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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946654
Clone id YMU02A01NGRL0013_E21
Library
Length 366
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_E21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTAAGGATGAACTGATCTTAGAAGGCAATGACATTGAGCTTGTTTCACGATCATGTGCCC
TGATCAACCAGAAATGCCATGTGAAGAAGAAAGATATTCGTAAATTTTTGGATGGTATTT
ATGTCAGTGAGAAGGGAACGATTTCTGAGGAGTGAGCAGCAGTTGCTGGTGTAGCAGGCG
AATCTAGGGGGACACTTCACCATGAGTCTAGTTATGAAGCCAATACTTGTCCTTTTTGTA
ACGGCACCAAGGGATTGCGTATTCAAAAAGCCTCTTCCTTGGTGTTTTTGTAGGGAGAAA
TGCTGTTTGAGTAGTAAGTTAAATACCTTGATTTTGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SZX9
Definition sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana
Align length 48
Score (bit) 94.4
E-value 2.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946654|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_E21, 5'
         (336 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis t...    94   2e-19
sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=R...    92   8e-19
sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis t...    90   3e-18
sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa sub...    89   5e-18
sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus ...    77   3e-14
sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=...    77   3e-14
sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicula...    77   3e-14
sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=...    77   3e-14
sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RP...    77   3e-14
sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus puncta...    77   4e-14
sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=...    74   2e-13
sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melan...    69   6e-12
sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosacchar...    69   1e-11
sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosacchar...    68   2e-11
sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis e...    67   4e-11
sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugi...    66   5e-11
sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium di...    62   7e-10
sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces...    62   7e-10
sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces...    62   9e-10
sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus bu...    51   2e-06
sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum perni...    44   2e-04
sp|P14135|RL6_HALMA 50S ribosomal protein L6P OS=Haloarcula mari...    41   0.002
sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta th...    41   0.002
sp|Q0W1X2|RL6_UNCMA 50S ribosomal protein L6P OS=Uncultured meth...    40   0.005
sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus...    39   0.006
sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abys...    39   0.008
sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hosp...    39   0.008
sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furi...    39   0.011
sp|Q12ZT5|RL6_METBU 50S ribosomal protein L6P OS=Methanococcoide...    38   0.018
sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus hori...    37   0.024

>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis
           thaliana GN=RPL9D PE=2 SV=1
          Length = 194

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 45/48 (93%), Positives = 47/48 (97%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTIS 146
           KDE+ILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKG I+
Sbjct: 144 KDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIA 191


>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9
           PE=2 SV=1
          Length = 193

 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 42/47 (89%), Positives = 46/47 (97%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDE++L+GNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKG +
Sbjct: 143 KDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAV 189


>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis
           thaliana GN=RPL9B PE=2 SV=3
          Length = 194

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 42/47 (89%), Positives = 45/47 (95%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDE++L+GNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK  I
Sbjct: 144 KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKI 190


>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp.
           japonica GN=RPL9 PE=2 SV=3
          Length = 190

 Score = 89.4 bits (220), Expect = 5e-18
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTIS 146
           KDEL+L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVS+KGTI+
Sbjct: 140 KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTIT 187


>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus
           GN=Rpl9 PE=1 SV=1
          Length = 192

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 39/47 (82%), Positives = 40/47 (85%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDELILEGNDIELVS S ALI Q   VK KDIRKFLDGIYVSEKGT+
Sbjct: 141 KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187


>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus
           GN=Rpl9 PE=2 SV=2
          Length = 192

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 39/47 (82%), Positives = 40/47 (85%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDELILEGNDIELVS S ALI Q   VK KDIRKFLDGIYVSEKGT+
Sbjct: 141 KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187


>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis
           GN=RPL9 PE=2 SV=1
          Length = 192

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 39/47 (82%), Positives = 40/47 (85%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDELILEGNDIELVS S ALI Q   VK KDIRKFLDGIYVSEKGT+
Sbjct: 141 KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187


>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens
           GN=RPL9 PE=1 SV=1
          Length = 192

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 39/47 (82%), Positives = 40/47 (85%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDELILEGNDIELVS S ALI Q   VK KDIRKFLDGIYVSEKGT+
Sbjct: 141 KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187


>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9
           PE=2 SV=1
          Length = 192

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 39/47 (82%), Positives = 40/47 (85%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDELILEGNDIELVS S ALI Q   VK KDIRKFLDGIYVSEKGT+
Sbjct: 141 KDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187


>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus
           GN=rpl9 PE=2 SV=1
          Length = 192

 Score = 76.6 bits (187), Expect = 4e-14
 Identities = 38/47 (80%), Positives = 40/47 (85%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDEL+LEGNDIELVS S ALI Q   VK KDIRKFLDGIYVSEKGT+
Sbjct: 141 KDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
tr_hit_id A9S9E8
Definition tr|A9S9E8|A9S9E8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 96.7
E-value 5.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946654|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_E21, 5'
         (336 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9E8|A9S9E8_PHYPA Predicted protein OS=Physcomitrella paten...    97   5e-19
tr|A9SHH6|A9SHH6_PHYPA Predicted protein OS=Physcomitrella paten...    96   1e-18
tr|A9TUQ5|A9TUQ5_PHYPA Predicted protein OS=Physcomitrella paten...    94   3e-18
tr|A9T4Q4|A9T4Q4_PHYPA Predicted protein OS=Physcomitrella paten...    94   3e-18
tr|B7FN14|B7FN14_MEDTR Putative uncharacterized protein OS=Medic...    92   1e-17
tr|A7QET6|A7QET6_VITVI Chromosome chr16 scaffold_86, whole genom...    91   2e-17
tr|A7P6L8|A7P6L8_VITVI Chromosome chr9 scaffold_7, whole genome ...    91   4e-17
tr|Q8LCC2|Q8LCC2_ARATH Ribosomal protein L9, putative OS=Arabido...    90   5e-17
tr|Q56W98|Q56W98_ARATH Ribosomal protein L9 (Fragment) OS=Arabid...    90   5e-17
tr|B3TLR1|B3TLR1_ELAGV Ribosomal L9-like protein OS=Elaeis guine...    90   5e-17
tr|A9PCN3|A9PCN3_POPTR Putative uncharacterized protein OS=Popul...    90   6e-17
tr|A9P941|A9P941_POPTR Putative uncharacterized protein OS=Popul...    90   6e-17
tr|Q6ZFJ5|Q6ZFJ5_ORYSJ Putative 60S ribosomal protein L9 OS=Oryz...    89   8e-17
tr|Q0J0R8|Q0J0R8_ORYSJ Os09g0485900 protein OS=Oryza sativa subs...    89   8e-17
tr|Q0E4R7|Q0E4R7_ORYSJ Os02g0103700 protein OS=Oryza sativa subs...    89   8e-17
tr|B8AGV9|B8AGV9_ORYSI Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|B6TH42|B6TH42_MAIZE 60S ribosomal protein L9 OS=Zea mays PE=2...    89   8e-17
tr|A9NZL8|A9NZL8_PICSI Putative uncharacterized protein OS=Picea...    89   8e-17
tr|A9NQ11|A9NQ11_PICSI Putative uncharacterized protein OS=Picea...    89   8e-17
tr|A3A267|A3A267_ORYSJ Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|A2Z2J3|A2Z2J3_ORYSI Putative uncharacterized protein OS=Oryza...    89   8e-17
tr|B6TSR0|B6TSR0_MAIZE 60S ribosomal protein L9 OS=Zea mays PE=2...    89   1e-16
tr|B6T7Z4|B6T7Z4_MAIZE 60S ribosomal protein L9 OS=Zea mays PE=2...    89   1e-16
tr|B6SQU6|B6SQU6_MAIZE 60S ribosomal protein L9 OS=Zea mays PE=2...    89   1e-16
tr|B6SI39|B6SI39_MAIZE 60S ribosomal protein L9 OS=Zea mays PE=2...    89   1e-16
tr|Q38M76|Q38M76_SOLTU Putative uncharacterized protein OS=Solan...    88   2e-16
tr|A9XPQ8|A9XPQ8_9MYRT Ribosomal protein L9 (Fragment) OS=Sonner...    88   2e-16
tr|A9XPP0|A9XPP0_9MYRT Ribosomal protein L9 (Fragment) OS=Sonner...    88   2e-16
tr|A9XPK6|A9XPK6_9MYRT Ribosomal protein L9 (Fragment) OS=Sonner...    88   2e-16
tr|A9XPJ4|A9XPJ4_9MYRT Ribosomal protein L9 (Fragment) OS=Sonner...    88   2e-16

>tr|A9S9E8|A9S9E8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_182540 PE=4 SV=1
          Length = 189

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 46/47 (97%), Positives = 47/47 (100%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDEL+LEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI
Sbjct: 140 KDELVLEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 186


>tr|A9SHH6|A9SHH6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185033 PE=4 SV=1
          Length = 189

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 45/47 (95%), Positives = 47/47 (100%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDEL+LEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVS+KGTI
Sbjct: 140 KDELVLEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSDKGTI 186


>tr|A9TUQ5|A9TUQ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_108826 PE=4 SV=1
          Length = 189

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 43/47 (91%), Positives = 47/47 (100%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDEL+LEGNDIELVSRSCALINQKCHVKKKDIRKFLDG+YVS+KGT+
Sbjct: 140 KDELVLEGNDIELVSRSCALINQKCHVKKKDIRKFLDGVYVSDKGTM 186


>tr|A9T4Q4|A9T4Q4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191598 PE=4 SV=1
          Length = 189

 Score = 94.0 bits (232), Expect = 3e-18
 Identities = 43/47 (91%), Positives = 47/47 (100%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDEL+LEGNDIELVSRSCALINQKCHVKKKDIRKFLDG+YVS+KGT+
Sbjct: 140 KDELVLEGNDIELVSRSCALINQKCHVKKKDIRKFLDGVYVSDKGTM 186


>tr|B7FN14|B7FN14_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 193

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 42/47 (89%), Positives = 47/47 (100%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDE++L+GNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKG++
Sbjct: 143 KDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGSV 189


>tr|A7QET6|A7QET6_VITVI Chromosome chr16 scaffold_86, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037149001
           PE=4 SV=1
          Length = 193

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 43/48 (89%), Positives = 47/48 (97%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTIS 146
           KDEL+L+GNDIELVSRS ALINQKCHVKKKDIRKFLDGIYVSEKGT++
Sbjct: 143 KDELVLDGNDIELVSRSAALINQKCHVKKKDIRKFLDGIYVSEKGTMA 190


>tr|A7P6L8|A7P6L8_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034120001
           PE=4 SV=1
          Length = 193

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/48 (89%), Positives = 46/48 (95%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTIS 146
           KDEL+L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKGTI+
Sbjct: 143 KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIA 190


>tr|Q8LCC2|Q8LCC2_ARATH Ribosomal protein L9, putative
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 194

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 42/47 (89%), Positives = 45/47 (95%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDE++L+GNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK  I
Sbjct: 144 KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKI 190


>tr|Q56W98|Q56W98_ARATH Ribosomal protein L9 (Fragment)
           OS=Arabidopsis thaliana GN=At1g33140 PE=2 SV=1
          Length = 98

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 42/47 (89%), Positives = 45/47 (95%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDE++L+GNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEK  I
Sbjct: 48  KDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKI 94


>tr|B3TLR1|B3TLR1_ELAGV Ribosomal L9-like protein OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 189

 Score = 90.1 bits (222), Expect = 5e-17
 Identities = 43/47 (91%), Positives = 45/47 (95%)
 Frame = +3

Query: 3   KDELILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGTI 143
           KDEL+L+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKGTI
Sbjct: 140 KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 186