DK946669
Clone id YMU02A01NGRL0013_F13
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_F13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TATGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ACAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAGT
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 30.4
E-value 4.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946669|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F13, 5'
(466 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 30 4.0

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 30.4 bits (67), Expect = 4.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Frame = +1

Query: 247 LISTSGEINKEKNLWVDVYDS*LIVTKPQRI--------NLGKKVGTNKSGFVKIIE 393
L+ T+ +++KE+N+W+++ D + RI ++ K G N SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946669|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F13, 5'
(466 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.8
tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein OS=Cellv... 34 3.2
tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxley... 33 5.5
tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacter... 33 9.4

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 35.0 bits (79), Expect = 1.8
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
LK +++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|B3PDM4|B3PDM4_CELJU PQQ enzyme repeat domain protein
OS=Cellvibrio japonicus (strain Ueda107) GN=CJA_1484
PE=4 SV=1
Length = 409

Score = 34.3 bits (77), Expect = 3.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2

Query: 341 IWERKLEQINPGLSRLLNIYLVERDPSFQQLGEIYFPKGFFL 466
+W R++ Q + GL + Y V DP++Q LG I KG L
Sbjct: 95 LWSRRINQQHTGLWGWIKSYFVAEDPNYQILGGIGAEKGLLL 136


>tr|Q6VEE3|Q6VEE3_EMIHU Ribosomal protein L16 OS=Emiliania huxleyi
GN=rpl16 PE=3 SV=1
Length = 138

Score = 33.5 bits (75), Expect = 5.5
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +1

Query: 268 INKEKNLWVDVYDS*LIVTKPQRINLGKKVGTNK--SGFVKIIEHLF 402
+ K+ +W++++ S +I KPQ + +GK G K + F+K E LF
Sbjct: 59 LKKQAKIWINIFPSKMITKKPQEVRMGKGKGYVKYWAYFIKKNEILF 105


>tr|A5FGY4|A5FGY4_FLAJ1 Serine O-acetyltransferase OS=Flavobacterium
johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
GN=Fjoh_2505 PE=4 SV=1
Length = 263

Score = 32.7 bits (73), Expect = 9.4
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2

Query: 299 SMIADSSSLNLRE*IWERKLEQINPGLSRLLN---IYLVERDPSFQQLGEIY 445
+++A NL E IW+R +E++ PG+ LN Y++E DP+ + E+Y
Sbjct: 60 AVLACKKPENLCESIWDRFVEKL-PGVLEKLNEDAAYILENDPASNSIDEVY 110