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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946808
Clone id YMU02A01NGRL0013_M23
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_M23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GACCAGAAGTGGGAACAGTCGAGTCGAACTTCGAAGGCGAGAAAGGTCGTGAGAAGCCTT
GGGCGCTGTTGCTGCTGCTCCTTCCTCTTGCGGCTCCGCGCTTGCTGCTTCAGCATCTTC
TTCCTCTTCCTCACGCCGATTTTGTGTCGGGCGATCGCTGAGGGTGCCTTCTTACTCATG
GACTGGTCGATTTGCTCCTCTCTCTGTTCGAGCCACTACCTCGACCGAGGAGCCTGCTAC
CACCACCACTACCTCTACTCCCACTGTGTCCATAACTTCAACCACTGAAGATACATCTCT
GCAGACGGACGAACTCATTGCGGACTTGAAAGCCTAGTGTGATGCTATTGAGATCAAGAC
AAATGTTTTGATTTATGGAGGAGGTGCCCTGGTCGCGTTGTGGTTTTCGTCAA
■■Homology search results ■■ -
sp_hit_id O04616
Definition sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana
Align length 33
Score (bit) 41.6
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946808|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_M23, 5'
         (398 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150, chlorop...    42   0.001
sp|Q4V887|S39A6_RAT Zinc transporter ZIP6 OS=Rattus norvegicus G...    30   3.7  
sp|Q5R9M9|S39A6_PONAB Zinc transporter ZIP6 OS=Pongo abelii GN=S...    30   3.7  
sp|Q8C145|S39A6_MOUSE Zinc transporter ZIP6 OS=Mus musculus GN=S...    30   3.7  
sp|Q13433|S39A6_HUMAN Zinc transporter ZIP6 OS=Homo sapiens GN=S...    30   3.7  

>sp|O04616|Y4115_ARATH Uncharacterized protein At4g01150,
           chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1
           SV=1
          Length = 164

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 299 LQTDELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           + T+ELI DLK   D +E K+ VLIYGGGA+VA
Sbjct: 71  IDTNELITDLKEKWDGLENKSTVLIYGGGAIVA 103


>sp|Q4V887|S39A6_RAT Zinc transporter ZIP6 OS=Rattus norvegicus
           GN=Slc39a6 PE=2 SV=1
          Length = 741

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 193 CSSLCSSHYLDR----GACYHHHYLYSHCVHNFNH 285
           C + C SH+ D         HHH+ Y H +H+ +H
Sbjct: 522 CKNKCHSHFHDTLGQSDDLIHHHHDYHHILHHHHH 556


>sp|Q5R9M9|S39A6_PONAB Zinc transporter ZIP6 OS=Pongo abelii
           GN=SLC39A6 PE=2 SV=1
          Length = 743

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 193 CSSLCSSHYLDR----GACYHHHYLYSHCVHNFNH 285
           C + C SH+ D         HHH+ Y H +H+ +H
Sbjct: 524 CKNKCHSHFHDTLGQSDDLIHHHHDYHHILHHHHH 558


>sp|Q8C145|S39A6_MOUSE Zinc transporter ZIP6 OS=Mus musculus
           GN=Slc39a6 PE=2 SV=1
          Length = 765

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 193 CSSLCSSHYLDR----GACYHHHYLYSHCVHNFNH 285
           C + C SH+ D         HHH+ Y H +H+ +H
Sbjct: 546 CKNKCHSHFHDTLGQSDDLIHHHHDYHHILHHHHH 580


>sp|Q13433|S39A6_HUMAN Zinc transporter ZIP6 OS=Homo sapiens
           GN=SLC39A6 PE=1 SV=2
          Length = 749

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +1

Query: 193 CSSLCSSHYLDR----GACYHHHYLYSHCVHNFNH 285
           C + C SH+ D         HHH+ Y H +H+ +H
Sbjct: 530 CKNKCHSHFHDTLGQSDDLIHHHHDYHHILHHHHH 564
tr_hit_id B6TCN7
Definition tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays
Align length 30
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946808|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_M23, 5'
         (398 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays PE=2 ...    42   0.012
tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.012
tr|A7PZR1|A7PZR1_VITVI Chromosome chr15 scaffold_40, whole genom...    42   0.012
tr|B4YYA4|B4YYA4_THEHA ST6-40 OS=Thellungiella halophila PE=2 SV=1     42   0.020
tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.020
tr|B3H429|B3H429_ARATH Uncharacterized protein At4g01150.2 OS=Ar...    42   0.020
tr|B7FGQ4|B7FGQ4_MEDTR Putative uncharacterized protein OS=Medic...    41   0.034
tr|A9NP27|A9NP27_PICSI Putative uncharacterized protein OS=Picea...    40   0.044
tr|A2X996|A2X996_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.058
tr|Q6Z2L1|Q6Z2L1_ORYSJ Putative uncharacterized protein P0643A10...    40   0.075
tr|Q0DXV3|Q0DXV3_ORYSJ Os02g0731600 protein (Fragment) OS=Oryza ...    40   0.075
tr|A3AB17|A3AB17_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.075
tr|Q6ZKB9|Q6ZKB9_ORYSJ Os08g0430600 protein OS=Oryza sativa subs...    39   0.098
tr|A2YVG4|A2YVG4_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.098
tr|Q5Z6P4|Q5Z6P4_ORYSJ Os06g0264800 protein OS=Oryza sativa subs...    39   0.17 
tr|A2YBH2|A2YBH2_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|A9PH76|A9PH76_POPTR Putative uncharacterized protein OS=Popul...    38   0.29 
tr|A9NNZ7|A9NNZ7_PICSI Putative uncharacterized protein OS=Picea...    38   0.29 
tr|A9S558|A9S558_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   1.4  
tr|A5AEL3|A5AEL3_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|B6TQX5|B6TQX5_MAIZE Threonine endopeptidase OS=Zea mays PE=4 ...    33   7.0  
tr|B6SNJ7|B6SNJ7_MAIZE Threonine endopeptidase OS=Zea mays PE=2 ...    33   7.0  
tr|A9TE40|A9TE40_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.0  
tr|A9NN45|A9NN45_PICSI Putative uncharacterized protein OS=Picea...    33   9.2  

>tr|B6TCN7|B6TCN7_MAIZE Threonine endopeptidase OS=Zea mays PE=2
           SV=1
          Length = 148

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +2

Query: 308 DELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           DELI DLKA  DA+E K  VL+YGGGA+VA
Sbjct: 58  DELIEDLKAKWDAVEDKPTVLLYGGGAVVA 87


>tr|B4FTJ9|B4FTJ9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 150

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +2

Query: 308 DELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           DELI DLKA  DA+E K  VL+YGGGA+VA
Sbjct: 59  DELIEDLKAKWDAVEDKPTVLLYGGGAVVA 88


>tr|A7PZR1|A7PZR1_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026973001
           PE=4 SV=1
          Length = 166

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 299 LQTDELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           L T+EL  DLKA  DA+E K+ V +YGGGA+VA
Sbjct: 73  LNTEELFTDLKAKWDALENKSTVFLYGGGAIVA 105


>tr|B4YYA4|B4YYA4_THEHA ST6-40 OS=Thellungiella halophila PE=2 SV=1
          Length = 169

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 299 LQTDELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           + T+ELI DLK   D +E K+ VLIYGGGA+VA
Sbjct: 76  IDTNELITDLKEKWDGLENKSTVLIYGGGAIVA 108


>tr|B4FR11|B4FR11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 157

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = +2

Query: 308 DELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           DELIADLKA  DA+E K+ VL Y GGA+VA
Sbjct: 67  DELIADLKAKWDAVENKSTVLTYAGGAVVA 96


>tr|B3H429|B3H429_ARATH Uncharacterized protein At4g01150.2
           OS=Arabidopsis thaliana GN=At4g01150 PE=4 SV=1
          Length = 125

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +2

Query: 299 LQTDELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           + T+ELI DLK   D +E K+ VLIYGGGA+VA
Sbjct: 71  IDTNELITDLKEKWDGLENKSTVLIYGGGAIVA 103


>tr|B7FGQ4|B7FGQ4_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 161

 Score = 40.8 bits (94), Expect = 0.034
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +2

Query: 299 LQTDELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           L T+EL  DLK   DA+E K+ VL+YGGG LVA
Sbjct: 68  LDTNELFTDLKEKWDALENKSTVLLYGGGGLVA 100


>tr|A9NP27|A9NP27_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 171

 Score = 40.4 bits (93), Expect = 0.044
 Identities = 19/33 (57%), Positives = 26/33 (78%)
 Frame = +2

Query: 299 LQTDELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           +QT+E++ +LK   DA+E K  VLIYGGGAL+A
Sbjct: 74  VQTEEVLTNLKEKWDAVENKPTVLIYGGGALLA 106


>tr|A2X996|A2X996_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08812 PE=4 SV=1
          Length = 159

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +2

Query: 308 DELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           DELI DLKA  DA+E K+ VL Y GGA+VA
Sbjct: 69  DELIEDLKAKWDAVENKSTVLTYAGGAIVA 98


>tr|Q6Z2L1|Q6Z2L1_ORYSJ Putative uncharacterized protein P0643A10.1
           (Putative uncharacterized protein P0617A09.29) OS=Oryza
           sativa subsp. japonica GN=P0643A10.1 PE=4 SV=1
          Length = 159

 Score = 39.7 bits (91), Expect = 0.075
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +2

Query: 308 DELIADLKA*CDAIEIKTNVLIYGGGALVA 397
           DELI DLKA  DA+E K+ VL Y GGA++A
Sbjct: 69  DELIEDLKAKWDAVENKSTVLTYAGGAIIA 98