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DK946662
Clone id YMU02A01NGRL0013_F06
Library
Length 266
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_F06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAAAGAGCTGGGTAGTAAGAACCCTTTGAACAATGCACGGGCAGTCGTGGAGGCAGTT
ACCAGTATGAAAACTTTCAAGGAAGTTTCTGAGAAGAGAGGGATTCCGATGGAGGTTCTA
TGGCAGTAAATACTATTATTGAGTTTGCCTCATTAAGATGACAGATGACTGTATTTGTAT
ACCACTCAATTTTGGAAGACCTTATGTATCTTCGGACAAAAAAAAACAAAAAAAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P93014
Definition sp|P93014|RR5_ARATH 30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana
Align length 42
Score (bit) 57.8
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946662|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F06, 5'
         (217 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93014|RR5_ARATH 30S ribosomal protein S5, chloroplastic OS=A...    58   2e-08
sp|Q9ST69|RR5_SPIOL 30S ribosomal protein S5, chloroplastic OS=S...    56   5e-08
sp|P59126|RS5_THEEB 30S ribosomal protein S5 OS=Thermosynechococ...    55   1e-07
sp|O24705|RS5_SYNP6 30S ribosomal protein S5 OS=Synechococcus sp...    55   1e-07
sp|Q31L23|RS5_SYNE7 30S ribosomal protein S5 OS=Synechococcus el...    55   1e-07
sp|P73304|RS5_SYNY3 30S ribosomal protein S5 OS=Synechocystis sp...    52   7e-07
sp|Q7NEG9|RS5_GLOVI 30S ribosomal protein S5 OS=Gloeobacter viol...    51   2e-06
sp|Q3MFA5|RS5_ANAVT 30S ribosomal protein S5 OS=Anabaena variabi...    51   2e-06
sp|Q8YPJ5|RS5_ANASP 30S ribosomal protein S5 OS=Anabaena sp. (st...    51   2e-06
sp|Q1XDJ0|RR5_PORYE 30S ribosomal protein S5, chloroplastic OS=P...    50   3e-06
sp|P51298|RR5_PORPU 30S ribosomal protein S5, chloroplastic OS=P...    50   5e-06
sp|Q3AW77|RS5_SYNS9 30S ribosomal protein S5 OS=Synechococcus sp...    48   1e-05
sp|A2BTC1|RS5_PROMS 30S ribosomal protein S5 OS=Prochlorococcus ...    48   2e-05
sp|Q7V529|RS5_PROMM 30S ribosomal protein S5 OS=Prochlorococcus ...    48   2e-05
sp|A2CC44|RS5_PROM3 30S ribosomal protein S5 OS=Prochlorococcus ...    48   2e-05
sp|A5GIS9|RS5_SYNPW 30S ribosomal protein S5 OS=Synechococcus sp...    47   2e-05
sp|A6MW17|RR5_RHDSA 30S ribosomal protein S5, chloroplastic OS=R...    47   3e-05
sp|A3PF31|RS5_PROM0 30S ribosomal protein S5 OS=Prochlorococcus ...    47   4e-05
sp|Q7UZW0|RS5_PROMP 30S ribosomal protein S5 OS=Prochlorococcus ...    46   5e-05
sp|Q318K0|RS5_PROM9 30S ribosomal protein S5 OS=Prochlorococcus ...    46   5e-05
sp|A2BYS0|RS5_PROM5 30S ribosomal protein S5 OS=Prochlorococcus ...    46   5e-05
sp|A8G745|RS5_PROM2 30S ribosomal protein S5 OS=Prochlorococcus ...    46   5e-05
sp|Q3AMP6|RS5_SYNSC 30S ribosomal protein S5 OS=Synechococcus sp...    46   7e-05
sp|Q7U4I4|RS5_SYNPX 30S ribosomal protein S5 OS=Synechococcus sp...    46   7e-05
sp|P23402|RR5_CYAPA 30S ribosomal protein S5, cyanelle OS=Cyanop...    45   1e-04
sp|Q46IS5|RS5_PROMT 30S ribosomal protein S5 OS=Prochlorococcus ...    44   2e-04
sp|A2C4Y3|RS5_PROM1 30S ribosomal protein S5 OS=Prochlorococcus ...    44   2e-04
sp|Q7V9X8|RS5_PROMA 30S ribosomal protein S5 OS=Prochlorococcus ...    44   3e-04
sp|A5GVX6|RS5_SYNR3 30S ribosomal protein S5 OS=Synechococcus sp...    43   4e-04
sp|Q47LL0|RS5_THEFY 30S ribosomal protein S5 OS=Thermobifida fus...    40   0.004

>sp|P93014|RR5_ARATH 30S ribosomal protein S5, chloroplastic
           OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1
          Length = 303

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+LGS N LNNARA + AV  M+ F++V+++RGIPME LW+
Sbjct: 262 GKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPMEELWK 303


>sp|Q9ST69|RR5_SPIOL 30S ribosomal protein S5, chloroplastic
           OS=Spinacia oleracea GN=rps5 PE=1 SV=1
          Length = 308

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 25/42 (59%), Positives = 32/42 (76%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+LGS N LNNARA + AV +M+ F +V+  RGIPME LW+
Sbjct: 267 GKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEELWK 308


>sp|P59126|RS5_THEEB 30S ribosomal protein S5 OS=Thermosynechococcus
           elongatus (strain BP-1) GN=rpsE PE=3 SV=1
          Length = 174

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 24/40 (60%), Positives = 35/40 (87%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K+LGS NPLNNARA +EA+ +++TF+EV+E+R IP+E L+
Sbjct: 133 KQLGSSNPLNNARAALEALAALRTFQEVAEEREIPIENLY 172


>sp|O24705|RS5_SYNP6 30S ribosomal protein S5 OS=Synechococcus sp.
           (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsE
           PE=3 SV=1
          Length = 180

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 24/40 (60%), Positives = 35/40 (87%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K LGSK+PLNNARA +EA++S++TF+EV++ R IP+E L+
Sbjct: 141 KRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQLY 180


>sp|Q31L23|RS5_SYNE7 30S ribosomal protein S5 OS=Synechococcus
           elongatus (strain PCC 7942) GN=rpsE PE=3 SV=1
          Length = 180

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 24/40 (60%), Positives = 35/40 (87%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K LGSK+PLNNARA +EA++S++TF+EV++ R IP+E L+
Sbjct: 141 KRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQLY 180


>sp|P73304|RS5_SYNY3 30S ribosomal protein S5 OS=Synechocystis sp.
           (strain PCC 6803) GN=rpsE PE=3 SV=1
          Length = 173

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 22/40 (55%), Positives = 33/40 (82%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K+LGS NPLNNARA + A+ +++TF EV+E+RG+ +E L+
Sbjct: 133 KQLGSNNPLNNARAAINALETLRTFSEVAEERGVSVEHLY 172


>sp|Q7NEG9|RS5_GLOVI 30S ribosomal protein S5 OS=Gloeobacter
           violaceus GN=rpsE PE=3 SV=1
          Length = 223

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K LGSK+PLNNARA  +A++ ++T  EV+ +RG+P+  LW
Sbjct: 182 KSLGSKSPLNNARAAADALSRLRTLSEVAGERGVPVSNLW 221


>sp|Q3MFA5|RS5_ANAVT 30S ribosomal protein S5 OS=Anabaena variabilis
           (strain ATCC 29413 / PCC 7937) GN=rpsE PE=3 SV=1
          Length = 174

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K+LGS NPLNNARA V A+++++T  EV+E RGI +E L+
Sbjct: 134 KQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGIAIEKLY 173


>sp|Q8YPJ5|RS5_ANASP 30S ribosomal protein S5 OS=Anabaena sp.
           (strain PCC 7120) GN=rpsE PE=3 SV=1
          Length = 174

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 23/40 (57%), Positives = 32/40 (80%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K+LGS NPLNNARA V A+++++T  EV+E RGI +E L+
Sbjct: 134 KQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGIAIEKLY 173


>sp|Q1XDJ0|RR5_PORYE 30S ribosomal protein S5, chloroplastic
           OS=Porphyra yezoensis GN=rps5 PE=3 SV=1
          Length = 174

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +1

Query: 4   KELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLW 123
           K+LGS N LNNARAV+  +T ++TF E ++ RG+P+E L+
Sbjct: 133 KQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIESLY 172
tr_hit_id A9RC86
Definition tr|A9RC86|A9RC86_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 68.2
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946662|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F06, 5'
         (217 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RC86|A9RC86_PHYPA Predicted protein OS=Physcomitrella paten...    68   2e-10
tr|A9NV88|A9NV88_PICSI Putative uncharacterized protein OS=Picea...    66   1e-09
tr|B6TT32|B6TT32_MAIZE 30S ribosomal protein S5 OS=Zea mays PE=2...    63   8e-09
tr|Q850W6|Q850W6_ORYSJ Os03g0452300 protein OS=Oryza sativa subs...    59   2e-07
tr|Q84SS7|Q84SS7_ORYSJ Putative ribosomal protein S5 OS=Oryza sa...    59   2e-07
tr|Q10IJ6|Q10IJ6_ORYSJ Ribosomal protein S5 containing protein, ...    59   2e-07
tr|A3AJI3|A3AJI3_ORYSJ Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|A2XIG6|A2XIG6_ORYSI Putative uncharacterized protein OS=Oryza...    59   2e-07
tr|Q56ZQ4|Q56ZQ4_ARATH 30S ribosomal protein S5 OS=Arabidopsis t...    58   3e-07
tr|A9PH95|A9PH95_POPTR Putative uncharacterized protein OS=Popul...    57   5e-07
tr|B1WQS7|B1WQS7_CYAA5 30S ribosomal protein S5 OS=Cyanothece (s...    56   1e-06
tr|Q4C155|Q4C155_CROWT Ribosomal protein S5, bacterial and organ...    56   1e-06
tr|B7K232|B7K232_SYNP8 Ribosomal protein S5 OS=Synechococcus sp....    56   1e-06
tr|B4BXS1|B4BXS1_9CHRO Ribosomal protein S5 OS=Cyanothece sp. PC...    56   1e-06
tr|A3IQ20|A3IQ20_9CHRO 30S ribosomal protein S5 OS=Cyanothece sp...    56   1e-06
tr|A7QPU4|A7QPU4_VITVI Chromosome chr10 scaffold_138, whole geno...    55   2e-06
tr|A0ZG59|A0ZG59_NODSP 30S ribosomal protein S5 OS=Nodularia spu...    54   3e-06
tr|B4VPM2|B4VPM2_9CYAN Ribosomal protein S5 OS=Microcoleus chtho...    54   5e-06
tr|A0YJS7|A0YJS7_9CYAN 30S ribosomal protein S5 OS=Lyngbya sp. P...    54   5e-06
tr|B2ITN9|B2ITN9_NOSP7 Ribosomal protein S5 OS=Nostoc punctiform...    53   9e-06
tr|B8HMS0|B8HMS0_9CHRO Ribosomal protein S5 OS=Cyanothece sp. PC...    52   1e-05
tr|B4WHG1|B4WHG1_9SYNE Ribosomal protein S5 OS=Synechococcus sp....    52   1e-05
tr|B5W6R5|B5W6R5_SPIMA Ribosomal protein S5 OS=Arthrospira maxim...    52   2e-05
tr|B0C1E9|B0C1E9_ACAM1 30S ribosomal protein S5 OS=Acaryochloris...    51   3e-05
tr|B7KI03|B7KI03_9CHRO Ribosomal protein S5 OS=Cyanothece sp. PC...    50   4e-05
tr|Q2JV93|Q2JV93_SYNJA Ribosomal protein S5 OS=Synechococcus sp....    50   6e-05
tr|B0JHY7|B0JHY7_MICAN 30S ribosomal protein S5 OS=Microcystis a...    50   6e-05
tr|A8YFY4|A8YFY4_MICAE RpsE protein OS=Microcystis aeruginosa PC...    50   6e-05
tr|A4S775|A4S775_OSTLU Plastid ribosomal protein S5A small ribos...    50   6e-05
tr|B4B3P0|B4B3P0_9CHRO Ribosomal protein S5 OS=Cyanothece sp. PC...    50   7e-05

>tr|A9RC86|A9RC86_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111761 PE=4 SV=1
          Length = 72

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GKELGSKNPLNNARAVVEAV  MK F++V+  RGIPME LW+
Sbjct: 31  GKELGSKNPLNNARAVVEAVGKMKQFRDVARDRGIPMEELWK 72


>tr|A9NV88|A9NV88_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 328

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 37/42 (88%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+LGS NPLNNARAV++AV+ M+ F+EV+E RGIPME LW+
Sbjct: 287 GKQLGSDNPLNNARAVIDAVSQMRQFREVAEYRGIPMEELWK 328


>tr|B6TT32|B6TT32_MAIZE 30S ribosomal protein S5 OS=Zea mays PE=2
           SV=1
          Length = 318

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKNPLNNARA ++A   MK FK+V+E+RGIPME LW+
Sbjct: 277 GKQLRSKNPLNNARATIKATQMMKQFKDVAEERGIPMEELWK 318


>tr|Q850W6|Q850W6_ORYSJ Os03g0452300 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0037J17.7 PE=2 SV=1
          Length = 326

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKNPLNNARA ++A   M+ FK+V+ +RG+PME LW+
Sbjct: 285 GKQLRSKNPLNNARATIKATQMMRQFKDVAAERGLPMEQLWK 326


>tr|Q84SS7|Q84SS7_ORYSJ Putative ribosomal protein S5 OS=Oryza
           sativa subsp. japonica GN=OSJNBb0047D08.4 PE=3 SV=1
          Length = 327

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKNPLNNARA ++A   M+ FK+V+ +RG+PME LW+
Sbjct: 286 GKQLRSKNPLNNARATIKATQMMRQFKDVAAERGLPMEQLWK 327


>tr|Q10IJ6|Q10IJ6_ORYSJ Ribosomal protein S5 containing protein,
           expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g34040 PE=4 SV=1
          Length = 287

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKNPLNNARA ++A   M+ FK+V+ +RG+PME LW+
Sbjct: 246 GKQLRSKNPLNNARATIKATQMMRQFKDVAAERGLPMEQLWK 287


>tr|A3AJI3|A3AJI3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010955 PE=4 SV=1
          Length = 75

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKNPLNNARA ++A   M+ FK+V+ +RG+PME LW+
Sbjct: 34  GKQLRSKNPLNNARATIKATQMMRQFKDVAAERGLPMEQLWK 75


>tr|A2XIG6|A2XIG6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12226 PE=3 SV=1
          Length = 316

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKNPLNNARA ++A   M+ FK+V+ +RG+PME LW+
Sbjct: 275 GKQLRSKNPLNNARATIKATQMMRQFKDVAAERGLPMEQLWK 316


>tr|Q56ZQ4|Q56ZQ4_ARATH 30S ribosomal protein S5 OS=Arabidopsis
           thaliana GN=At2g33800 PE=4 SV=1
          Length = 50

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 25/42 (59%), Positives = 34/42 (80%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+LGS N LNNARA + AV  M+ F++V+++RGIPME LW+
Sbjct: 9   GKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPMEELWK 50


>tr|A9PH95|A9PH95_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 311

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 27/42 (64%), Positives = 32/42 (76%)
 Frame = +1

Query: 1   GKELGSKNPLNNARAVVEAVTSMKTFKEVSEKRGIPMEVLWQ 126
           GK+L SKN LNNARA V AV  M+ F EV+ +RGIPME LW+
Sbjct: 270 GKQLRSKNALNNARATVVAVQKMRQFSEVARERGIPMEELWK 311