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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946669
Clone id YMU02A01NGRL0013_F13
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_F13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TATGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ACAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAGT
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 30.4
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946669|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F13, 5'
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    30   4.0  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
 Frame = +1

Query: 247 LISTSGEINKEKNLWVDVYDS*LIVTKPQRI--------NLGKKVGTNKSGFVKIIE 393
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K G N SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946669|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F13, 5'
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   1.8  
tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein OS=Cellv...    34   3.2  
tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley...    33   5.5  
tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacter...    33   9.4  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein
           OS=Cellvibrio japonicus (strain Ueda107) GN=CJA_1484
           PE=4 SV=1
          Length = 409

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 341 IWERKLEQINPGLSRLLNIYLVERDPSFQQLGEIYFPKGFFL 466
           +W R++ Q + GL   +  Y V  DP++Q LG I   KG  L
Sbjct: 95  LWSRRINQQHTGLWGWIKSYFVAEDPNYQILGGIGAEKGLLL 136


>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
           GN=rpl16 PE=3 SV=1
          Length = 138

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +1

Query: 268 INKEKNLWVDVYDS*LIVTKPQRINLGKKVGTNK--SGFVKIIEHLF 402
           + K+  +W++++ S +I  KPQ + +GK  G  K  + F+K  E LF
Sbjct: 59  LKKQAKIWINIFPSKMITKKPQEVRMGKGKGYVKYWAYFIKKNEILF 105


>tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacterium
           johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
           GN=Fjoh_2505 PE=4 SV=1
          Length = 263

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = +2

Query: 299 SMIADSSSLNLRE*IWERKLEQINPGLSRLLN---IYLVERDPSFQQLGEIY 445
           +++A     NL E IW+R +E++ PG+   LN    Y++E DP+   + E+Y
Sbjct: 60  AVLACKKPENLCESIWDRFVEKL-PGVLEKLNEDAAYILENDPASNSIDEVY 110