DK946804 |
Clone id |
YMU02A01NGRL0013_M19 |
Library |
YMU02 |
Length |
404 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_M19. 5' end sequence. |
Accession |
DK946804 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL574Contig1 |
Sequence |
GAAGGCGGGCACTGTTACAGCAGATCTTTCACAAGCTATTGCTGAATTCAAAGCAGGGAA AGTCGAGTATAGAACTGACAAGACTGGGATTGTGCACGTGCCTTTTGGCAAGACATCTTT CTCAGTGGAGGACCTCCTTACAAACCTCATAGCTGTAGCAAACTCTGTAGATTCGAACAA GCCGACAGGAGCCAAAGGTGTGTATTGGAAAACTGCCTTTGTATGTGCCACAATGGGGCC ATCAATCAAGGTAAATGTAACTGAGCTGCGGGAACGCAAGCTCTCATAAGTCAGAAACGA ATATAAGAATGCTCTGGTTTGCCAAAGGAAGTCTACATGAGCTCTTTGTCGATTTCGGGA GCTTGTGTTTGCCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LY66 |
Definition |
sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana |
Align length |
93 |
Score (bit) |
132.0 |
E-value |
4.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946804|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_M19, 5' (374 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=A... 132 4e-31 sp|Q8DM27|RL1_THEEB 50S ribosomal protein L1 OS=Thermosynechococ... 130 2e-30 sp|A6MVP8|RK1_RHDSA 50S ribosomal protein L1, chloroplastic OS=R... 130 2e-30 sp|Q119S7|RL1_TRIEI 50S ribosomal protein L1 OS=Trichodesmium er... 128 8e-30 sp|Q9LE95|RK1_SPIOL 50S ribosomal protein L1, chloroplastic OS=S... 128 8e-30 sp|Q2JTQ5|RL1_SYNJA 50S ribosomal protein L1 OS=Synechococcus sp... 128 1e-29 sp|B0JNQ5|RL1_MICAN 50S ribosomal protein L1 OS=Microcystis aeru... 128 1e-29 sp|Q3MA18|RL1_ANAVT 50S ribosomal protein L1 OS=Anabaena variabi... 127 1e-29 sp|Q1XDE9|RK1_PORYE 50S ribosomal protein L1, chloroplastic OS=P... 127 1e-29 sp|Q8YLJ7|RL1_ANASP 50S ribosomal protein L1 OS=Anabaena sp. (st... 127 2e-29 sp|O78413|RK1_GUITH 50S ribosomal protein L1, chloroplastic OS=G... 127 2e-29 sp|Q2JM50|RL1_SYNJB 50S ribosomal protein L1 OS=Synechococcus sp... 126 4e-29 sp|P51338|RK1_PORPU 50S ribosomal protein L1, chloroplastic OS=P... 125 8e-29 sp|B0CAD0|RL1_ACAM1 50S ribosomal protein L1 OS=Acaryochloris ma... 124 1e-28 sp|Q31QK4|RL1_SYNE7 50S ribosomal protein L1 OS=Synechococcus el... 124 1e-28 sp|Q5N3N8|RL1_SYNP6 50S ribosomal protein L1 OS=Synechococcus sp... 124 2e-28 sp|P36236|RL1_SYNY3 50S ribosomal protein L1 OS=Synechocystis sp... 122 7e-28 sp|Q7V478|RL1_PROMM 50S ribosomal protein L1 OS=Prochlorococcus ... 117 1e-26 sp|Q7VDY6|RL1_PROMA 50S ribosomal protein L1 OS=Prochlorococcus ... 117 1e-26 sp|A2CDE8|RL1_PROM3 50S ribosomal protein L1 OS=Prochlorococcus ... 117 1e-26 sp|Q0I6K8|RL1_SYNS3 50S ribosomal protein L1 OS=Synechococcus sp... 117 2e-26 sp|A5GWK1|RL1_SYNR3 50S ribosomal protein L1 OS=Synechococcus sp... 117 2e-26 sp|Q9TM00|RK1_CYACA 50S ribosomal protein L1, chloroplastic OS=C... 117 2e-26 sp|Q3AGT0|RL1_SYNSC 50S ribosomal protein L1 OS=Synechococcus sp... 116 4e-26 sp|A5GPD4|RL1_SYNPW 50S ribosomal protein L1 OS=Synechococcus sp... 116 4e-26 sp|Q7NK78|RL1_GLOVI 50S ribosomal protein L1 OS=Gloeobacter viol... 116 4e-26 sp|Q7U3T7|RL1_SYNPX 50S ribosomal protein L1 OS=Synechococcus sp... 115 5e-26 sp|Q46HH0|RL1_PROMT 50S ribosomal protein L1 OS=Prochlorococcus ... 115 5e-26 sp|A2BUI0|RL1_PROM5 50S ribosomal protein L1 OS=Prochlorococcus ... 115 5e-26 sp|A2C033|RL1_PROM1 50S ribosomal protein L1 OS=Prochlorococcus ... 115 5e-26
>sp|Q9LY66|RK1_ARATH 50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1 Length = 346
Score = 132 bits (333), Expect = 4e-31 Identities = 60/93 (64%), Positives = 77/93 (82%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 KAGTVTA++ QAI EFK GKVE+R DKTGIVH+PFGK +F+ EDLL N +A SV++NK Sbjct: 249 KAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVETNK 308
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERK 280 P GAKGVYWK+A +C++MGPSIK+N+ E+ + K Sbjct: 309 PKGAKGVYWKSAHICSSMGPSIKLNIREMIDFK 341
>sp|Q8DM27|RL1_THEEB 50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1 Length = 237
Score = 130 bits (328), Expect = 2e-30 Identities = 63/95 (66%), Positives = 77/95 (81%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 KAGTVT DL QAI EFKAGKVE+R D++GIVHV FGK SFS EDLL NL A+ S+D N+ Sbjct: 140 KAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESIDRNR 199
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKLS 286 P+GAKG YW++ +V ATMGPSI+V++ LRE KL+ Sbjct: 200 PSGAKGRYWRSVYVAATMGPSIQVDINALRELKLA 234
>sp|A6MVP8|RK1_RHDSA 50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1 Length = 234
Score = 130 bits (328), Expect = 2e-30 Identities = 58/95 (61%), Positives = 78/95 (82%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 K+GTVTAD+ +AI EFK GK+EYR DK+GIVH+ FGKT FSVEDLL NL AV S+D N+ Sbjct: 140 KSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESIDKNR 199
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKLS 286 P+G KG YWK+ ++C+TMGPSI+++++E R++ S Sbjct: 200 PSGVKGRYWKSFYICSTMGPSIQLDISEFRDKVFS 234
>sp|Q119S7|RL1_TRIEI 50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1 Length = 238
Score = 128 bits (322), Expect = 8e-30 Identities = 61/95 (64%), Positives = 79/95 (83%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 K GTVT DL++AI EFKAGK+E+R D++GIVHV FGKTSFSVEDLL NL A+ +D N+ Sbjct: 141 KGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNR 200
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKLS 286 P+GAKG YW+T FV ATMGPSI+++V+ L++ KL+ Sbjct: 201 PSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKLT 235
>sp|Q9LE95|RK1_SPIOL 50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1 Length = 352
Score = 128 bits (322), Expect = 8e-30 Identities = 58/93 (62%), Positives = 76/93 (81%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 KAGTVT +++QA+ EFK GKVE+R DKTGIVH+PFGK +F EDLL NL A SV++NK Sbjct: 255 KAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVETNK 314
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERK 280 PTGAKGVYWK+A + ++MGPSI++N+ E+ + K Sbjct: 315 PTGAKGVYWKSAHISSSMGPSIRLNIREMLDYK 347
>sp|Q2JTQ5|RL1_SYNJA 50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1 Length = 236
Score = 128 bits (321), Expect = 1e-29 Identities = 63/94 (67%), Positives = 72/94 (76%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 K GTVT DL+QAI EFKAGK+EYR DKTGIVH+ FGK F VE LL NL AV S+D N+ Sbjct: 141 KGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNR 200
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKL 283 P GAKG YW+ VCATMGPSI+V++ LRE KL Sbjct: 201 PPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234
>sp|B0JNQ5|RL1_MICAN 50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1 Length = 237
Score = 128 bits (321), Expect = 1e-29 Identities = 60/95 (63%), Positives = 78/95 (82%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 K GTVT DL+ AIAEFKAGK+E+R D+TGIVHV FGK SFS EDLL NL A+ +VD N+ Sbjct: 141 KGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVDRNR 200
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKLS 286 P+GAKG YW+T +V ++MGPSI+V+++ LR+ KL+ Sbjct: 201 PSGAKGRYWRTVYVSSSMGPSIQVDISALRDLKLA 235
>sp|Q3MA18|RL1_ANAVT 50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1 Length = 238
Score = 127 bits (320), Expect = 1e-29 Identities = 60/95 (63%), Positives = 77/95 (81%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 K GTVT D++ AIAEFKAGK+E+R D+TGIVHV FGK SFS EDLL NL A+ ++D N+ Sbjct: 141 KGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNR 200
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKLS 286 P+GAKG YW+T +V ATMGPSI+V++ LR+ KL+ Sbjct: 201 PSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLT 235
>sp|Q1XDE9|RK1_PORYE 50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1 Length = 229
Score = 127 bits (320), Expect = 1e-29 Identities = 57/89 (64%), Positives = 74/89 (83%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 KAGTVT D+++A+ EFK GKVEYR D+TGI+HVPFGK+SFS EDL+ NL + S+D NK Sbjct: 140 KAGTVTLDVAKAVNEFKGGKVEYRVDRTGIIHVPFGKSSFSQEDLVLNLQTIKESIDRNK 199
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTEL 268 P+GAKG YWKT F+ +TMGPSI++++T L Sbjct: 200 PSGAKGKYWKTFFLSSTMGPSIQIDITSL 228
>sp|Q8YLJ7|RL1_ANASP 50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1 Length = 238
Score = 127 bits (319), Expect = 2e-29 Identities = 60/95 (63%), Positives = 77/95 (81%) Frame = +2
Query: 2 KAGTVTADLSQAIAEFKAGKVEYRTDKTGIVHVPFGKTSFSVEDLLTNLIAVANSVDSNK 181 K GTVT D++ AIAEFKAGK+E+R D+TGIVHV FGK SFS EDLL NL A+ ++D N+ Sbjct: 141 KGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETIDRNR 200
Query: 182 PTGAKGVYWKTAFVCATMGPSIKVNVTELRERKLS 286 P+GAKG YW+T +V ATMGPSI+V++ LR+ KL+ Sbjct: 201 PSGAKGRYWRTFYVSATMGPSIRVDINALRDYKLT 235
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SYG8 |
Definition |
tr|A9SYG8|A9SYG8_PHYPA Ribosomal protein L1 (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
93 |
Score (bit) |
149.0 |
E-value |
7.0e-35 |
Report |
|