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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946705
Clone id YMU02A01NGRL0013_H10
Library
Length 219
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_H10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAATTGGTGTATGTTAATCTATTTTTGGAAATATTGAGTTTAAGGATGAAATAACCTCC
CTATTAGAACAAAGATATATCCCAAATAAGTATTTAAATGTTATTTCACGTCAATGTAAG
AATTTGACCGATCTTAAAGCATATTGTGAGAGCGCAAGATACAGGGAATTTCTTAGACTT
CCATACCACAAAATAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id B0K2V6
Definition sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase OS=Thermoanaerobacter sp. (strain X514)
Align length 21
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946705|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_H10, 5'
         (189 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase OS=T...    30   5.0  
sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase OS=T...    30   5.0  

>sp|B0K2V6|MTNA_THEPX Methylthioribose-1-phosphate isomerase
          OS=Thermoanaerobacter sp. (strain X514) GN=mtnA PE=3
          SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 31 NIEFKDEITSLLEQRYIPNKY 93
          +IEFK+E+  L++QR +PN Y
Sbjct: 6  SIEFKNEVLYLIDQRKLPNSY 26


>sp|B0K8S2|MTNA_THEP3 Methylthioribose-1-phosphate isomerase
          OS=Thermoanaerobacter pseudethanolicus (strain ATCC
          33223 / 39E) GN=mtnA PE=3 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 31 NIEFKDEITSLLEQRYIPNKY 93
          +IEFK+E+  L++QR +PN Y
Sbjct: 6  SIEFKNEVLYLIDQRKLPNSY 26
tr_hit_id A8ERA5
Definition tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein OS=Arcobacter butzleri (strain RM4018)
Align length 39
Score (bit) 32.7
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946705|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_H10, 5'
         (189 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein OS=Arcob...    33   9.3  

>tr|A8ERA5|A8ERA5_ARCB4 Putative uncharacterized protein
           OS=Arcobacter butzleri (strain RM4018) GN=Abu_0202 PE=4
           SV=1
          Length = 430

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 22  IFGNIEFKDEITSLLEQRYIPNKYLNVISRQCKNLTDLK 138
           I+GN  FK EI  +L+   I     NVI ++  NL DLK
Sbjct: 5   IYGNQRFKKEIYKILDSSQIKKIDNNVIIKEISNLNDLK 43