BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946658|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F02, 5'
         (260 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20420|ACHA5_RAT Neuronal acetylcholine receptor subunit alph...    29   8.2  

>sp|P20420|ACHA5_RAT Neuronal acetylcholine receptor subunit alpha-5
           OS=Rattus norvegicus GN=Chrna5 PE=2 SV=1
          Length = 452

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -3

Query: 195 PYITSP---KSLCLDLNYIHILPFLGCAFLTAICLRIETQWSSKLSMLFLCTS*SLTCTP 25
           PYIT     K L L      I+P +G +FLT +   + +    K+S   LCTS  ++ T 
Sbjct: 223 PYITYSFVIKRLPLFYTLFLIIPCIGLSFLTVVVFYLPSNEGEKIS---LCTSVLVSLTV 279

Query: 24  F 22
           F
Sbjct: 280 F 280

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946658|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F02, 5'
         (260 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******