DK946678
Clone id YMU02A01NGRL0013_F23
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_F23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATC
ATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATAC
TTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCT
AAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAA
TAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCG
TTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946678|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F23, 5'
(465 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.1

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +3

Query: 246 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 392
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.1
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3

Query: 216 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 380
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 49
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946678|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_F23, 5'
(465 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 33 5.4
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.1

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 33.5 bits (75), Expect = 5.4
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = -2

Query: 185 EMMSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
+ +++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 235 KQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +3

Query: 237 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 401
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796