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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946770
Clone id YMU02A01NGRL0013_L03
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_L03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTCAAACGACAAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAAGAAGGGCGTGG
CAAACGACGAAATGCTTCGGGGAGCCGAAAATAGGTATAGATCCGGAGATTCCCGAATAG
GTTAACCTTCCAAACTGCCTGCTAAATTCAGAAGCAGACAAGAGACAACCCGGCGAACTG
AAACATCTTAGTAGCCGGAGGAGGAAAAAGCAAAAGCGATTCCCCTAGTAACGGCGAGTG
AAACGGGAAGAGCCTAAACCGTGAAGACGGGGTTGTGGGAGAGTGATGAGGGCTTCGTTT
TACTAGGCGAAGCAGTTGAGTGCTGCACCCCAGATGGTGATAGTCCAGTAGCCGGAAGTA
CAGCTAGCTCACGCTCCAACCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGC
GAGGACCACCTTGTAAGGCTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCGTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9LSL6
Definition sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana
Align length 28
Score (bit) 32.7
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946770|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_L03, 5'
         (462 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidop...    33   0.79 
sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1        30   5.0  
sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (str...    30   6.5  
sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (stra...    30   6.5  
sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoral...    30   6.5  

>sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7 OS=Arabidopsis
           thaliana GN=DOF5.7 PE=2 SV=1
          Length = 316

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 243 FHSPLLGESLLLFPPPATKMFQFAGLSL 160
           F S ++ +S   FPPP T  FQ AGLSL
Sbjct: 115 FFSSIMEDSSKFFPPPTTMDFQLAGLSL 142


>sp|Q3SYW2|CO2_BOVIN Complement C2 OS=Bos taurus GN=C2 PE=2 SV=1
          Length = 750

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 276 WESDEGFVLLGEAVECCTP----DGDSPVAGSTASSRSNP 383
           +E ++GF L G AV  C P    DG++ V  + AS   NP
Sbjct: 115 FECEDGFTLRGSAVRQCRPNGMWDGETAVCDNGASHCPNP 154


>sp|P09695|TRS1_HCMVA Protein HHLF1 OS=Human cytomegalovirus (strain
           AD169) GN=TRS1 PE=3 SV=1
          Length = 788

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 324 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 431
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|P09715|IRS1_HCMVA Protein IRS1 OS=Human cytomegalovirus (strain
           AD169) GN=IRS1 PE=3 SV=1
          Length = 846

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 324 CTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPP 431
           C P G    AG+ AS+ +  ++ GH   RV  RGPP
Sbjct: 34  CVPMGAPSTAGTGASAAAT-TTPGHGVHRVEPRGPP 68


>sp|Q2NAZ6|EFP_ERYLH Elongation factor P OS=Erythrobacter litoralis
           (strain HTCC2594) GN=efp PE=3 SV=1
          Length = 187

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 258 TVKTGLWESDEGFVLLGEAVECCTPDGDSPVAGSTASSRSNPS 386
           TV+  LWE     V L + VE    + D+ V G TASS   P+
Sbjct: 111 TVQLELWEEKPISVQLPQQVEADIVEADAVVKGQTASSSYKPA 153
tr_hit_id B7YFX5
Definition tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geobacillus sp. Y412MC61
Align length 90
Score (bit) 74.3
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946770|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_L03, 5'
         (462 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein OS=Geoba...    74   1e-14
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    81   2e-14
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    81   2e-14
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    81   2e-14
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    81   2e-14
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    45   4e-14
tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a...    80   4e-14
tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragmen...    71   2e-11
tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragmen...    71   2e-11
tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1            56   1e-10
tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    67   4e-10
tr|A7R8H6|A7R8H6_VITVI Chromosome undetermined scaffold_2564, wh...    64   3e-09
tr|A7R075|A7R075_VITVI Chromosome undetermined scaffold_298, who...    63   6e-09
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    62   2e-08
tr|B0THV2|B0THV2_HELMI Putative uncharacterized protein OS=Helio...    49   1e-06
tr|B7RDP9|B7RDP9_9THEM Putative uncharacterized protein OS=Marin...    54   5e-06
tr|A7QXA4|A7QXA4_VITVI Chromosome undetermined scaffold_217, who...    50   2e-05
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            50   4e-05
tr|A6MZ94|A6MZ94_ORYSI Putative uncharacterized protein (Fragmen...    50   7e-05
tr|Q6YSQ6|Q6YSQ6_BRANA Putative uncharacterized protein orf108a ...    49   2e-04
tr|B1SRT8|B1SRT8_9BACI Putative uncharacterized protein OS=Geoba...    35   8e-04
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    44   0.003
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    44   0.003
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|Q8TQC6|Q8TQC6_METAC Predicted protein OS=Methanosarcina aceti...    42   0.012
tr|Q1R3T8|Q1R3T8_ECOUT Putative uncharacterized protein OS=Esche...    42   0.012
tr|A5BTC0|A5BTC0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.012
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    42   0.020
tr|A6BKY6|A6BKY6_9FIRM Putative uncharacterized protein OS=Dorea...    42   0.020
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    41   0.026

>tr|B7YFX5|B7YFX5_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC61 GN=GYMC61DRAFT_3653 PE=4
           SV=1
          Length = 177

 Score = 74.3 bits (181), Expect(2) = 1e-14
 Identities = 47/90 (52%), Positives = 52/90 (57%), Gaps = 11/90 (12%)
 Frame = -1

Query: 258 FRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*I*QAVW-----------KVNLFG 112
           F LFPF SPLL ES LL  PP TKMFQF G +L       A+W            V  FG
Sbjct: 67  FGLFPFRSPLLRESRLLSSPPGTKMFQFPGCAL------HALWIQAWILPHYGQWVPPFG 120

Query: 111 NLRIYTYFRLPEAFRRLPRPSSSLGA*VST 22
           +LRI    +LPEAFRRLPRPSS+  A  ST
Sbjct: 121 HLRINACLQLPEAFRRLPRPSSAPSAKAST 150



 Score = 28.1 bits (61), Expect(2) = 1e-14
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 427 GPR*FTRDFACPMLLGLERELAVLPATGLSPS 332
           GP  F RD +CP +L +      +  TGLSPS
Sbjct: 4   GPPCFRRDSSCPAVLRIRSGGNEVSTTGLSPS 35


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 23  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 71


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 29  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 77


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 32  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 80


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 81.3 bits (199), Expect = 2e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)
 Frame = +3

Query: 315 VECCTPDGDSPVAGSTASSRSNPSSMGHAKSRVNQRGPPCKAKYS*VTD 461
           +ECCT DG+SPVA S  S RS+PSSMGH +SRVNQ+GPPCKAKYS VTD
Sbjct: 27  IECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTD 75


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 44.7 bits (104), Expect(3) = 4e-14
 Identities = 22/41 (53%), Positives = 25/41 (60%)
 Frame = -2

Query: 146 FSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYP 24
           F++QF RLTY            PKHFV  +AL RLWVPRYP
Sbjct: 308 FTQQFERLTYSGISGSMLIFNSPKHFVAYYALSRLWVPRYP 348



 Score = 43.9 bits (102), Expect(3) = 4e-14
 Identities = 19/26 (73%), Positives = 20/26 (76%)
 Frame = -2

Query: 461 IGHSGIFSLTRWSSLIHTGFCVPHAT 384
           I H  +FSL RWS LIHTGF VPHAT
Sbjct: 247 ISHPEVFSLARWSLLIHTGFHVPHAT 272



 Score = 32.0 bits (71), Expect(3) = 4e-14
 Identities = 17/36 (47%), Positives = 19/36 (52%)
 Frame = -3

Query: 367 LAVLPATGLSPSGVQHXXXXXXXXXXXXXSHNPVFT 260
           L +L ATG SPS VQH             SHNP+FT
Sbjct: 274 LVMLSATGHSPSRVQHFAASPSNTMLVLLSHNPIFT 309


>tr|Q6R9L5|Q6R9L5_MAIZE Putative uncharacterized protein orf121-a-ct
           OS=Zea mays GN=orf121-a-ct PE=4 SV=1
          Length = 121

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 36/48 (75%), Positives = 43/48 (89%)
 Frame = +3

Query: 3   QTTKGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAK 146
           Q  KGLRWIPRHPET+KGVA+DEMLRG EN++RSGDS+IG P +LPA+
Sbjct: 60  QKRKGLRWIPRHPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPAE 107


>tr|A6N1E1|A6N1E1_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 59

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 32/45 (71%), Positives = 40/45 (88%)
 Frame = +3

Query: 12  KGLRWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAK 146
           KGLRWIPR+PE +KGVA+DEMLRG E ++RSGDS+IG P +LPA+
Sbjct: 1   KGLRWIPRYPEMRKGVASDEMLRGVEIKHRSGDSQIGQPFELPAE 45


>tr|A6N034|A6N034_ORYSI Putative uncharacterized protein (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 56

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 31/42 (73%), Positives = 39/42 (92%)
 Frame = +3

Query: 21  RWIPRHPETKKGVANDEMLRGAENRYRSGDSRIG*PSKLPAK 146
           RWIPR+PET+KGVA+DEMLRG EN++RSGDS+IG P +LPA+
Sbjct: 1   RWIPRYPETRKGVASDEMLRGVENKHRSGDSQIGQPFELPAE 42


>tr|A4QMB9|A4QMB9_PINKO ORF124 OS=Pinus koraiensis PE=4 SV=1
          Length = 124

 Score = 55.8 bits (133), Expect(2) = 1e-10
 Identities = 37/72 (51%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
 Frame = -1

Query: 261 RFRLFPFHSPLLGESLLLFPPPATKMFQFAGLSLVCF*I*QAVWKVNLFGNLRIYTYFRL 82
           RFRL PF SPLL ESLLL  P ATKMFQFA LSL C  I Q +  +   G       F  
Sbjct: 45  RFRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLKGLTYSGISGSMLIFNS 104

Query: 81  PE---AFRRLPR 55
           P+   A+  LPR
Sbjct: 105 PKHFVAYHALPR 116



 Score = 33.5 bits (75), Expect(2) = 1e-10
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = -3

Query: 391 MLLGLERELAVLPATGLSPSGVQ 323
           MLLGLER+  +L ATGLSPS VQ
Sbjct: 1   MLLGLERKPMMLSATGLSPSRVQ 23



 Score = 42.0 bits (97), Expect = 0.015
 Identities = 22/47 (46%), Positives = 24/47 (51%)
 Frame = -2

Query: 161 LSASEFSRQFGRLTYXXXXXXXXXXXXPKHFVVCHALLRLWVPRYPP 21
           L+     +Q   LTY            PKHFV  HAL RLWVPRYPP
Sbjct: 78  LACPWIQQQLKGLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124