DK946770
Clone id YMU02A01NGRL0013_L03
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_L03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTCAAACGACAAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGG
CAAACGACGAAATGCTTCGGGGAGCCGAAAATAGGTATAGATCCGGAGATTCCCGAATAG
GTTAACCTTCCAAACTGCCTGCTAAATTCAGAAGCAGACAAGAGACAACCCGGCGAACTG
AAACATCTTAGTAGCCGGAGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTG
AAACGGGAAGAGCCTAAACCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTT
TACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTA
CAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGC
GAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCGTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 0.79
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946770|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_L03, 5'
(462 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop... 33 0.79
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1 30 5.0
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str... 30 6.5
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra... 30 6.5
sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoral... 30 6.5

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
thaliana GN=DOF5.7 PE=2 SV=1
Length = 316

Score = 32.7 bits (73), Expect = 0.79
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -1

Query: 243 FHSPLLGESLLLFPPPATKMFQFAGLSL 160
F S ++ +S FPPP T FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
Length = 750

Score = 30.0 bits (66), Expect = 5.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +3

Query: 276 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 383
+E ++GF L G AV C P DG++ V + AS NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
AD169) GN=TRS1 PE=3 SV=1
Length = 788

Score = 29.6 bits (65), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3

Query: 324 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 431
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
AD169) GN=IRS1 PE=3 SV=1
Length = 846

Score = 29.6 bits (65), Expect = 6.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3

Query: 324 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 431
C P G AG+ AS+ + ++ GH RV RGPP
Sbjct: 34 CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoralis
(strain HTCC2594) GN=efp PE=3 SV=1
Length = 187

Score = 29.6 bits (65), Expect = 6.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3

Query: 258 TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPS 386
TV+ LWE V L + VE + D+ V G TASS P+
Sbjct: 111 TVQLELWEEKPISVQLPQQVEADIVEADAVVKGQTASSSYKPA 153


tr_hit_id B7YFX5
Definition tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geobacillus sp. Y412MC61
Align length 90
Score (bit) 74.3
E-value 1.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946770|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_L03, 5'
(462 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba... 74 1e-14
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ... 81 2e-14
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 81 2e-14
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 81 2e-14
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=... 81 2e-14
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome... 45 4e-14
tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a... 80 4e-14
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen... 71 2e-11
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen... 71 2e-11
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1 56 1e-10
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag... 67 4e-10
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh... 64 3e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who... 63 6e-09
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne... 62 2e-08
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio... 49 1e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin... 54 5e-06
tr|A7QXA4|A7QXA4_VITVI Chromosome undetermined scaffold_217, who... 50 2e-05
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1 50 4e-05
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen... 50 7e-05
tr|Q6YSQ6|Q6YSQ6_BRANA Putative uncharacterized protein orf108a ... 49 2e-04
tr|B1SRT8|B1SRT8_9BACI Putative uncharacterized protein OS=Geoba... 35 8e-04
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo... 44 0.003
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo... 44 0.003
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote... 44 0.003
tr|Q8TQC6|Q8TQC6_METAC Predicted protein OS=Methanosarcina aceti... 42 0.012
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche... 42 0.012
tr|A5BTC0|A5BTC0_VITVI Putative uncharacterized protein OS=Vitis... 42 0.012
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo... 42 0.020
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea... 42 0.020
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep... 41 0.026

>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
SV=1
Length = 177

Score = 74.3 bits (181), Expect(2) = 1e-14
Identities = 47/90 (52%), Positives = 52/90 (57%), Gaps = 11/90 (12%)
Frame = -1

Query: 258 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*I*QAVW-----------KVNLFG 112
F LFPF SPLL ES LL PP TKMFQF G +L A+W V FG
Sbjct: 67 FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCAL------HALWIQAWILPHYGQWVPPFG 120

Query: 111 NLRIYTYFRLPEAFRRLPRPSSSLGA*VST 22
+LRI +LPEAFRRLPRPSS+ A ST
Sbjct: 121 HLRINACLQLPEAFRRLPRPSSAPSAKAST 150



Score = 28.1 bits (61), Expect(2) = 1e-14
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3

Query: 427 GPR*FTRDFACPMLLGLERELAVLPATGLSPS 332
GP F RD +CP +L + + TGLSPS
Sbjct: 4 GPPCFRRDSSCPAVLRIRSGGNEVSTTGLSPS 35


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 79

Score = 81.3 bits (199), Expect = 2e-14
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 23 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 71


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 87

Score = 81.3 bits (199), Expect = 2e-14
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 29 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 77


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 90

Score = 81.3 bits (199), Expect = 2e-14
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 32 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 80


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
Length = 85

Score = 81.3 bits (199), Expect = 2e-14
Identities = 37/49 (75%), Positives = 42/49 (85%)
Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
+ECCT DG+SPVA S S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 27 IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 75


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
PE=4 SV=1
Length = 390

Score = 44.7 bits (104), Expect(3) = 4e-14
Identities = 22/41 (53%), Positives = 25/41 (60%)
Frame = -2

Query: 146 FSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYP 24
F++QF RLTY PKHFV +AL RLWVPRYP
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAYYALSRLWVPRYP 348



Score = 43.9 bits (102), Expect(3) = 4e-14
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = -2

Query: 461 IGHSGIFSLTRWSSLIHTGFCVPHAT 384
I H +FSL RWS LIHTGF VPHAT
Sbjct: 247 ISHPEVFSLARWSLLIHTGFHVPHAT 272



Score = 32.0 bits (71), Expect(3) = 4e-14
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -3

Query: 367 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 260
L +L ATG SPS VQH SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
OS=Zea mays GN=orf121-a-ct PE=4 SV=1
Length = 121

Score = 80.5 bits (197), Expect = 4e-14
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +3

Query: 3 QTTKGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAK 146
Q KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPA+
Sbjct: 60 QKRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPAE 107


>tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragment)
OS=Oryza sativa subsp. indica PE=2 SV=1
Length = 59

Score = 71.2 bits (173), Expect = 2e-11
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +3

Query: 12 KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAK 146
KGLRWIPR+PE +KGVA+DEMLRG E ++RSGDS+IG P +LPA+
Sbjct: 1 KGLRWIPRYPEMRKGVASDEMLRGVEIKHRSGDSQIGQPFELPAE 45


>tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragment)
OS=Oryza sativa subsp. indica PE=2 SV=1
Length = 56

Score = 71.2 bits (173), Expect = 2e-11
Identities = 31/42 (73%), Positives = 39/42 (92%)
Frame = +3

Query: 21 RWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAK 146
RWIPR+PET+KGVA+DEMLRG EN++RSGDS+IG P +LPA+
Sbjct: 1 RWIPRYPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPAE 42


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
Length = 124

Score = 55.8 bits (133), Expect(2) = 1e-10
Identities = 37/72 (51%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = -1

Query: 261 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*I*QAVWKVNLFGNLRIYTYFRL 82
RFRL PF SPLL ESLLL P ATKMFQFA LSL C I Q + + G F
Sbjct: 45 RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 81 PE---AFRRLPR 55
P+ A+ LPR
Sbjct: 105 PKHFVAYHALPR 116



Score = 33.5 bits (75), Expect(2) = 1e-10
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -3

Query: 391 MLLGLERELAVLPATGLSPSGVQ 323
MLLGLER+ +L ATGLSPS VQ
Sbjct: 1 MLLGLERKPMMLSATGLSPSRVQ 23



Score = 42.0 bits (97), Expect = 0.015
Identities = 22/47 (46%), Positives = 24/47 (51%)
Frame = -2

Query: 161 LSASEFSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYPP 21
L+ +Q LTY PKHFV HAL RLWVPRYPP
Sbjct: 78 LACPWIQQQLKGLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124