NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946751
Clone id YMU02A01NGRL0013_K02
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_K02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGAGGCGCGGTAAGCTCTTCA
GAATTTCAGATCCCCCTGGAAATGGAAGGCCAGAACGAACGTAGAGAGTGCTCGATGACA
GAGTCATGGATTTTCTCCATCATAGCATGCGCAATTGCCGTCCCATATGGCATTCGAAAG
AAGTCGTTGGCACCCCTTGTCTTCTTTGGTTCCACGGGCGCCATGCTGGATATCATCATG
AGTGTCAGCGCCTGTGAAAGAGAGTTTCAGGAGAGACAGCAGGAACTTCTGCTTCAAAAG
CAGCAGCAACAGCAGCAGCAGGACTCGCCTCCCCGTGCATTTGTTGATGAGGACGCCATT
GAATGAGCCCTCTGACATCGTGCAGACGTCATCCTACATGAAGTGCCATGATTTTGTACT
GTGGCTTTTTCTCCCTATCGACCATTGTGTTCTTGTTCGGTATCGATGTTGCTGATGAGG
TGCAAAACAGTCAGCATTGTATGGGTTTTACCGAGTGTCAATATTTGTGAATGGTGCTGG
TGTTGTCTTTCATACAAGTTG
■■Homology search results ■■ -
sp_hit_id Q4KMP7
Definition sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapiens
Align length 52
Score (bit) 30.8
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946751|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_K02, 5'
         (521 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapi...    31   4.0  
sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus muscu...    30   9.0  

>sp|Q4KMP7|TB10B_HUMAN TBC1 domain family member 10B OS=Homo sapiens
           GN=TBC1D10B PE=1 SV=2
          Length = 533

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -3

Query: 447 FCTSSATSIPNKNTMVDREKKPQYKIMALHVG*RLHDVRGLIQWRPHQQMHG 292
           F     T++P    +++RE   Q K        +  + RG +Q+RP +++HG
Sbjct: 320 FLVHEVTNLPVTEALIERENAAQLK--------KWRETRGELQYRPSRRLHG 363


>sp|Q8BHL3|TB10B_MOUSE TBC1 domain family member 10B OS=Mus musculus
           GN=Tbc1d10b PE=1 SV=1
          Length = 537

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = -3

Query: 447 FCTSSATSIPNKNTMVDREKKPQYKIMALHVG*RLHDVRGLIQWRPHQQMHG 292
           F     T++P     ++RE   Q K        +  + RG +Q+RP +++HG
Sbjct: 320 FLVHEVTNLPVTEAWIERENAAQLK--------KWRETRGELQYRPSRRLHG 363
tr_hit_id A9TYX9
Definition tr|A9TYX9|A9TYX9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 44
Score (bit) 71.2
E-value 3.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946751|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_K02, 5'
         (521 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TYX9|A9TYX9_PHYPA Predicted protein (Fragment) OS=Physcomit...    71   3e-11
tr|Q2QQW1|Q2QQW1_ORYSJ Os12g0481200 protein OS=Oryza sativa subs...    70   8e-11
tr|B8BPN0|B8BPN0_ORYSI Putative uncharacterized protein OS=Oryza...    70   8e-11
tr|A7PC42|A7PC42_VITVI Chromosome chr2 scaffold_11, whole genome...    70   8e-11
tr|B6T8E1|B6T8E1_MAIZE Putative uncharacterized protein OS=Zea m...    68   2e-10
tr|A5BZQ3|A5BZQ3_VITVI Putative uncharacterized protein OS=Vitis...    68   2e-10
tr|Q84VW7|Q84VW7_ARATH At1g21930 (Putative uncharacterized prote...    67   7e-10
tr|A3CHC0|A3CHC0_ORYSJ Putative uncharacterized protein OS=Oryza...    67   7e-10
tr|Q9M2N7|Q9M2N7_ARATH Putative uncharacterized protein T27B3.20...    66   9e-10
tr|A9RB34|A9RB34_PHYPA Predicted protein (Fragment) OS=Physcomit...    55   2e-06

>tr|A9TYX9|A9TYX9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_9463 PE=4 SV=1
          Length = 53

 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 32/44 (72%), Positives = 38/44 (86%)
 Frame = +3

Query: 84  SWIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           SWIFS++  AIA+P GI+KKSLAPLVFFGSTGAMLDI+ S + C
Sbjct: 4   SWIFSLLGAAIAIPVGIKKKSLAPLVFFGSTGAMLDIVQSFADC 47


>tr|Q2QQW1|Q2QQW1_ORYSJ Os12g0481200 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0481200 PE=4 SV=2
          Length = 92

 Score = 69.7 bits (169), Expect = 8e-11
 Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
 Frame = +3

Query: 48  GQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           G+ +  +C+++ +   W FS+    +A+P GI+KKSLAPLVFFG+TG MLDIIM +S C
Sbjct: 7   GEKQLEDCTVSNALGTWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQC 65


>tr|B8BPN0|B8BPN0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38329 PE=4 SV=1
          Length = 92

 Score = 69.7 bits (169), Expect = 8e-11
 Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 3/59 (5%)
 Frame = +3

Query: 48  GQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           G+ +  +C+++ +   W FS+    +A+P GI+KKSLAPLVFFG+TG MLDIIM +S C
Sbjct: 7   GEKQLEDCTVSNALGTWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQC 65


>tr|A7PC42|A7PC42_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015702001
           PE=4 SV=1
          Length = 85

 Score = 69.7 bits (169), Expect = 8e-11
 Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
 Frame = +3

Query: 45  EGQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           E   +  ECS+  +   W+FS+    +A+P GI++KSLAPLVFFG+TG M+DIIM +SAC
Sbjct: 5   ETVKQLEECSVANALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMIDIIMGISAC 64


>tr|B6T8E1|B6T8E1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 101

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 29/59 (49%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
 Frame = +3

Query: 48  GQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           G+ +  +C++  +   W FS+    +A+P GI+KKSLAPLVFFG+TG MLDIIM ++ C
Sbjct: 7   GEKQLEDCTVANALGTWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGITQC 65


>tr|A5BZQ3|A5BZQ3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_028372 PE=4 SV=1
          Length = 91

 Score = 68.2 bits (165), Expect = 2e-10
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +3

Query: 63  RECSMTESWIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           R C++  +W+FS+    +A+P GI++KSLAPLVFFG+TG M+DIIM +SAC
Sbjct: 21  RPCALG-TWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMIDIIMGISAC 70


>tr|Q84VW7|Q84VW7_ARATH At1g21930 (Putative uncharacterized protein
           At1g21930) OS=Arabidopsis thaliana GN=At1g21930 PE=4
           SV=1
          Length = 98

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
 Frame = +3

Query: 45  EGQNERRECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           E      EC+++ +   W+FS++   +A+P GI++KSL PLVFFG+TG MLDII+ VS C
Sbjct: 5   ENVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIGVSQC 64


>tr|A3CHC0|A3CHC0_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034692 PE=4 SV=1
          Length = 96

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 28/44 (63%), Positives = 35/44 (79%)
 Frame = +3

Query: 84  SWIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           +W FS+    +A+P GI+KKSLAPLVFFG+TG MLDIIM +S C
Sbjct: 26  TWFFSVAGALVAIPVGIKKKSLAPLVFFGTTGTMLDIIMGISQC 69


>tr|Q9M2N7|Q9M2N7_ARATH Putative uncharacterized protein T27B3.20
           OS=Arabidopsis thaliana GN=At3g42150 PE=4 SV=1
          Length = 100

 Score = 66.2 bits (160), Expect = 9e-10
 Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 3/53 (5%)
 Frame = +3

Query: 66  ECSMTES---WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMSVSAC 215
           EC+++ +   W+FS++   +A+P GI++KSL PLVFFG+TG MLDII+ VS C
Sbjct: 12  ECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIGVSQC 64


>tr|A9RB34|A9RB34_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_29420 PE=4 SV=1
          Length = 52

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/39 (64%), Positives = 30/39 (76%)
 Frame = +3

Query: 87  WIFSIIACAIAVPYGIRKKSLAPLVFFGSTGAMLDIIMS 203
           WI  ++  AIA+P GI+KKSLAPLV  GS GAMLDI+ S
Sbjct: 1   WISLVLVAAIAIPVGIKKKSLAPLVLLGSNGAMLDIVQS 39