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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946800
Clone id YMU02A01NGRL0013_M15
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_M15. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AACTGTGCTCCTCGCATTCACTAACCATCTTCTGTGGAGAGGTCGACACTGAAGAGCTAT
GGCGACCATGTCTGCATCTCTGGCCGTGAGCACGCCAAGCTGCCCACCCGCAGAGCATAG
CCTCTCACAGAAAAGCTTCTCGGGCCTCAAGGCTACCACTCTATTCTCCCTCAAGTGCGG
CAATCCCCTCGCCCTCTCCTATGGCAGCCGCATCAGCGCCATGCTGGTGTGGAAGCCATA
CGACAACAAGAAGTTTGAGACTCTGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGC
AAAGCAAGTGGACTACATGGTGCGACAGAACTTTACCCCCTGCATCTAGTTCGACAACAT
TGGGAGCGTGTACCGGGAGCACTTCCACGGGAGCGGGTACTACGATGGCAGGTACTGGGT
GATGTGGAAGCTGCCCATGTTTGGCTGCACCAACTCTGCCGCCGTTCTGCGAGAGATTAC
TGAGTGCGCCTAGGAGTATCCCAAGGCCATCATCCGGGTGCTTGGCTTCTATGCCAAGCG
CCAGGTCCAGGTTGCTGGCTTCCTCGTC
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 175
Score (bit) 166.0
E-value 6.0e-41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946800|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_M15, 5'
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   166   6e-41
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   165   2e-40
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   163   5e-40
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   163   6e-40
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   162   1e-39
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   162   1e-39
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   161   2e-39
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   160   3e-39
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   160   4e-39
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   160   5e-39
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   159   9e-39
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   159   1e-38
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   159   1e-38
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   159   1e-38
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   158   2e-38
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   157   3e-38
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   156   6e-38
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   155   1e-37
sp|P07689|RBS3_PEA Ribulose bisphosphate carboxylase small chain...   155   1e-37
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   155   2e-37
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   155   2e-37
sp|P00869|RBS2_PEA Ribulose bisphosphate carboxylase small chain...   155   2e-37
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   154   3e-37
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   154   3e-37
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   154   4e-37
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   154   4e-37
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   153   5e-37
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   153   7e-37
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   152   9e-37
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   152   1e-36

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  166 bits (421), Expect = 6e-41
 Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
 Frame = +2

Query: 56  AMATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSL--KCGNPLA--LSYGSRISAM 223
           A + +S++   +     PA+ S+    F+ LK+T+ F +  K  N +    S G R+  M
Sbjct: 2   ACSMISSATVAAVSRASPAQSSMVAP-FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query: 224 LVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGY 400
            VW P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+ F+   G VYREH    GY
Sbjct: 61  QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query: 401 YDGRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFL 565
           YDGRYW MWKLPMFGC +S+ VL+E+ EC   YP A IR++GF  KRQVQ+  F+
Sbjct: 121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFI 175


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  165 bits (417), Expect = 2e-40
 Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
 Frame = +2

Query: 59  MATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSL--KCGNPLAL--SYGSRISAML 226
           MA++S+S A++T +   +  +     F+GLK+   F +  K  N  +   S G R+  M 
Sbjct: 1   MASISSS-AIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMK 59

Query: 227 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGYY 403
           VW P   KK+ETLSYLP LS E ++K++DY++R  + PC+ F+   G VYREH H  GYY
Sbjct: 60  VWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYY 119

Query: 404 DGRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           DGRYW MWKLPMFGCT+SA V++E+ EC  EYP A IRV+GF   RQVQ   F+V
Sbjct: 120 DGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIV 174


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  163 bits (413), Expect = 5e-40
 Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 5/173 (2%)
 Frame = +2

Query: 62  ATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLF--SLKCGNPLA--LSYGSRISAMLV 229
           ATM AS A +T   P          F+GLK++  F  + K  N +    S G R++ M V
Sbjct: 9   ATMVASPAQATMVAP----------FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQV 58

Query: 230 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGYYD 406
           W P   KKFETLSYLP L+  ++AK+VDY++R  + PC+ F+   G VYREH +  GYYD
Sbjct: 59  WPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYD 118

Query: 407 GRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFL 565
           GRYW MWKLP+FGCT+SA VL+E+ EC  EYP A IR++GF   RQVQ   F+
Sbjct: 119 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFI 171


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  163 bits (412), Expect = 6e-40
 Identities = 80/153 (52%), Positives = 102/153 (66%), Gaps = 8/153 (5%)
 Frame = +2

Query: 134 SFSGLKATTLF--SLKCGNPLA------LSYGSRISAMLVWKPYDNKKFETLSYLPQLSS 289
           +F+GLK+T  F  S K  N  A       S G R+  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 290 EQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHGSGYYDGRYWVMWKLPMFGCTNSAAVL 469
           EQ+ K+V+Y++R  + PC+ FD  GS+ R++    GYYDGRYWVMWKLPMFGCT ++ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 470 REITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
            E+ ECA  YPKA IRV+GF   RQVQ   F+V
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIV 167


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
          Length = 189

 Score =  162 bits (409), Expect = 1e-39
 Identities = 85/179 (47%), Positives = 115/179 (64%), Gaps = 8/179 (4%)
 Frame = +2

Query: 56  AMATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLF--SLKCGNPLA------LSYGSR 211
           A+++ +A  AV+ PS     + +S  +F+GLK+   F  S    N  A       S GSR
Sbjct: 7   ALSSTAAVAAVAAPSKTGNSNVVS--AFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSR 64

Query: 212 ISAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG 391
           +  M VW PY NKKFETLSYLP+L+ EQ+ K+V+Y+++  + PC+ F+  G + R + + 
Sbjct: 65  VRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNS 124

Query: 392 SGYYDGRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
            GYYDGRYWVMWKLPMFGCT ++ VL E+ ECA  YP A IRV+GF   RQVQ   F+V
Sbjct: 125 PGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIV 183


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  162 bits (409), Expect = 1e-39
 Identities = 83/171 (48%), Positives = 109/171 (63%), Gaps = 5/171 (2%)
 Frame = +2

Query: 68  MSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSL--KCGNPLA--LSYGSRISAMLVWK 235
           M++S+  ST        +     F+GLK++  F +  K  N +    S G R+S M VW 
Sbjct: 1   MASSMFSSTAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 236 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGYYDGR 412
           P   KKFETLSYLP LS  ++AK+VDY++R  + PC+ F+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 413 YWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFL 565
           YW MWKLP+FGCT+SA VL+E+ EC  EYP A IR++GF   RQVQ   F+
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 171


>sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1
          Length = 180

 Score =  161 bits (408), Expect = 2e-39
 Identities = 89/175 (50%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
 Frame = +2

Query: 59  MATMSASLAVSTPSCPPAEHSLSQKSF----SGLKATTLFSLKCGNPLALSYGSRISAML 226
           MA++ AS AV TP    A  +          +GLKA              + GSR+S M 
Sbjct: 1   MASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQTKTQTNGSRVSCMQ 60

Query: 227 VWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHGSGYYD 406
           VW+PY+N KFETLSYLP LS + +AKQ+DY+++  + PCI FD  G+V RE     GYYD
Sbjct: 61  VWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYD 120

Query: 407 GRYWVMWKLPMFGCTNSAAVLREITECA*EY-PKAIIRVLGFYAKRQVQVAGFLV 568
           GRYW MWKLPMFGCT+SA+VLREI EC   Y  K  IR LGF   RQVQ A F+V
Sbjct: 121 GRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIV 175


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  160 bits (406), Expect = 3e-39
 Identities = 82/172 (47%), Positives = 113/172 (65%), Gaps = 4/172 (2%)
 Frame = +2

Query: 62  ATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNP---LALSYGSRISAMLVW 232
           +++ +S AV+T S  PA+ S+    F+GLK+T  F     N       S G R+  M VW
Sbjct: 3   SSVLSSAAVATVSRTPAQASMVAP-FTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVW 61

Query: 233 KPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGYYDG 409
              + K++ETLSYLP L+++Q+A+QVDY++   + PC+ F+ + G VYREH +  GYYDG
Sbjct: 62  PTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDG 121

Query: 410 RYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFL 565
           RYW MWKLPMFGCT+ A VL E+ EC  EYP A IR++GF + RQVQ   F+
Sbjct: 122 RYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFI 173


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  160 bits (405), Expect = 4e-39
 Identities = 84/173 (48%), Positives = 114/173 (65%), Gaps = 5/173 (2%)
 Frame = +2

Query: 62  ATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSL--KCGNPLA--LSYGSRISAMLV 229
           ++M +S AV T    PA+ ++    F+GLK+++ F +  K  N +   +S G R+S M V
Sbjct: 3   SSMLSSAAVVTS---PAQATMVAP-FTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKV 58

Query: 230 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGYYD 406
           W P   KKFETLSYLP L+  ++ K+VDY++R  + PC+ F+   G VYREH    GYYD
Sbjct: 59  WPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYD 118

Query: 407 GRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFL 565
           GRYW MWKLP+FGCT+SA VL+E+ EC  EYP A IR++GF   RQVQ   F+
Sbjct: 119 GRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFI 171


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  160 bits (404), Expect = 5e-39
 Identities = 85/173 (49%), Positives = 114/173 (65%), Gaps = 5/173 (2%)
 Frame = +2

Query: 62  ATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSL--KCGNPLA--LSYGSRISAMLV 229
           ++M +S AV T    PA+ ++    F+GLK++  F +  K  N +    S G R+S M V
Sbjct: 3   SSMLSSAAVVTS---PAQATMVAP-FTGLKSSASFPVTRKANNDITSITSNGGRVSCMKV 58

Query: 230 WKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FD-NIGSVYREHFHGSGYYD 406
           W P   KKFETLSYLP L+  ++AK+VDY++R  + PC+ F+   G VYREH +  GYYD
Sbjct: 59  WPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYD 118

Query: 407 GRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFL 565
           GRYW MWKLP+FGCT+SA VL+E+ EC  EYP A IR++GF   RQVQ   F+
Sbjct: 119 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 171
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 170
Score (bit) 276.0
E-value 4.0e-73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946800|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_M15, 5'
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   276   4e-73
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   193   5e-48
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   192   1e-47
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   190   4e-47
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   190   4e-47
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   190   5e-47
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   175   1e-42
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   174   4e-42
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   173   5e-42
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   173   7e-42
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   172   9e-42
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   171   2e-41
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   170   4e-41
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   170   6e-41
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   169   8e-41
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   169   1e-40
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   168   2e-40
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   167   4e-40
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   165   1e-39
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...   165   1e-39
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...   165   1e-39
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   164   2e-39

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  276 bits (707), Expect = 4e-73
 Identities = 136/170 (80%), Positives = 149/170 (87%)
 Frame = +2

Query: 59  MATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWKP 238
           MATM A++AVS PSC  A  SLS KSFSGLKA TLF+ KC NPLA+S GSRISAMLVWKP
Sbjct: 1   MATMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKP 59

Query: 239 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHGSGYYDGRYW 418
           YDNKKFETLSYLP L+++QIAKQV+YMVR+ +TPCI FD IGSVYREHFHGSGYYDGRYW
Sbjct: 60  YDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYW 119

Query: 419 VMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           +MWKLPMFGCT+S +VLREI ECA EYP A IRVLGF AKRQVQVAGFLV
Sbjct: 120 IMWKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLV 169


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  193 bits (491), Expect = 5e-48
 Identities = 96/174 (55%), Positives = 117/174 (67%), Gaps = 3/174 (1%)
 Frame = +2

Query: 56  AMATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWK 235
           A A +S S+  +         S S K FSGLK+TTLF+ K     ++  GSR+  M VW 
Sbjct: 2   ASAVVSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWN 61

Query: 236 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG---SGYYD 406
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCI FD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 407 GRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           GRYW MWKLPMFGCT+SA VLREI EC   +P   +RVLGF +K+QVQ+ GFLV
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLV 175


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  192 bits (487), Expect = 1e-47
 Identities = 94/167 (56%), Positives = 117/167 (70%), Gaps = 3/167 (1%)
 Frame = +2

Query: 77  SLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWKPYDNKKF 256
           S+ V++ S   +  S S K+FSGLK+ TLF+ K     ++  GSR+  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 257 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG---SGYYDGRYWVMW 427
           ET SYLP LS +QIA+QVDYM++QN  PCI FD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 428 KLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           KLPMFGCT+S+ VLREI EC   YP   +RVLGF +K+QVQ+ GFLV
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLV 180


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  191 bits (486), Expect = 2e-47
 Identities = 95/167 (56%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
 Frame = +2

Query: 77  SLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWKPYDNKKF 256
           SL  +  S   +  S + K+FSGLK  TLFS K     A+  GSR+  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 257 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG---SGYYDGRYWVMW 427
           ET SYLP L+ +QIAKQVDYM++QN  PCI FD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 428 KLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           KLPMFGCT+S+ VLREI EC  ++P   +RVLGF +K+QVQ+ GFLV
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLV 180


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  190 bits (483), Expect = 4e-47
 Identities = 98/173 (56%), Positives = 118/173 (68%), Gaps = 3/173 (1%)
 Frame = +2

Query: 59  MATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWKP 238
           +A   AS  V  PS      S S K+FSGLK+ TLFS K     ++  GSR+  M VW P
Sbjct: 43  VALGGASSCVGAPS-----ESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNP 97

Query: 239 YDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG---SGYYDG 409
               KFET SYLP L+ +QIAKQVDYM++QN  PCI FD +GSV R +F G   SGYYDG
Sbjct: 98  IGQPKFETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDG 157

Query: 410 RYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           RYW MWKLPMFGCT+S+ VLREI EC  ++P   +RVLGF +K+QVQ+ GFLV
Sbjct: 158 RYWTMWKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLV 210


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  190 bits (483), Expect = 4e-47
 Identities = 95/174 (54%), Positives = 116/174 (66%), Gaps = 3/174 (1%)
 Frame = +2

Query: 56  AMATMSASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWK 235
           A A +S S+  +         S S K FSGLK+TTL + K     ++  GSR+  M VW 
Sbjct: 2   ASAVVSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWN 61

Query: 236 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG---SGYYD 406
           P    KFET SYLP L+ +QIAKQVD+M++QN  PCI FD +GSV R +F G   SGYYD
Sbjct: 62  PIGQPKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYD 121

Query: 407 GRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           GRYW MWKLPMFGCT+SA VLREI EC   +P   +RVLGF +K+QVQ+ GFLV
Sbjct: 122 GRYWTMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLV 175


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  190 bits (482), Expect = 5e-47
 Identities = 94/167 (56%), Positives = 119/167 (71%), Gaps = 3/167 (1%)
 Frame = +2

Query: 77  SLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWKPYDNKKF 256
           SLA ++P+    + S S K+FSGLK+ TLFS +     ++  GSR+  M VW P    KF
Sbjct: 14  SLAAASPAAVSRD-STSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 257 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHG---SGYYDGRYWVMW 427
           ET SYLP L+ ++IAKQVDYM++QN  PCI FD +GSV R +F G   SGYYDGRYW MW
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 428 KLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           KLPMFGCT+S+ VLREI EC  ++P   +RVLGF +K+QVQ+ GFLV
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLV 179


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  175 bits (444), Expect = 1e-42
 Identities = 91/178 (51%), Positives = 110/178 (61%), Gaps = 7/178 (3%)
 Frame = +2

Query: 56  AMATMSASLAVSTP-------SCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRI 214
           AMA++ A+  V  P       S      S S K+FSGLK+ TLFS K     ++  GSR+
Sbjct: 2   AMASIVAATTVVAPTAFAAASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRV 61

Query: 215 SAMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHGS 394
             M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+ FDN   V R +    
Sbjct: 62  QCMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSP 121

Query: 395 GYYDGRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           GYYDGRYW MWKLPMFGC +SA VLREI EC   +P   +RVLGF   +QVQ+ GFLV
Sbjct: 122 GYYDGRYWTMWKLPMFGCNDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLV 179


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  174 bits (440), Expect = 4e-42
 Identities = 88/165 (53%), Positives = 109/165 (66%)
 Frame = +2

Query: 74  ASLAVSTPSCPPAEHSLSQKSFSGLKATTLFSLKCGNPLALSYGSRISAMLVWKPYDNKK 253
           A+ A S+ +   +E S S K+FSGLK++TLFS K  +  ++  GSR+  M VW P    K
Sbjct: 14  AAFAASSSAVSTSE-STSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTK 72

Query: 254 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHGSGYYDGRYWVMWKL 433
           FET SYLP LS + IAKQVDYM++Q   PC+ FDN   V R +    GYYDGRYW MWKL
Sbjct: 73  FETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKL 132

Query: 434 PMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           PMFGC + A VLREI EC   +P   +RVLGF   +QVQ+ GFLV
Sbjct: 133 PMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLV 177


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  173 bits (439), Expect = 5e-42
 Identities = 92/177 (51%), Positives = 112/177 (63%), Gaps = 7/177 (3%)
 Frame = +2

Query: 59  MATMSASLAVSTPSC-----PPAEHSLSQ--KSFSGLKATTLFSLKCGNPLALSYGSRIS 217
           MA+  A+ AV  P+      P A  S S   K+FSGLK+ T+FS K  N  ++  GSR+ 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 218 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCI*FDNIGSVYREHFHGSG 397
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+ FDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 398 YYDGRYWVMWKLPMFGCTNSAAVLREITECA*EYPKAIIRVLGFYAKRQVQVAGFLV 568
           YYDGRYW MWKLPMFGC +SA VLREI EC   +P   +RVLGF   +QVQ+ GFLV
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLV 177