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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946700
Clone id YMU02A01NGRL0013_H03
Library
Length 202
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_H03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAGGGTAACTATTGCTTTGGAATGTACAAGTTGTATTCAGAGAAAAACCAGTGGAAAAT
CCGCGGGTCTTTGCCGATACACTACACGTAAAAATCGTCGTAACACACCCGCTCGGCTGG
AGTTAGAGAAGTATTGCTTCCATTGTCACAAGCATACCTTGCACAAAGAGTCGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q85FK1
Definition sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS=Adiantum capillus-veneris
Align length 52
Score (bit) 116.0
E-value 3.0e-26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946700|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_H03, 5'
         (157 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS...   116   3e-26
sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic OS...    79   7e-15
sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic OS...    75   8e-14
sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic OS...    74   2e-13
sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic OS...    74   3e-13
sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic OS...    74   3e-13
sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic OS...    74   3e-13
sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic OS...    73   5e-13
sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic OS...    73   5e-13
sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic OS...    73   5e-13
sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic OS...    73   5e-13
sp|Q09MF7|RK33_CITSI 50S ribosomal protein L33, chloroplastic OS...    73   5e-13
sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|A4QLV4|RK33_NASOF 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|B1NWH1|RK33_MANES 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|P56796|RK33_ARATH 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic OS...    72   7e-13
sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic OS...    72   9e-13
sp|A4QLL5|RK33_LOBMA 50S ribosomal protein L33, chloroplastic OS...    72   9e-13
sp|Q06GX6|RK33_DRIGR 50S ribosomal protein L33, chloroplastic OS...    72   9e-13
sp|A6MM57|RK33_BUXMI 50S ribosomal protein L33, chloroplastic OS...    72   9e-13
sp|Q0ZIZ9|RK33_VITVI 50S ribosomal protein L33, chloroplastic OS...    72   1e-12
sp|Q32RT8|RK33_STAPU 50S ribosomal protein L33, chloroplastic OS...    72   1e-12
sp|P41612|RK33_PINTH 50S ribosomal protein L33, chloroplastic OS...    72   1e-12
sp|Q7GUD1|RK33_PINKO 50S ribosomal protein L33, chloroplastic OS...    72   1e-12
sp|Q6YXM3|RK33_PHYPA 50S ribosomal protein L33, chloroplastic OS...    72   1e-12
sp|A4QJD6|RK33_AETCO 50S ribosomal protein L33, chloroplastic OS...    71   1e-12
sp|P48958|RL33_SYNY3 50S ribosomal protein L33 OS=Synechocystis ...    71   2e-12

>sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl33 PE=2 SV=2
          Length = 66

 Score =  116 bits (291), Expect = 3e-26
 Identities = 52/52 (100%), Positives = 52/52 (100%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKES 157
           LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKES
Sbjct: 13  LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKES 64


>sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic
           OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 34/51 (66%), Positives = 41/51 (80%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC Q   + KS G+ RYTTRKNRRNTP RLEL+K+C +C+KHT+H E
Sbjct: 13  LECTSCTQDSVNKKSPGISRYTTRKNRRNTPLRLELKKFCPYCYKHTIHGE 63


>sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic
           OS=Fagopyrum esculentum subsp. ancestrale GN=rpl33 PE=3
           SV=1
          Length = 66

 Score = 75.5 bits (184), Expect = 8e-14
 Identities = 30/51 (58%), Positives = 42/51 (82%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC+++  + +S G+ RY T+KNRRNTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRKNVNKESRGISRYITQKNRRNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic
           OS=Lepidium virginicum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCAYCYKHTIHGE 63


>sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic
           OS=Draba nemorosa GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic
           OS=Crucihimalaya wallichii GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic
           OS=Capsella bursa-pastoris GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic
           OS=Populus trichocarpa GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 29/51 (56%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC+++  + KS G+ RY T+KNR N P+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGE 63


>sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic
           OS=Populus alba GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 29/51 (56%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC+++  + KS G+ RY T+KNR N P+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGE 63


>sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic
           OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 72.8 bits (177), Expect = 5e-13
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++   + +S G+ RY T+KNR NTP+RLEL+K+C +C+KHT+H E
Sbjct: 13  LECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGE 63
tr_hit_id B7ZIQ6
Definition tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria davidiana
Align length 51
Score (bit) 75.5
E-value 1.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946700|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_H03, 5'
         (157 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria david...    75   1e-12
tr|Q4FG88|Q4FG88_TYPLA 50S ribosomal protein L33 (Fragment) OS=T...    75   2e-12
tr|B7UCF6|B7UCF6_9POAL Rpl33 OS=Typha domingensis PE=4 SV=1            75   2e-12
tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment) OS=Y...    73   6e-12
tr|B8HWY6|B8HWY6_9CHRO Ribosomal protein L33 OS=Cyanothece sp. P...    72   1e-11
tr|B3IWG9|B3IWG9_TAKLE Ribosomal protein L33 OS=Takakia lepidozi...    72   1e-11
tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus banca...    72   1e-11
tr|B7KBE3|B7KBE3_9CHRO Ribosomal protein L33 OS=Cyanothece sp. P...    72   2e-11
tr|Q4FG89|Q4FG89_RANMC 50S ribosomal protein L33 (Fragment) OS=R...    72   2e-11
tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinife...    72   2e-11
tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment) OS=G...    71   2e-11
tr|A9QBB4|A9QBB4_ELAOL 50S ribosomal protein L33 (Fragment) OS=E...    71   2e-11
tr|Q4FG92|Q4FG92_ACOAM 50S ribosomal protein L33 (Fragment) OS=A...    71   3e-11
tr|A9QC76|A9QC76_TRACE 50S ribosomal protein L33 (Fragment) OS=T...    71   3e-11
tr|B0LP34|B0LP34_9CARY 50S ribosomal protein L33 OS=Silene aegyp...    70   4e-11
tr|A9QBK7|A9QBK7_MUSAC 50S ribosomal protein L33 (Fragment) OS=M...    70   4e-11
tr|B2J0D4|B2J0D4_NOSP7 Ribosomal protein L33 OS=Nostoc punctifor...    70   5e-11
tr|A0YR61|A0YR61_9CYAN 50S ribosomal protein L33 OS=Lyngbya sp. ...    70   7e-11
tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium subter...    69   9e-11
tr|B4Y1W1|B4Y1W1_AGRGI Ribosomal protein L33 OS=Agrostemma githa...    69   9e-11
tr|B6RRU3|B6RRU3_9CARY Ribosomal protein L33 OS=Eudianthe laeta ...    69   1e-10
tr|B0LNQ8|B0LNQ8_SILLA 50S ribosomal protein L33 OS=Silene latif...    69   1e-10
tr|A9QBT0|A9QBT0_PASBI 50S ribosomal protein L33 (Fragment) OS=P...    69   1e-10
tr|Q4FG90|Q4FG90_NUPAD 50S ribosomal protein L33 (Fragment) OS=N...    69   2e-10
tr|B4Y1V9|B4Y1V9_9CARY Ribosomal protein L33 OS=Atocion rupestre...    69   2e-10
tr|B4Y1V7|B4Y1V7_9CARY Ribosomal protein L33 OS=Lychnis flos-cuc...    69   2e-10
tr|B4Y1V5|B4Y1V5_9CARY Ribosomal protein L33 OS=Lychnis flos-jov...    69   2e-10
tr|B4Y1V3|B4Y1V3_9CARY Ribosomal protein L33 OS=Petrocoptis pyre...    69   2e-10
tr|B0LP55|B0LP55_9CARY 50S ribosomal protein L33 OS=Silene atoci...    69   2e-10
tr|B0LP13|B0LP13_9CARY 50S ribosomal protein L33 OS=Silene schaf...    69   2e-10

>tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria
           davidiana GN=rpl33 PE=4 SV=1
          Length = 68

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 33/51 (64%), Positives = 39/51 (76%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC Q     K  G+ RYTTRKNRRNTP RLEL+K+C +C+KHT+H E
Sbjct: 13  LECTSCTQDSVYKKFPGISRYTTRKNRRNTPIRLELKKFCPYCYKHTIHGE 63


>tr|Q4FG88|Q4FG88_TYPLA 50S ribosomal protein L33 (Fragment)
           OS=Typha latifolia GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++   + +S G+ RY T+KNR NTP+RLEL K+C +CHKHT+H E
Sbjct: 13  LECTSCVRNGVNKESPGISRYITQKNRHNTPSRLELRKFCRYCHKHTIHGE 63


>tr|B7UCF6|B7UCF6_9POAL Rpl33 OS=Typha domingensis PE=4 SV=1
          Length = 66

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++   + +S G+ RY T+KNR NTP+RLEL K+C +CHKHT+H E
Sbjct: 13  LECTSCVRNGVNKESPGISRYITQKNRHNTPSRLELRKFCRYCHKHTIHGE 63


>tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment)
           OS=Yucca schidigera GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 30/51 (58%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSCIQ   + +S G+ RY T+KNR NTP+RL+L K+C +CHKHT++ E
Sbjct: 13  LECTSCIQNGVNKESPGISRYITQKNRHNTPSRLDLRKFCRYCHKHTIYGE 63


>tr|B8HWY6|B8HWY6_9CHRO Ribosomal protein L33 OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_0903 PE=4 SV=1
          Length = 62

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 33/51 (64%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECT C +   + +SAG+ RYTT KNRRNT ARLEL K+C HC+KHT+HKE
Sbjct: 11  LECTEC-RSNPAKRSAGVSRYTTTKNRRNTTARLELNKFCPHCNKHTVHKE 60


>tr|B3IWG9|B3IWG9_TAKLE Ribosomal protein L33 OS=Takakia
           lepidozioides GN=rpl33 PE=4 SV=1
          Length = 65

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 33/51 (64%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC Q     K  G+ RYTT+KNRRNTP RLEL+K+C +C+KHT+HKE
Sbjct: 13  LECTSCAQNGEKIK-LGVSRYTTKKNRRNTPTRLELKKFCPYCNKHTIHKE 62


>tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus bancanus
           GN=rpl33 PE=4 SV=1
          Length = 66

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 29/51 (56%), Positives = 40/51 (78%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++   + +S G+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECTSCVRNGINKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>tr|B7KBE3|B7KBE3_9CHRO Ribosomal protein L33 OS=Cyanothece sp. PCC
           7424 GN=PCC7424_3097 PE=4 SV=1
          Length = 64

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 32/51 (62%), Positives = 39/51 (76%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECT C +     +SAG+ RYTT KNRRNT  RLEL+K+C HC+KHT+HKE
Sbjct: 13  LECTEC-RSNPDKRSAGVSRYTTSKNRRNTTGRLELKKFCTHCNKHTVHKE 62


>tr|Q4FG89|Q4FG89_RANMC 50S ribosomal protein L33 (Fragment)
           OS=Ranunculus macranthus GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LEC SC++   + KS G+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 13  LECNSCVRNDINKKSRGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinifera
           GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 29/51 (56%), Positives = 39/51 (76%)
 Frame = +2

Query: 2   LECTSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 154
           LECTSC++   + +S G+ RY T KNR NTP RLEL+K+C +C+KHT+H E
Sbjct: 13  LECTSCVRDGVNKESTGISRYITEKNRHNTPGRLELQKFCPYCYKHTIHGE 63