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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946761
Clone id YMU02A01NGRL0013_K15
Library
Length 476
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_K15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAGTTGCAGTTAAAAGTGTGATGCAGCGGATGATGAGACTGAAGCCTCAGGTAAGAGAA
GCCGACAAGGGGCGAAGCCAAAGAAGGATGCTATGGTCTCTGGGGCTGGCCGAGCGTAGA
GGAAAGCTCCAAGGATTTGATTGTTCCAACTCTTGTATCTTCTAGAAGCGGTAAATGTGG
ATGCTGGATTCTTCAAGGTGATGTTGGTGATGATGGAGAGCTTGGGCAGTAGTGTAAATG
CTGGCCTAGAAGAAATGCCCAGAATGATACATGTCTTGCATAAGAGGGAAGTGGTGGCTC
CATTTGGCCACCAGTGTTAGGTATTTGATGTATTCCTTATGTTGTTTTCATATATCCAAG
ATGGAGGAGACTTGTGTATACTCATTATGCCCTCAAATCTTTAGGGGGAGGGGCTGTTAA
TGTCCTTTTGTAAGATGTACTCATATATCCAACATTGATGTGATTACGTAAGTTGC
■■Homology search results ■■ -
sp_hit_id Q54ML4
Definition sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog OS=Dictyostelium discoideum
Align length 60
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946761|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_K15, 5'
         (476 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog O...    32   1.5  
sp|P46947|CWC26_YEAST Pre-mRNA-splicing factor CWC26 OS=Saccharo...    31   3.2  
sp|Q42396|CDPKC_ARATH Calcium-dependent protein kinase 12 OS=Ara...    30   7.2  
sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1 OS=Arab...    27   8.9  
sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles g...    29   9.4  
sp|Q1GVK1|NHAA_SPHAL Na(+)/H(+) antiporter nhaA OS=Sphingopyxis ...    29   9.4  

>sp|Q54ML4|HEAT1_DICDI HEAT repeat-containing protein 1 homolog
            OS=Dictyostelium discoideum GN=heatr1 PE=3 SV=1
          Length = 2237

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 30   DDETEASGKRSRQGAKPKKDAMVSGAGRA*RKAPRI*LFQLLYLLEAVNVDAGFFKVMLV 209
            DDE   S        KPKK  +V+G  ++ +  P I    LL+  + VN  A   K + V
Sbjct: 1929 DDEENGSDDEESDEDKPKKKKLVNGKSKSTKTQPEISKDNLLFFYKIVNSLASNLKTIFV 1988


>sp|P46947|CWC26_YEAST Pre-mRNA-splicing factor CWC26
           OS=Saccharomyces cerevisiae GN=BUD13 PE=1 SV=1
          Length = 266

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -2

Query: 208 TNITLKNPASTFTASRRYKSWNNQILGAFLYARPAPE 98
           +++T+++PA TFT  +  ++    +LG  LY +PAPE
Sbjct: 186 SSLTIEDPAITFTHDKE-RTVKTSLLGRKLYDKPAPE 221


>sp|Q42396|CDPKC_ARATH Calcium-dependent protein kinase 12
           OS=Arabidopsis thaliana GN=CPK12 PE=1 SV=1
          Length = 490

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +2

Query: 107 WPSVEESSKDLIVPTLVSSRSGK-------CGCWILQGDVGDDGEL 223
           WPS+ ES+KDLI   L S+   +       C  WI+   V  D  L
Sbjct: 246 WPSISESAKDLIKKMLESNPKKRLTAHQVLCHPWIVDDKVAPDKPL 291


>sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1
           OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1
          Length = 610

 Score = 26.6 bits (57), Expect(2) = 8.9
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
 Frame = +2

Query: 107 WPSVEESSKDLIVPTLV-------SSRSGKCGCWILQGDVGDDGEL 223
           WPS+ ES+KDL+   LV       ++    C  W+    V  D  L
Sbjct: 374 WPSISESAKDLVRKMLVRDPKKRLTAHQVLCHPWVQVDGVAPDKPL 419



 Score = 20.8 bits (42), Expect(2) = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 207 VMMESLGSSVNAGLEEMPRMI 269
           V+ ESL     AGL+EM  MI
Sbjct: 443 VIAESLSEEEIAGLKEMFNMI 463


>sp|Q08AA9|NKD_ANOGA Protein naked cuticle homolog OS=Anopheles
           gambiae GN=nkd PE=2 SV=1
          Length = 886

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 298 ATTSLLCKTCIILGISSRPAFTLLPKLSIITNITLKNPASTFTASRRYK 152
           +T +L+C  C+  G    P  TLLP LS +  + +  P++  T   + K
Sbjct: 457 STAALICHDCVDGGA---PTTTLLPPLSTLETVVIPAPSAGVTGRAKRK 502


>sp|Q1GVK1|NHAA_SPHAL Na(+)/H(+) antiporter nhaA OS=Sphingopyxis
           alaskensis GN=nhaA PE=3 SV=1
          Length = 424

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 84  SLASPLVGFSYLRLQSHHPLHH 19
           SLAS LVGF+ LRL   HP H+
Sbjct: 379 SLASALVGFAVLRLAPLHPEHN 400
tr_hit_id Q2YCH0
Definition tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)
Align length 47
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946761|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_K15, 5'
         (476 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis OS=Nitros...    35   2.4  
tr|B0WIZ4|B0WIZ4_CULQU Putative uncharacterized protein OS=Culex...    33   5.4  
tr|Q4J025|Q4J025_AZOVI Putative uncharacterized protein OS=Azoto...    33   9.2  

>tr|Q2YCH0|Q2YCH0_NITMU Lipopolysaccharide biosynthesis
           OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB
           11849) GN=Nmul_A0243 PE=4 SV=1
          Length = 463

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = -2

Query: 259 GISSRPAFTLLPKLSIITNITLKNPASTFTASRRYKSWNNQILGAFL 119
           GIS R A T L  LS+ TNIT  NPAS  +     K   N ++  FL
Sbjct: 359 GISQRSALTRLESLSVQTNITPLNPASVPSEPSSPKLLLNTLISIFL 405


>tr|B0WIZ4|B0WIZ4_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ007310 PE=4 SV=1
          Length = 640

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -3

Query: 171 PLLEDTRVGTIKSLELSSTLGQPQRP*HPSLASPLVGFSYLRLQS-------HHPLHH 19
           PL   ++VG+ ++     T   P  P HPS A+P +G S L + S       HHP HH
Sbjct: 353 PLSLSSKVGS-RTATPPMTAQSPSVPHHPSAAAPAIGGSPLSVNSTNIASINHHPHHH 409


>tr|Q4J025|Q4J025_AZOVI Putative uncharacterized protein
           OS=Azotobacter vinelandii DJ GN=AvinDRAFT_5141 PE=4 SV=1
          Length = 215

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 302 IWPPVLGI*CIPYVVFIYPRWRR--LVYTHYALKSLG 406
           +W PVLG    P V+++Y RWR+  + Y+++ +  LG
Sbjct: 101 VWIPVLGALWAPIVIYLYRRWRKNSVRYSYWIVLILG 137