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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946779
Clone id YMU02A01NGRL0013_L16
Library
Length 287
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_L16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGAAGACCCTTTGATATCTTGATATGTTGATGCCTCTACAAGCTGCTGCTTCAGCAGAT
ATTTCTCCTAAAATTTGTTTCCTTGACTGCTGATTGATTGTGCATGCAAACCATCCTGGC
ATGCCACGTTGTACAGTAACACTGCCTTCCTGCCCTTTTTGATCTTATCTTGTACAGTAC
TCCAACATTTCATGTCCAGGCTATCTCCTGCCAATTGTAATACTCAAGCTCTTGGAATAT
GAAGATCACTTTTTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P89461
Definition sp|P89461|VP19_HHV2H Capsid assembly and DNA maturation protein OS=Human herpesvirus 2 (strain HG52)
Align length 19
Score (bit) 32.3
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946779|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_L16, 5'
         (258 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P89461|VP19_HHV2H Capsid assembly and DNA maturation protein ...    32   0.74 
sp|P22486|VP19_HHV2G Capsid assembly and DNA maturation protein ...    32   0.74 
sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinas...    32   1.3  
sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kin...    32   1.3  
sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kin...    32   1.3  
sp|P17586|VP19_HHV14 Capsid assembly and DNA maturation protein ...    31   2.2  
sp|P32888|VP19_HHV11 Capsid assembly and DNA maturation protein ...    31   2.2  

>sp|P89461|VP19_HHV2H Capsid assembly and DNA maturation protein
           OS=Human herpesvirus 2 (strain HG52) GN=ICP32 PE=3 SV=1
          Length = 466

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 103 HANHPGMPRCTVTLPSCPF 159
           H  HPG PR  VT+P+C F
Sbjct: 275 HTGHPGRPRSAVTIPACAF 293


>sp|P22486|VP19_HHV2G Capsid assembly and DNA maturation protein
           OS=Human herpesvirus 2 (strain G) GN=ICP32 PE=3 SV=1
          Length = 466

 Score = 32.3 bits (72), Expect = 0.74
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 103 HANHPGMPRCTVTLPSCPF 159
           H  HPG PR  VT+P+C F
Sbjct: 275 HTGHPGRPRSAVTIPACAF 293


>sp|Q62925|M3K1_RAT Mitogen-activated protein kinase kinase kinase 1
            OS=Rattus norvegicus GN=Map3k1 PE=1 SV=1
          Length = 1493

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 90   LIDCAC-KPSWHATLYSNTAFLPFLILSCTVLQHFMSRLSP 209
            +I+ AC KP W+A  +SN   L F I S T      S LSP
Sbjct: 1420 IIEMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSP 1460


>sp|P53349|M3K1_MOUSE Mitogen-activated protein kinase kinase kinase 1
            OS=Mus musculus GN=Map3k1 PE=1 SV=3
          Length = 1493

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 90   LIDCAC-KPSWHATLYSNTAFLPFLILSCTVLQHFMSRLSP 209
            +I+ AC KP W+A  +SN   L F I S T      S LSP
Sbjct: 1420 IIEMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSP 1460


>sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kinase 1
            OS=Homo sapiens GN=MAP3K1 PE=1 SV=4
          Length = 1512

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 90   LIDCAC-KPSWHATLYSNTAFLPFLILSCTVLQHFMSRLSP 209
            +I+ AC KP W+A  +SN   L F I S T      S LSP
Sbjct: 1439 IIEMACAKPPWNAEKHSNHLALIFKIASATTAPSIPSHLSP 1479


>sp|P17586|VP19_HHV14 Capsid assembly and DNA maturation protein
           OS=Human herpesvirus 1 (strain A44) GN=UL38 PE=3 SV=1
          Length = 465

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 HANHPGMPRCTVTLPSCPF 159
           H  HPG PR  V LP+C F
Sbjct: 274 HTGHPGRPRSAVILPACAF 292


>sp|P32888|VP19_HHV11 Capsid assembly and DNA maturation protein
           OS=Human herpesvirus 1 (strain 17) GN=UL38 PE=1 SV=1
          Length = 465

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 103 HANHPGMPRCTVTLPSCPF 159
           H  HPG PR  V LP+C F
Sbjct: 274 HTGHPGRPRSAVILPACAF 292
tr_hit_id B7T147
Definition tr|B7T147|B7T147_ACRMI Putative uncharacterized protein OS=Acropora millepora
Align length 35
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946779|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_L16, 5'
         (258 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7T147|B7T147_ACRMI Putative uncharacterized protein OS=Acrop...    34   4.2  
tr|Q0SPH5|Q0SPH5_9VIRU Putative uncharacterized protein OS=Clost...    33   7.1  

>tr|B7T147|B7T147_ACRMI Putative uncharacterized protein OS=Acropora
           millepora PE=4 SV=1
          Length = 92

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 183 GVLYKIRSKRAGRQCYCTTWHARMVCMHNQSAVKE 79
           G  +++ S+ +G QC+CT ++A   CM+  + + E
Sbjct: 58  GTCFRVPSENSGPQCHCTEYYAGFRCMYQYATIDE 92


>tr|Q0SPH5|Q0SPH5_9VIRU Putative uncharacterized protein
           OS=Clostridium phage phiSM101 GN=CPR_C0042 PE=4 SV=1
          Length = 80

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -3

Query: 205 DSLDMKCWSTVQDKIKKGRK-AVLLYNVACQDGLHAQSISSQGNK 74
           D +D+K W+ V+DK KKG     LLYN+A  + L    I+   NK
Sbjct: 15  DPIDLKIWNLVKDKKKKGTYIKFLLYNLAINNNLE-NVIAQDSNK 58