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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946736
Clone id YMU02A01NGRL0013_J07
Library
Length 305
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_J07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAACATGCAGCAACAAGGGTACCGCATCTCCTTCAACTTGGCCACGTCACGTGTCGGCT
TTGCAAGCAATCAATGCTGAGAGAAAAGAGCATGGCGCATACCCTCCTACACCGCCTCGC
CTACCTACCAGCAGCTGCTCTACTAGCCTAGCTTCACGTGAAAAGGTCAGCTTCTTCTTT
ACGAGGCGCTTTGTTTTCTAGCCCGTGTACCTAACGCTTCCCCTTTTTATTGTAAACCTT
AGGCCTATATATTCAATGAAGGTTTCCTCCAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id P16791
Definition sp|P16791|UL50_HCMVA Protein UL50 OS=Human cytomegalovirus (strain AD169)
Align length 52
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946736|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_J07, 5'
         (270 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16791|UL50_HCMVA Protein UL50 OS=Human cytomegalovirus (stra...    32   1.3  
sp|P70268|PKN1_MOUSE Serine/threonine-protein kinase N1 OS=Mus m...    29   6.4  

>sp|P16791|UL50_HCMVA Protein UL50 OS=Human cytomegalovirus (strain
           AD169) GN=UL50 PE=3 SV=1
          Length = 397

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 4   TCSNKGTASPSTWPRHVSA-LQAINAERKEHGAYPPTPPRLPTSSCSTSLAS 156
           T S+   + PS W   +SA L     +R    A PP PPR P  SCS ++ +
Sbjct: 183 TVSSHSGSGPSLWRARMSAALTRTAGKRSSRTASPPPPPRHP--SCSPTMVA 232


>sp|P70268|PKN1_MOUSE Serine/threonine-protein kinase N1 OS=Mus
           musculus GN=Pkn1 PE=1 SV=3
          Length = 946

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 1   ATCSNKGTASPSTWPRHVS--ALQAINAERKEHGAYPPTPPRLPTSSCSTSLASREKVS 171
           AT +    ASP    RH    +++ +N       +   +PP LP++SCS S  + E  +
Sbjct: 531 ATGTFSPNASPGAEIRHTGDISMEKLNLGADSDSSSQKSPPGLPSTSCSLSSPTHESTT 589
tr_hit_id Q9C6M0
Definition tr|Q9C6M0|Q9C6M0_ARATH Putative uncharacterized protein F2J7.6 (Putative uncharacterized protein At1g25510) OS=Arabidopsis thaliana
Align length 25
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946736|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_J07, 5'
         (270 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9C6M0|Q9C6M0_ARATH Putative uncharacterized protein F2J7.6 (...    39   0.17 
tr|A2WKH1|A2WKH1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|Q9LNJ3|Q9LNJ3_ARATH F6F3.10 protein (At1g01300) (Chloroplast ...    37   0.37 
tr|Q8L9B9|Q8L9B9_ARATH Chloroplast nucleoid DNA binding protein,...    37   0.37 
tr|Q0WLZ1|Q0WLZ1_ARATH Chloroplast nucleoid DNA binding protein ...    37   0.37 
tr|O82671|O82671_CICAR Putative uncharacterized protein (Fragmen...    37   0.37 
tr|A9PCK2|A9PCK2_POPTR Putative uncharacterized protein OS=Popul...    37   0.37 
tr|A5AKV9|A5AKV9_VITVI Putative uncharacterized protein (Chromos...    37   0.37 
tr|A9NUE4|A9NUE4_PICSI Putative uncharacterized protein OS=Picea...    37   0.49 
tr|Q9AWT3|Q9AWT3_ORYSJ cDNA clone:J013170M01, full insert sequen...    37   0.64 
tr|B8LP16|B8LP16_PICSI Putative uncharacterized protein OS=Picea...    37   0.64 
tr|B8LLE4|B8LLE4_PICSI Putative uncharacterized protein OS=Picea...    37   0.64 
tr|A9NV19|A9NV19_PICSI Putative uncharacterized protein OS=Picea...    37   0.64 
tr|Q9M356|Q9M356_ARATH Putative uncharacterized protein F15G16.2...    36   0.83 
tr|Q6F4N5|Q6F4N5_ORYSJ Os03g0186900 protein OS=Oryza sativa subs...    35   2.4  
tr|A7P351|A7P351_VITVI Chromosome chr1 scaffold_5, whole genome ...    35   2.4  
tr|A3AEX2|A3AEX2_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A3LSL0|A3LSL0_PICST Predicted protein (Fragment) OS=Pichia st...    34   3.1  
tr|B8LRL7|B8LRL7_PICSI Putative uncharacterized protein OS=Picea...    34   3.2  
tr|A9PGU5|A9PGU5_POPTR Putative uncharacterized protein OS=Popul...    34   3.2  
tr|A7PGQ3|A7PGQ3_VITVI Chromosome chr17 scaffold_16, whole genom...    34   3.2  
tr|A2XDB9|A2XDB9_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  
tr|A9NV06|A9NV06_PICSI Putative uncharacterized protein OS=Picea...    34   4.1  
tr|Q95RH8|Q95RH8_DROME LD28680p OS=Drosophila melanogaster GN=CG...    33   5.4  
tr|Q8IPF7|Q8IPF7_DROME CG31898 OS=Drosophila melanogaster GN=CG3...    33   5.4  
tr|Q4D4T1|Q4D4T1_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.1  
tr|A7URC8|A7URC8_ANOGA AGAP007452-PA OS=Anopheles gambiae GN=AGA...    33   9.1  
tr|Q8W0E9|Q8W0E9_ORYSJ Chloroplast nucleoid DNA-binding protein ...    33   9.2  
tr|B8LN55|B8LN55_PICSI Putative uncharacterized protein OS=Picea...    33   9.2  
tr|A2ZXA9|A2ZXA9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  

>tr|Q9C6M0|Q9C6M0_ARATH Putative uncharacterized protein F2J7.6
           (Putative uncharacterized protein At1g25510)
           OS=Arabidopsis thaliana GN=At1g25510 PE=2 SV=1
          Length = 483

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG R++F+LA S +GF+SN+C
Sbjct: 459 NVQQQGTRVTFDLANSLIGFSSNKC 483


>tr|A2WKH1|A2WKH1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00323 PE=4 SV=1
          Length = 500

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG R+SF+ A S VGF SN+C
Sbjct: 476 NVQQQGTRVSFDTAKSTVGFTSNKC 500


>tr|Q9LNJ3|Q9LNJ3_ARATH F6F3.10 protein (At1g01300) (Chloroplast
           nucleoid DNA binding protein, putative) OS=Arabidopsis
           thaliana GN=At1g01300 PE=2 SV=1
          Length = 485

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG+R+ ++LA+SRVGFA   C
Sbjct: 460 NIQQQGFRVVYDLASSRVGFAPGGC 484


>tr|Q8L9B9|Q8L9B9_ARATH Chloroplast nucleoid DNA binding protein,
           putative OS=Arabidopsis thaliana PE=2 SV=1
          Length = 485

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG+R+ ++LA+SRVGFA   C
Sbjct: 460 NIQQQGFRVVYDLASSRVGFAPGGC 484


>tr|Q0WLZ1|Q0WLZ1_ARATH Chloroplast nucleoid DNA binding protein
           like (Fragment) OS=Arabidopsis thaliana GN=At1g01300
           PE=2 SV=1
          Length = 142

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG+R+ ++LA+SRVGFA   C
Sbjct: 117 NIQQQGFRVVYDLASSRVGFAPGGC 141


>tr|O82671|O82671_CICAR Putative uncharacterized protein (Fragment)
           OS=Cicer arietinum PE=2 SV=1
          Length = 110

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG R+SF++A S VGF+ N+C
Sbjct: 86  NVQQQGTRVSFDIANSLVGFSPNKC 110


>tr|A9PCK2|A9PCK2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 499

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 14/25 (56%), Positives = 22/25 (88%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG R++F+LA +R+GF+ N+C
Sbjct: 474 NVQQQGTRVTFDLANNRMGFSPNKC 498


>tr|A5AKV9|A5AKV9_VITVI Putative uncharacterized protein (Chromosome
           undetermined scaffold_203, whole genome shotgun
           sequence) OS=Vitis vinifera GN=GSVIVT00008623001 PE=4
           SV=1
          Length = 489

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 14/25 (56%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG+R+ F++A SR+GFA+  C
Sbjct: 464 NIQQQGFRVVFDVAASRIGFAARGC 488


>tr|A9NUE4|A9NUE4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 485

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG R+SF+ A ++VGFA N+C
Sbjct: 461 NIQQQGIRVSFDRANNQVGFAVNKC 485


>tr|Q9AWT3|Q9AWT3_ORYSJ cDNA clone:J013170M01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0480E02.14 PE=2 SV=1
          Length = 504

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 3   NMQQQGYRISFNLATSRVGFASNQC 77
           N+QQQG R+SF+ A S VGF +N+C
Sbjct: 480 NVQQQGTRVSFDTAKSTVGFTTNKC 504