DK946741 [AcEST]

DK946741
Clone id	YMU02A01NGRL0013_J13
Library	YMU02
Length	523
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_J13. 5' end sequence.
Accession	DK946741
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL810Contig1
Sequence	CGCATGTGTAAAAATCCCAAGATGAGTAAGAAAGGCAAGTAAGAGGAGGTGACTGGTTCC TGTGTATAATTTTTTTCCTGCCAAGCAACCTTGGCAGCCTATATAGTGCAAATTATACAT TGAAGGCTGCAACACAGTCCGCAGCACATTTCAATGACAAATGAGAAGATGGACACTTTC ATGAAACGTGCCTTCTACTTCAATAATTTTTCAAGGTACAGAGTGGATTGTTCAGAATTG TACCTACCATTACAGATCCTCCTCATTGTGGCTGTCTTAAGATTTTAGACAGCTATCGTT TCCAGGTTGAACACATTATTTTTATAAACACATTAGTTTGTAAGAAACCTCTGCCGATCC TCTCCCTTGTAACACAAATCTTACGGTTGTCTAATTGGCATATGATTGTGTAACAACAGA GTGGTACTAATCACATTGTATTTGATAGGTGATTATATTTCTTTTGTGTCGCATATGANA TCTGTGTGAGCCTATATAGAAGGCCGAAAGATGTTTTGTAAGA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	P24892
Definition	sp\|P24892\|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4 OS=Caenorhabditis elegans
Align length	16
Score (bit)	29.6
E-value	9.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946741\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_J13, 5' (523 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|P24892\|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4 OS=C... 30 9.0 sp\|Q9JRX2\|Y129_CHLPN Uncharacterized protein CPn_0129/CPn_0130/C... 30 9.1 >sp\|P24892\|NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4 OS=Caenorhabditis elegans GN=nd4 PE=3 SV=2 Length = 409 Score = 29.6 bits (65), Expect = 9.0 Identities = 11/16 (68%), Positives = 14/16 (87%) Frame = +3 Query: 57 FLCIIFFLPSNLGSLY 104 F+CIIFF+PSN+ LY Sbjct: 79 FICIIFFIPSNMMMLY 94 >sp\|Q9JRX2\|Y129_CHLPN Uncharacterized protein CPn_0129/CPn_0130/CP_0642/CPj0130/CpB0131 OS=Chlamydia pneumoniae GN=CPn_0129/CPn_0130 PE=3 SV=1 Length = 394 Score = 29.6 bits (65), Expect = 9.1 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -1 Query: 511 SFGLLYRLTQXSYATQKKYNHLSNTM*LVPLCCYTIICQLDNRKI 377 SFGLL+ + SYA+ N L++++ L Y +I + D KI Sbjct: 341 SFGLLHGYEEMSYASNNIRNVLTHSIVLCSPILYQLITEFDTTKI 385
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q8XQ59
Definition	tr\|Q8XQ59\|Q8XQ59_RALSO Probable signal peptide protein OS=Ralstonia solanacearum
Align length	45
Score (bit)	34.7
E-value	2.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946741\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_J13, 5' (523 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q8XQ59\|Q8XQ59_RALSO Probable signal peptide protein OS=Ralsto... 35 2.9 >tr\|Q8XQ59\|Q8XQ59_RALSO Probable signal peptide protein OS=Ralstonia solanacearum GN=RSp1427 PE=4 SV=1 Length = 317 Score = 34.7 bits (78), Expect = 2.9 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +3 Query: 267 CGCLKILDSYRFQVEHIIFINTLVCKKPLPILSLVTQILRLSNWH 401 CG + I+ S R Q +H + N L+C + LP+L L T L WH Sbjct: 171 CGGVYIVASSRAQRKHALTANDLICIR-LPLLLLATAALSAPEWH 214