sequence OS=Oryza sativa subsp. japonica GN=Os01g0678600 PE=2 SV=1 Length = 196
Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/100 (47%), Positives = 63/100 (63%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 + DS KR RQ ++ R+RN ARK+E+RTRMKKV A+E L+K A A+ E + IE I E Sbjct: 87 RPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISE 146
Query: 423 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 A+ IDK VK+G +HRNTG +E+ +GWY Sbjct: 147 AYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWY 186
>tr|A2WTS1|A2WTS1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03263 PE=4 SV=1 Length = 196
Score = 95.5 bits (236), Expect = 2e-18 Identities = 47/100 (47%), Positives = 63/100 (63%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 + DS KR RQ ++ R+RN ARK+E+RTRMKKV A+E L+K A A+ E + IE I E Sbjct: 87 RPDSVKKRERQNDRHRIRNHARKAEMRTRMKKVLKALEKLRKKADATPEDIIQIEKWISE 146
Query: 423 AFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 A+ IDK VK+G +HRNTG +E+ +GWY Sbjct: 147 AYKAIDKTVKVGAMHRNTGNHRKSLLARRKKAIEILRGWY 186
>tr|B6UG52|B6UG52_MAIZE Ribosomal protein rpS20 OS=Zea mays PE=2 SV=1 Length = 194
Score = 94.7 bits (234), Expect = 4e-18 Identities = 48/104 (46%), Positives = 62/104 (59%) Frame = +3
Query: 231 TQKTKADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIET 410 T + DS KR RQ +K R+RN ARK+E+RTRMKKV A+E L+K A E + IE Sbjct: 81 TTGRRPDSVKKRERQNDKHRIRNHARKAEMRTRMKKVLRALEKLRKKPDAQPEEIIEIEK 140
Query: 411 LIGEAFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 LI EA+ IDK VK+G +HRNT +E+ +GWY Sbjct: 141 LIAEAYKAIDKTVKVGAMHRNTANHRKSRLARRKKAIEILRGWY 184
>tr|B4FR87|B4FR87_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 194
Score = 94.7 bits (234), Expect = 4e-18 Identities = 48/104 (46%), Positives = 62/104 (59%) Frame = +3
Query: 231 TQKTKADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIET 410 T + DS KR RQ +K R+RN ARK+E+RTRMKKV A+E L+K A E + IE Sbjct: 81 TTGRRPDSVKKRERQNDKHRIRNHARKAEMRTRMKKVLRALEKLRKKPDAQPEEIIEIEK 140
Query: 411 LIGEAFSTIDKAVKIGTLHRNTGXXXXXXXXXXXXVLEVEQGWY 542 LI EA+ IDK VK+G +HRNT +E+ +GWY Sbjct: 141 LIAEAYKAIDKTVKVGAMHRNTANHRKSRLARRKKAIEILRGWY 184
>tr|A9SME7|A9SME7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18492 PE=4 SV=1 Length = 123
Score = 90.5 bits (223), Expect = 8e-17 Identities = 46/77 (59%), Positives = 57/77 (74%) Frame = +3
Query: 243 KADSAVKRARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGE 422 K D A KRARQ+EKRRV +K++KSEI TRMKKVFVA++ LKK ASEE +E LI E Sbjct: 14 KPDQAAKRARQSEKRRVYHKSKKSEISTRMKKVFVALDVLKKKTDASEEDFKHVEKLISE 73
Query: 423 AFSTIDKAVKIGTLHRN 473 AF IDKA ++ ++H N Sbjct: 74 AFKIIDKAAQVSSIHVN 90
>tr|A4RT68|A4RT68_OSTLU Predicted protein (Fragment) OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_9610 PE=4 SV=1 Length = 84
Score = 73.2 bits (178), Expect = 1e-11 Identities = 39/72 (54%), Positives = 49/72 (68%) Frame = +3
Query: 264 RARQAEKRRVRNKARKSEIRTRMKKVFVAIEGLKKDASASEEMLSPIETLIGEAFSTIDK 443 R R ++K R+ NKARKSEI TRMKKVFV L + +E +S +ETLI EA ++DK Sbjct: 1 RTRLSQKERLYNKARKSEITTRMKKVFVNASELMAADACTEADISGLETLISEATKSVDK 60
Query: 444 AVKIGTLHRNTG 479 AV G LH+NTG Sbjct: 61 AVARGILHKNTG 72
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