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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946655
Clone id YMU02A01NGRL0013_E22
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_E22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAACCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAATTAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAATAAA
TAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946655|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_E22, 5'
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q9TY98
Definition tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c OS=Plasmodium falciparum (isolate 3D7)
Align length 101
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946655|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_E22, 5'
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c...    36   1.1  
tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley...    33   5.5  

>tr|Q9TY98|Q9TY98_PLAF7 Putative uncharacterized protein PFB0190c
           OS=Plasmodium falciparum (isolate 3D7) GN=PFB0190c PE=4
           SV=1
          Length = 2295

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
 Frame = -2

Query: 396 MFNNLDKPGFNYSNFLSQIYSLRFSDDESAILDVYP*IFFFIYLPGSRN*TKYFLGYQNN 217
           +  ++++  +NY N L + YSL+   ++    ++Y  + + I L  ++N  KYF+ + NN
Sbjct: 179 ILKSINRNNYNYFNMLDE-YSLQTKLNK----EMYDSLNYLIRLMNNKNSRKYFISFSNN 233

Query: 216 XXXXXXXXXLEMNE---*RDWLIYL*FWRNNKKTHIFCEDK 103
                     +MNE    R +++ L  W NN K    C DK
Sbjct: 234 --EKKKIIKNDMNENIYIRHFIVSLFRWYNNFKLIETCFDK 272


>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
           GN=rpl16 PE=3 SV=1
          Length = 138

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 268 INKEKNLWVDV*DS*LIVTKPQRINLGKKVGIIK--SGFVKIIEHLF 402
           + K+  +W+++  S +I  KPQ + +GK  G +K  + F+K  E LF
Sbjct: 59  LKKQAKIWINIFPSKMITKKPQEVRMGKGKGYVKYWAYFIKKNEILF 105