DK946806
Clone id YMU02A01NGRL0013_M21
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_M21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAATGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAAGATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGAGATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 31.2
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946806|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_M21, 5'
(466 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 31 2.3
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 30 5.2
sp|Q8Y577|SYW_LISMO Tryptophanyl-tRNA synthetase OS=Listeria mon... 29 8.9
sp|Q71XG7|SYW_LISMF Tryptophanyl-tRNA synthetase OS=Listeria mon... 29 8.9
sp|Q929H5|SYW_LISIN Tryptophanyl-tRNA synthetase OS=Listeria inn... 29 8.9

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
Length = 455

Score = 31.2 bits (69), Expect = 2.3
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Frame = +1

Query: 247 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGINKSGFVKIIE 393
L+ T+ +++KE+N+W+++ D + RI ++ K GIN SGF+ ++E
Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
burgdorferi GN=recB PE=3 SV=1
Length = 1169

Score = 30.0 bits (66), Expect = 5.2
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1

Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFV 381
IVL+ + + LI+ +I EKNLW+ + + +TK Q+I K IN G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674


>sp|Q8Y577|SYW_LISMO Tryptophanyl-tRNA synthetase OS=Listeria
monocytogenes GN=trpS PE=3 SV=1
Length = 331

Score = 29.3 bits (64), Expect = 8.9
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2

Query: 251 FLL-PGR*IKKKIYG*TSKIADSSSLNLRE*IWERKLE*INPGLSRLLNIYLVERDPSFQ 427
FLL P I+KKI S + DSS + I K E PG+S LL IY V +
Sbjct: 206 FLLDPPATIRKKI---KSAVTDSSGI-----IEYNKEE--KPGVSNLLTIYSVITGETIA 255

Query: 428 QLGERYFPKGF 460
+ E+Y KG+
Sbjct: 256 SIEEKYVGKGY 266


>sp|Q71XG7|SYW_LISMF Tryptophanyl-tRNA synthetase OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=trpS PE=3
SV=1
Length = 331

Score = 29.3 bits (64), Expect = 8.9
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2

Query: 251 FLL-PGR*IKKKIYG*TSKIADSSSLNLRE*IWERKLE*INPGLSRLLNIYLVERDPSFQ 427
FLL P I+KKI S + DSS + I K E PG+S LL IY V +
Sbjct: 206 FLLDPPATIRKKI---KSAVTDSSGI-----IEYNKEE--KPGVSNLLTIYSVITGETIS 255

Query: 428 QLGERYFPKGF 460
+ E+Y KG+
Sbjct: 256 TIEEKYVGKGY 266


>sp|Q929H5|SYW_LISIN Tryptophanyl-tRNA synthetase OS=Listeria
innocua GN=trpS PE=3 SV=1
Length = 331

Score = 29.3 bits (64), Expect = 8.9
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2

Query: 251 FLL-PGR*IKKKIYG*TSKIADSSSLNLRE*IWERKLE*INPGLSRLLNIYLVERDPSFQ 427
FLL P I+KKI S + DSS + I K E PG+S LL IY V +
Sbjct: 206 FLLDPPATIRKKI---KSAVTDSSGI-----IEYNKEE--KPGVSNLLTIYSVITGETIA 255

Query: 428 QLGERYFPKGF 460
+ E+Y KG+
Sbjct: 256 NIEEKYVGKGY 266


tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946806|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_M21, 5'
(466 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.8
tr|B7GLZ1|B7GLZ1_9BACI Tryptophanyl-tRNA synthetase OS=Anoxybaci... 33 7.2
tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein OS=Dicty... 33 9.4

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
Length = 319

Score = 35.0 bits (79), Expect = 1.8
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
LK +++E+D ST + ++++F A +F+L VNL + R++ Q C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283


>tr|B7GLZ1|B7GLZ1_9BACI Tryptophanyl-tRNA synthetase
OS=Anoxybacillus flavithermus WK1 GN=trpS PE=4 SV=1
Length = 329

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2

Query: 371 PGLSRLLNIYLVERDPSFQQLGERYFPKGF 460
PG+S LL IY + + S +QL ERY KG+
Sbjct: 236 PGVSNLLTIYSILANESIEQLEERYAGKGY 265


>tr|Q54CB7|Q54CB7_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0191758 PE=4 SV=1
Length = 955

Score = 32.7 bits (73), Expect = 9.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1

Query: 238 ILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGINKSGFVKIIEHLF 402
I+G ++ SGE+N E ++ DS +T IN+GK IN S + I F
Sbjct: 745 IIGTLNVSGELNSENGQFIFTLDS---LTNSTFINIGKNATINNSTLIIRINQYF 796