NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946637
Clone id YMU02A01NGRL0013_E02
Library
Length 277
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_E02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGG
TGCAGGTCTCCGGCTCCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCA
ATTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTT
ACGAGCTTTTGTGTCCCTGCCACTTTGCATACATAATGAAACAACTTCCCAGTGGTGGCT
TCACTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P08474
Definition sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus
Align length 35
Score (bit) 43.5
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946637|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_E02, 5'
         (247 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...    44   3e-04
sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small cha...    42   0.001
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...    42   0.001
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...    42   0.001
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...    41   0.002
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    41   0.002
sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chai...    41   0.002
sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16132|RBS4_ACECL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16131|RBS3_ACECL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16136|RBS3_ACEAT Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16130|RBS2_ACECL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16135|RBS2_ACEAT Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16129|RBS1_ACECL Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16134|RBS1_ACEAT Ribulose bisphosphate carboxylase small cha...    41   0.002
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...    40   0.003
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...    40   0.003
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...    40   0.003
sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai...    40   0.004
sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai...    40   0.005
sp|Q42516|RBS1_AMAHP Ribulose bisphosphate carboxylase small cha...    40   0.005
sp|P16138|RBS5_ACEAT Ribulose bisphosphate carboxylase small cha...    39   0.006
sp|P16137|RBS4_ACEAT Ribulose bisphosphate carboxylase small cha...    39   0.006
sp|Q9XGX5|RBS2_AMAHP Ribulose bisphosphate carboxylase small cha...    39   0.006
sp|P00873|RBS1_CHLRE Ribulose bisphosphate carboxylase small cha...    39   0.006
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...    39   0.006
sp|P31333|RBS_GOSHI Ribulose bisphosphate carboxylase small chai...    39   0.008
sp|Q38693|RBS7_ACECL Ribulose bisphosphate carboxylase small cha...    39   0.008

>sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1
          Length = 189

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKPSV*TFL 110
           KEYP+AFIRV+GFD  RQVQ    +  KP V  FL
Sbjct: 151 KEYPDAFIRVIGFDNVRQVQCISFIAYKPQVLLFL 185


>sp|O22645|RBS5_FRIAG Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2
           SV=1
          Length = 179

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           KEYP AFIRV+GFD  RQVQ    +V+KP
Sbjct: 150 KEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small chain
           3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2
           SV=1
          Length = 179

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           KEYP AFIRV+GFD  RQVQ    +V+KP
Sbjct: 150 KEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2
           SV=1
          Length = 179

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           KEYP AFIRV+GFD  RQVQ    +V+KP
Sbjct: 150 KEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKPS 95
           KEYP AFIR++GFD+ RQVQ    +  KP+
Sbjct: 149 KEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 3   AKEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           AK YP+AFIRV+GFD  RQVQ    +V KP
Sbjct: 141 AKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           K YP AFIR++GFD KRQVQ+   +  KP
Sbjct: 151 KAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P26985|RBS_BATOE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2
          Length = 175

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           K +P+A+IR++ FDA RQVQ+SG LV +P
Sbjct: 133 KAFPDAYIRLVCFDANRQVQISGFLVHRP 161


>sp|Q38692|RBS6_ACECL Ribulose bisphosphate carboxylase small chain
           6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6
           PE=3 SV=1
          Length = 182

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           K +P+A+IR++ FDA RQVQ+SG LV +P
Sbjct: 140 KAFPDAYIRLVCFDANRQVQISGFLVHRP 168


>sp|P16133|RBS5_ACECL Ribulose bisphosphate carboxylase small chain
           5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5
           PE=2 SV=1
          Length = 184

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 17/29 (58%), Positives = 24/29 (82%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           K +P+A+IR++ FDA RQVQ+SG LV +P
Sbjct: 142 KAFPDAYIRLVCFDANRQVQISGFLVHRP 170
tr_hit_id Q43109
Definition tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small chain (Fragment) OS=Pteris vittata
Align length 31
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946637|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_E02, 5'
         (247 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small c...    57   5e-07
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...    56   8e-07
tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small c...    55   2e-06
tr|A3F6J6|A3F6J6_CUCSA Ribulose bisphosphate carboxylase small c...    44   0.005
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...    42   0.012
tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus m...    41   0.027
tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small c...    41   0.027
tr|Q8RVI7|Q8RVI7_PINPS Ribulose bisphosphate carboxylase small c...    41   0.035
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    41   0.035
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...    41   0.035
tr|B8LPE7|B8LPE7_PICSI Putative uncharacterized protein OS=Picea...    41   0.035
tr|B8LN69|B8LN69_PICSI Putative uncharacterized protein OS=Picea...    41   0.035
tr|A9TYN7|A9TYN7_PHYPA Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A7YVW6|A7YVW6_ACTCH Ribulose bisphosphate carboxylase small c...    41   0.035
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...    41   0.035
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    40   0.045
tr|Q6LBP1|Q6LBP1_LARLA Ribulose bisphosphate carboxylase small c...    40   0.045
tr|Q6LBP0|Q6LBP0_LARLA Ribulose bisphosphate carboxylase small c...    40   0.045
tr|Q39387|Q39387_BATOE Ribulose bisphosphate carboxylase small c...    40   0.045
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    40   0.045
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    40   0.045
tr|Q68BK3|Q68BK3_NANBA Ribulose bisphosphate carboxylase small c...    40   0.059

>tr|Q43109|Q43109_PTEVI Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pteris vittata GN=rbcS3 PE=2 SV=1
          Length = 43

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 3   AKEYPEAFIRVLGFDAKRQVQVSGSLVQKPS 95
           AKEYP AFIRVLGFDAKRQVQV+G LVQ+PS
Sbjct: 12  AKEYPSAFIRVLGFDAKRQVQVAGFLVQRPS 42


>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +3

Query: 3   AKEYPEAFIRVLGFDAKRQVQVSGSLVQKPS 95
           AKEYP AFIRVLGFDAKRQVQV+G LV+KPS
Sbjct: 143 AKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|Q43108|Q43108_PTEVI Ribulose bisphosphate carboxylase small
          chain (Fragment) OS=Pteris vittata GN=rbcS1 PE=2 SV=1
          Length = 34

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 26/30 (86%), Positives = 28/30 (93%)
 Frame = +3

Query: 3  AKEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
          AKEYP AFIRVLGFDAKRQVQV+G LV+KP
Sbjct: 5  AKEYPNAFIRVLGFDAKRQVQVAGFLVKKP 34


>tr|A3F6J6|A3F6J6_CUCSA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Cucumis sativus GN=rbcS PE=2 SV=1
          Length = 93

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 21/35 (60%), Positives = 24/35 (68%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKPSV*TFL 110
           KEYP+AFIRV+GFD  RQVQ    +  KP V  FL
Sbjct: 55  KEYPDAFIRVIGFDNVRQVQCISFIAYKPQVLLFL 89


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           KEYP AFIRV+GFD+ RQVQ    +V KP
Sbjct: 149 KEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus
           musculus PE=2 SV=1
          Length = 180

 Score = 41.2 bits (95), Expect = 0.027
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKPS 95
           K YP+AF+R++GFD KRQVQ    +  KPS
Sbjct: 149 KAYPDAFVRIIGFDNKRQVQCISFIAYKPS 178


>tr|O20253|O20253_SPIOL Ribulose bisphosphate carboxylase small
           chain OS=Spinacia oleracea GN=rbcS PE=2 SV=1
          Length = 180

 Score = 41.2 bits (95), Expect = 0.027
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKPS 95
           KEYP AFIR++GFD+ RQVQ    +  KP+
Sbjct: 149 KEYPNAFIRIIGFDSNRQVQCVSFIAYKPA 178


>tr|Q8RVI7|Q8RVI7_PINPS Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Pinus pinaster PE=2 SV=1
          Length = 148

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +3

Query: 3   AKEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           AK YP+AFIRV+GFD  RQVQ    +V KP
Sbjct: 119 AKAYPKAFIRVIGFDNVRQVQCISFIVHKP 148


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +3

Query: 12  YPEAFIRVLGFDAKRQVQVSGSLVQKPS 95
           YP  ++RVLGFD+K+QVQ+ G LV +P+
Sbjct: 157 YPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small
           chain OS=Ammopiptanthus mongolicus PE=2 SV=1
          Length = 174

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +3

Query: 6   KEYPEAFIRVLGFDAKRQVQVSGSLVQKP 92
           KEYP AF+R++GFD KRQVQ    +  KP
Sbjct: 141 KEYPTAFVRIIGFDNKRQVQCISFIAYKP 169