DK946723 |
Clone id |
YMU02A01NGRL0013_I13 |
Library |
YMU02 |
Length |
499 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_I13. 5' end sequence. |
Accession |
DK946723 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1709Contig1 |
Sequence |
GGGGCTAATGAGAATTAGTGGACCAGTGAATCTTTCCGAAAGAGCGAGCATTCCTATCCT GTAACTACTATCAATCCGTCTCCTTCTTCGTCCTCGCAGAAACCCTAGTCTGCGCTATCT GGGTGAACCCGGAAACAGGATTTCGAATGGCTGCCCGAAACCCAGTGGGAAAGTCTAGCA ATGCTCCAGTAAAGCTTAGGAAACCAGTATTTGTGAAGGTTGACCAGCTGCAGCCTGGTA CTGCAGGACATACGCTCACCGTTAAAGTGGTGAGCTCAAAGACTGTTGTGCAGCGAGCTC GACCTATTGTTAGCAATACACGAAATGTACGAATTGCAGAGTGTGTAGTGGGTGATGAAA CAGGAACCATTATATTTACAGCCAGAAATGAGCAGGTGGACATGATGAAGCCAGATGTGA CTGTCATTCTTCGAAATGCAAAGATTGACATGTTCAAGGGTTGCATGCGGTTGGCTGTTG ATAAATGGGGACGAGTGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O49453 |
Definition |
sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana |
Align length |
123 |
Score (bit) |
123.0 |
E-value |
5.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TST7 |
Definition |
tr|A9TST7|A9TST7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
117 |
Score (bit) |
147.0 |
E-value |
4.0e-34 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946723|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_I13, 5' (499 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TST7|A9TST7_PHYPA Predicted protein OS=Physcomitrella paten... 147 4e-34 tr|A7PMA7|A7PMA7_VITVI Chromosome chr14 scaffold_21, whole genom... 144 2e-33 tr|A9P929|A9P929_POPTR Putative uncharacterized protein OS=Popul... 144 3e-33 tr|A9T5G0|A9T5G0_PHYPA Predicted protein OS=Physcomitrella paten... 143 5e-33 tr|A7PJ85|A7PJ85_VITVI Chromosome chr12 scaffold_18, whole genom... 140 4e-32 tr|B6SHT0|B6SHT0_MAIZE OB-fold nucleic acid binding domain conta... 139 7e-32 tr|A9NWD2|A9NWD2_PICSI Putative uncharacterized protein OS=Picea... 139 1e-31 tr|A9NK64|A9NK64_PICSI Putative uncharacterized protein OS=Picea... 138 1e-31 tr|A9PCG5|A9PCG5_POPTR Putative uncharacterized protein OS=Popul... 137 3e-31 tr|A7QPS6|A7QPS6_VITVI Chromosome chr10 scaffold_138, whole geno... 137 4e-31 tr|A7QNV6|A7QNV6_VITVI Chromosome chr1 scaffold_135, whole genom... 137 4e-31 tr|A5AJH4|A5AJH4_VITVI Putative uncharacterized protein OS=Vitis... 137 4e-31 tr|A9PCK0|A9PCK0_POPTR Putative uncharacterized protein OS=Popul... 136 6e-31 tr|A5C3Z4|A5C3Z4_VITVI Putative uncharacterized protein OS=Vitis... 136 6e-31 tr|A2WML6|A2WML6_ORYSI Putative uncharacterized protein OS=Oryza... 135 8e-31 tr|Q9FTU2|Q9FTU2_ORYSJ cDNA clone:J033067D04, full insert sequen... 135 1e-30 tr|B4FR03|B4FR03_MAIZE OB-fold nucleic acid binding domain conta... 135 1e-30 tr|A5BEE0|A5BEE0_VITVI Putative uncharacterized protein OS=Vitis... 133 4e-30 tr|Q5JML8|Q5JML8_ORYSJ cDNA clone:J013108H01, full insert sequen... 132 9e-30 tr|Q45NM5|Q45NM5_MEDSA Putative uncharacterized protein (Fragmen... 132 1e-29 tr|B8A9R0|B8A9R0_ORYSI Putative uncharacterized protein OS=Oryza... 131 2e-29 tr|Q5W707|Q5W707_ORYSJ Os05g0244600 protein OS=Oryza sativa subs... 130 3e-29 tr|B7FKB1|B7FKB1_MEDTR Putative uncharacterized protein OS=Medic... 130 3e-29 tr|A2Y2A8|A2Y2A8_ORYSI Putative uncharacterized protein OS=Oryza... 130 3e-29 tr|Q9XIJ0|Q9XIJ0_ARATH T10O24.24 OS=Arabidopsis thaliana GN=At1g... 128 1e-28 tr|A7Q767|A7Q767_VITVI Chromosome chr18 scaffold_59, whole genom... 128 1e-28 tr|B4FSC5|B4FSC5_MAIZE OB-fold nucleic acid binding domain conta... 127 2e-28 tr|Q8RYC3|Q8RYC3_ARATH Expressed protein (Putative uncharacteriz... 127 3e-28 tr|B6SL91|B6SL91_MAIZE OB-fold nucleic acid binding domain conta... 127 3e-28 tr|Q9ZUC0|Q9ZUC0_ARATH F5O8.30 protein (Putative uncharacterized... 127 4e-28
>tr|A9TST7|A9TST7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_110528 PE=4 SV=1 Length = 137
Score = 147 bits (370), Expect = 4e-34 Identities = 77/117 (65%), Positives = 86/117 (73%) Frame = +3
Query: 147 MAARNPVGKSSNAPVKLRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRN 326 MA+ NP LRKPVFVKVDQL+PGTAGHTL Q+ARP + R Sbjct: 1 MASPNP---------SLRKPVFVKVDQLRPGTAGHTLTVKVVSTKLVLQKARPDGNQVRQ 51
Query: 327 VRIAECVVGDETGTIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 VRIAEC+VGD+TG I+FTARN+QVD+MK VTVILRNAKIDMFKG MRLAVDKWGRV Sbjct: 52 VRIAECLVGDDTGVIVFTARNDQVDLMKEGVTVILRNAKIDMFKGSMRLAVDKWGRV 108
>tr|A7PMA7|A7PMA7_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020747001 PE=4 SV=1 Length = 137
Score = 144 bits (364), Expect = 2e-33 Identities = 70/101 (69%), Positives = 79/101 (78%) Frame = +3
Query: 195 LRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAECVVGDETGTII 374 +RKPVF KVDQL+PGT+GHTL Q+ RP R +RIAEC+VGDETG I+ Sbjct: 8 MRKPVFTKVDQLRPGTSGHTLTVKVVSSKMVLQKGRPDGPQVRQMRIAECLVGDETGMIV 67
Query: 375 FTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 FTARN+QVD+MKPD TVILRNAKIDMFKG MRLAVDKWGRV Sbjct: 68 FTARNDQVDLMKPDTTVILRNAKIDMFKGSMRLAVDKWGRV 108
>tr|A9P929|A9P929_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 155
Score = 144 bits (362), Expect = 3e-33 Identities = 75/123 (60%), Positives = 86/123 (69%), Gaps = 1/123 (0%) Frame = +3
Query: 132 ETGFRMAARNPVGKSSNAPVKLRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIV 311 +T + S+ A LRKPVF+KVDQL+PGT GHTL Q+ R V Sbjct: 4 QTPIEQQESSSASASAGAKPGLRKPVFIKVDQLKPGTGGHTLTVKVLNFNTVPQKDRRSV 63
Query: 312 S-NTRNVRIAECVVGDETGTIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKW 488 S + R RIAEC++GDETGTIIFTARN+QVD+MKP TVILRNAKIDMFKG MRLAVDKW Sbjct: 64 SLHVRQTRIAECLIGDETGTIIFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRLAVDKW 123
Query: 489 GRV 497 GRV Sbjct: 124 GRV 126
>tr|A9T5G0|A9T5G0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168161 PE=4 SV=1 Length = 138
Score = 143 bits (360), Expect = 5e-33 Identities = 71/101 (70%), Positives = 80/101 (79%) Frame = +3
Query: 195 LRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAECVVGDETGTII 374 LRKPVFVKVDQL+PGT+GHTL Q+ARP + R VRIAEC+VGDETG I+ Sbjct: 8 LRKPVFVKVDQLRPGTSGHTLTVKVVSSKLVLQKARPDGNQVRQVRIAECLVGDETGVIV 67
Query: 375 FTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 FTARNEQVD+MK + +ILRNAKIDMFKG MRLAVDKWGRV Sbjct: 68 FTARNEQVDLMKEGMKLILRNAKIDMFKGSMRLAVDKWGRV 108
>tr|A7PJ85|A7PJ85_VITVI Chromosome chr12 scaffold_18, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018634001 PE=4 SV=1 Length = 148
Score = 140 bits (352), Expect = 4e-32 Identities = 70/105 (66%), Positives = 78/105 (74%) Frame = +3
Query: 183 APVKLRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAECVVGDET 362 A + RKPVF KVDQL+PGT GHTL Q+ R + + R+ RIAEC+VGDET Sbjct: 15 AVTEKRKPVFTKVDQLKPGTGGHTLTVKVVSSKTVLQKGRSVSQHLRHTRIAECLVGDET 74
Query: 363 GTIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 G IIFTARN+QVDMMK TVILRNAKIDMFKG MRLAVDKWGRV Sbjct: 75 GAIIFTARNDQVDMMKAGATVILRNAKIDMFKGSMRLAVDKWGRV 119
>tr|B6SHT0|B6SHT0_MAIZE OB-fold nucleic acid binding domain containing protein OS=Zea mays PE=2 SV=1 Length = 146
Score = 139 bits (350), Expect = 7e-32 Identities = 70/104 (67%), Positives = 80/104 (76%), Gaps = 3/104 (2%) Frame = +3
Query: 195 LRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARP---IVSNTRNVRIAECVVGDETG 365 LRKPVF KVDQL+PGT GHTL RARP +++R RIAEC+VGDETG Sbjct: 15 LRKPVFTKVDQLKPGTNGHTLTVKVVSATPVPGRARPGAPAAASSRAPRIAECLVGDETG 74
Query: 366 TIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 I+FTARN+QVD++KPD TVILRNAKIDMFKG MRLAVDKWGR+ Sbjct: 75 VIVFTARNDQVDLLKPDATVILRNAKIDMFKGSMRLAVDKWGRI 118
>tr|A9NWD2|A9NWD2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 137
Score = 139 bits (349), Expect = 1e-31 Identities = 68/101 (67%), Positives = 78/101 (77%) Frame = +3
Query: 195 LRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAECVVGDETGTII 374 +RKPVF KVDQL+PGT+GHTL Q+ RP S R +RIAEC+VGDETG I+ Sbjct: 8 MRKPVFTKVDQLRPGTSGHTLTVKVVTAKMVLQKGRPDGSQVRQMRIAECLVGDETGVIV 67
Query: 375 FTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 FTARNEQVD++K TVILRNAKIDMF+G MRLAVDKWGRV Sbjct: 68 FTARNEQVDLVKAGSTVILRNAKIDMFRGSMRLAVDKWGRV 108
>tr|A9NK64|A9NK64_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 140
Score = 138 bits (348), Expect = 1e-31 Identities = 69/108 (63%), Positives = 80/108 (74%) Frame = +3
Query: 174 SSNAPVKLRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAECVVG 353 +SN LRKPVF K+DQL+PGT+GH L Q+ RP S R +RIAEC++G Sbjct: 5 NSNPNANLRKPVFTKIDQLRPGTSGHNLIVKVTSAKIVLQKGRPD-SQVRQMRIAECLIG 63
Query: 354 DETGTIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 DETG +IFTARNEQVD+MK TVILRNAKIDMFKG MRLAVDKWGR+ Sbjct: 64 DETGIVIFTARNEQVDLMKEGSTVILRNAKIDMFKGSMRLAVDKWGRI 111
>tr|A9PCG5|A9PCG5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 153
Score = 137 bits (345), Expect = 3e-31 Identities = 71/111 (63%), Positives = 82/111 (73%), Gaps = 2/111 (1%) Frame = +3
Query: 171 KSSNAPVK--LRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAEC 344 +SSNA K LRKPVF KVD L+PGT GHTL + R + + R RIAEC Sbjct: 14 ESSNAGGKPGLRKPVFTKVDLLKPGTGGHTLTVKVLNSIAVLPKGRSVSHHLRQSRIAEC 73
Query: 345 VVGDETGTIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 ++GD+TG+IIFTARNEQVD++KP TVILRNAKIDMFKG MRLAVDKWGRV Sbjct: 74 LIGDDTGSIIFTARNEQVDLVKPGTTVILRNAKIDMFKGSMRLAVDKWGRV 124
>tr|A7QPS6|A7QPS6_VITVI Chromosome chr10 scaffold_138, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003057001 PE=4 SV=1 Length = 149
Score = 137 bits (344), Expect = 4e-31 Identities = 68/109 (62%), Positives = 82/109 (75%) Frame = +3
Query: 171 KSSNAPVKLRKPVFVKVDQLQPGTAGHTLXXXXXXXXXXXQRARPIVSNTRNVRIAECVV 350 + S+ P+ +RKPVF KV QL+PGT+GHTL + R N R+ IAEC++ Sbjct: 13 QGSSKPM-MRKPVFTKVYQLKPGTSGHTLIANVLSSNTVLHKGRAAPQNLRHTCIAECLI 71
Query: 351 GDETGTIIFTARNEQVDMMKPDVTVILRNAKIDMFKGCMRLAVDKWGRV 497 GDETGTIIFTARN+QVD+MKP+ TVI+RNAKIDMFKG MRLAVDKWGRV Sbjct: 72 GDETGTIIFTARNDQVDLMKPETTVIIRNAKIDMFKGSMRLAVDKWGRV 120
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