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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946766
Clone id YMU02A01NGRL0013_K20
Library
Length 358
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_K20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GGAAACAACATTTGCTTTACTGGATTCTACAAGCCCCAAAAATCGGATTTTACTAGACCT
CTATCTCAGAGATTCATTCTGGGTGACTATACCTAAGAGGTTGTAGAGCAAGCTGAAGTA
GGGCATCTGCTTGCACTCTTTTAAAAGTGTCACGATTTTAGTGTACTTCCACTCCGTGGT
ACGGTGATGATATAAGCATTGAATCAAAAGCAGAGCTCAGAGTGAAATAGGTGGCTCTCT
TCATCATGTTAGCAAATAAGTAAATGAATCAGAAGGGGATGAGAGTTTTGTAATTTCGGT
GTCTTATAATTTCAGCTTAGATTGGCTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P11454
Definition sp|P11454|ENTF_ECOLI Enterobactin synthetase component F OS=Escherichia coli (strain K12)
Align length 47
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946766|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_K20, 5'
         (330 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11454|ENTF_ECOLI Enterobactin synthetase component F OS=Esch...    30   2.9  
sp|Q8XBV9|ENTF_ECO57 Enterobactin synthetase component F OS=Esch...    30   2.9  
sp|Q50EW2|L_MPV15 Large structural protein OS=Murine pneumonia v...    29   6.4  

>sp|P11454|ENTF_ECOLI Enterobactin synthetase component F
            OS=Escherichia coli (strain K12) GN=entF PE=1 SV=3
          Length = 1293

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 156  IVTLLKECKQMPYFSLLYNLLGIVTQN--ESLR*RSSKIRFLGLVES 22
            + TLL++    PY+ L Y+L G + Q     LR R  ++ FLGL+++
Sbjct: 1120 LATLLEQQPHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDT 1166


>sp|Q8XBV9|ENTF_ECO57 Enterobactin synthetase component F
            OS=Escherichia coli O157:H7 GN=entF PE=3 SV=1
          Length = 1293

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -1

Query: 156  IVTLLKECKQMPYFSLLYNLLGIVTQN--ESLR*RSSKIRFLGLVES 22
            + TLL++    PY+ L Y+L G + Q     LR R  ++ FLGL+++
Sbjct: 1120 LATLLEQQPHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDT 1166


>sp|Q50EW2|L_MPV15 Large structural protein OS=Murine pneumonia virus
            (strain 15) GN=L PE=3 SV=1
          Length = 2040

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 195  LYHHRTTEWKYTKIVTLLKECKQMPYFSLLYN 100
            +YH++  + KY  I+  LK C ++P F + YN
Sbjct: 1969 VYHNKWLKRKYFNILKWLKYCIELPAFRMDYN 2000
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946766|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_K20, 5'
         (330 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******