DK946820
Clone id YMU02A01NGRL0013_N12
Library
Length 297
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_N12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAACTATTTACAAATATAGATCTACGTCTTCCTCTTTCCAACATATTTACAGTTTTCGTC
TCTCTACAAGAAGTGGGAAACAAAGTAAGGGGGATACTATGGATAAATTAAAAAATCAAG
TAATTACTGGAAAGTCTATTCGTTTATTGCAACAGAATCAATATACTTTCCAAGTGGATT
TGAAACTAACTAAAACTGGAATGAAAGATTGGATCGAACGATTTTTTGACGTCAAGGTGG
AAGGTATAAATAGTAGTCGAATGACAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q85FI0
Definition sp|Q85FI0|RK23_ADICA 50S ribosomal protein L23, chloroplastic OS=Adiantum capillus-veneris
Align length 57
Score (bit) 115.0
E-value 5.0e-26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946820|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_N12, 5'
(269 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q85FI0|RK23_ADICA 50S ribosomal protein L23, chloroplastic OS... 115 5e-26
sp|Q8WHY0|RK23_PSINU 50S ribosomal protein L23, chloroplastic OS... 85 1e-16
sp|Q85WY6|RK23_PINKO 50S ribosomal protein L23, chloroplastic OS... 72 1e-12
sp|O62961|RK23_PICAB 50S ribosomal protein L23, chloroplastic OS... 72 1e-12
sp|P52772|RK23_PINTH 50S ribosomal protein L23, chloroplastic OS... 69 6e-12
sp|Q5SD14|RK23_HUPLU 50S ribosomal protein L23, chloroplastic OS... 68 2e-11
sp|O98451|RK23_SPIMX 50S ribosomal protein L23, chloroplastic OS... 67 3e-11
sp|Q8M9U6|RK23_CHAGL 50S ribosomal protein L23, chloroplastic OS... 67 3e-11
sp|Q85BJ7|RK23_ANTFO 50S ribosomal protein L23, chloroplastic OS... 67 3e-11
sp|Q6YXK5|RK23_PHYPA 50S ribosomal protein L23, chloroplastic OS... 66 6e-11
sp|Q32RV8|RK23_STAPU 50S ribosomal protein L23, chloroplastic OS... 64 2e-10
sp|P69667|RK23_WHEAT 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|Q6ENR9|RK23_SACOF 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|Q6L3C0|RK23_SACHY 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|P0C451|RK23_ORYSJ 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|P0C450|RK23_ORYSI 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|P0C449|RK23_ORYSA 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|Q6ENC8|RK23_ORYNI 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|P09387|RK23_MAIZE 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|P69668|RK23_HORVU 50S ribosomal protein L23, chloroplastic OS... 62 7e-10
sp|A1E9W7|RK23B_SORBI 50S ribosomal protein L23-B, chloroplastic... 62 7e-10
sp|A1EA51|RK23B_AGRST 50S ribosomal protein L23-B, chloroplastic... 62 7e-10
sp|Q20F14|RK23_OLTVI 50S ribosomal protein L23, chloroplastic OS... 62 9e-10
sp|Q49KT5|RK23_EUCGG 50S ribosomal protein L23, chloroplastic OS... 62 9e-10
sp|Q2PMM4|RK23_SOYBN 50S ribosomal protein L23, chloroplastic OS... 61 2e-09
sp|Q8LW11|RK23_PHAAN 50S ribosomal protein L23, chloroplastic OS... 61 2e-09
sp|P06390|RK23_MARPO 50S ribosomal protein L23, chloroplastic OS... 61 2e-09
sp|Q06FM2|RK23_PELHO 50S ribosomal protein L23, chloroplastic OS... 61 2e-09
sp|P61846|RK23_SINAL 50S ribosomal protein L23, chloroplastic OS... 60 3e-09
sp|A0A378|RK23_COFAR 50S ribosomal protein L23, chloroplastic OS... 60 3e-09

>sp|Q85FI0|RK23_ADICA 50S ribosomal protein L23, chloroplastic
OS=Adiantum capillus-veneris GN=rpl23 PE=2 SV=2
Length = 93

Score = 115 bits (289), Expect = 5e-26
Identities = 57/57 (100%), Positives = 57/57 (100%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRMTS 269
MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRMTS
Sbjct: 1 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRMTS 57


>sp|Q8WHY0|RK23_PSINU 50S ribosomal protein L23, chloroplastic
OS=Psilotum nudum GN=rpl23 PE=3 SV=1
Length = 90

Score = 85.1 bits (209), Expect = 1e-16
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
M+++KNQ+IT K+IRLLQ+NQYTF VD KLTKT +KDWIERFFDVKV+ INS R
Sbjct: 1 MNEIKNQIITEKTIRLLQKNQYTFNVDSKLTKTKIKDWIERFFDVKVKSINSLR 54


>sp|Q85WY6|RK23_PINKO 50S ribosomal protein L23, chloroplastic
OS=Pinus koraiensis GN=rpl23 PE=3 SV=1
Length = 91

Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/55 (61%), Positives = 44/55 (80%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD++K V+T KSIRLL++NQYTF VDL+ KT +K+WIE FFDVKV +NS R+
Sbjct: 1 MDEVKYPVLTEKSIRLLERNQYTFNVDLQSNKTKIKNWIENFFDVKVIAMNSYRL 55


>sp|O62961|RK23_PICAB 50S ribosomal protein L23, chloroplastic
OS=Picea abies GN=rpl23 PE=3 SV=1
Length = 91

Score = 71.6 bits (174), Expect = 1e-12
Identities = 35/55 (63%), Positives = 43/55 (78%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD++K V+T KSIRLL++NQYTF VD +L KT MK WIE FFDVKV +NS R+
Sbjct: 1 MDEVKYPVLTEKSIRLLERNQYTFNVDSQLNKTKMKIWIEHFFDVKVIAMNSYRL 55


>sp|P52772|RK23_PINTH 50S ribosomal protein L23, chloroplastic
OS=Pinus thunbergii GN=rpl23 PE=3 SV=1
Length = 91

Score = 69.3 bits (168), Expect = 6e-12
Identities = 33/55 (60%), Positives = 43/55 (78%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD++K V+T KSIRLL++NQYTF VD + KT +K+WIE FFDVKV +NS R+
Sbjct: 1 MDEVKYPVLTEKSIRLLERNQYTFNVDSQSNKTKIKNWIENFFDVKVIAMNSYRL 55


>sp|Q5SD14|RK23_HUPLU 50S ribosomal protein L23, chloroplastic
OS=Huperzia lucidula GN=rpl23 PE=3 SV=1
Length = 91

Score = 67.8 bits (164), Expect = 2e-11
Identities = 31/54 (57%), Positives = 42/54 (77%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
MDK+K V+T K+IRLL++ QY+F VDLK KT +K WIE+FF+V+V +NS R
Sbjct: 1 MDKVKKPVLTEKTIRLLEKKQYSFDVDLKSNKTEVKHWIEKFFNVEVRAMNSHR 54


>sp|O98451|RK23_SPIMX 50S ribosomal protein L23, chloroplastic
OS=Spirogyra maxima GN=rpl23 PE=3 SV=1
Length = 88

Score = 67.0 bits (162), Expect = 3e-11
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
MDK+K + I K+IRLL++ QYTF VD+K TKT +K WIE FF VKV G+NS R
Sbjct: 1 MDKIKYRPIGMKAIRLLERRQYTFDVDVKATKTEVKRWIEGFFSVKVVGMNSHR 54


>sp|Q8M9U6|RK23_CHAGL 50S ribosomal protein L23, chloroplastic
OS=Chaetosphaeridium globosum GN=rpl23 PE=3 SV=1
Length = 91

Score = 67.0 bits (162), Expect = 3e-11
Identities = 33/54 (61%), Positives = 41/54 (75%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
+DK+K+ ++T KSIRLLQ+NQYTFQV+ + KT K WIE FF VKV INS R
Sbjct: 2 IDKVKSPLLTEKSIRLLQKNQYTFQVNSDVNKTEFKKWIEIFFKVKVMSINSCR 55


>sp|Q85BJ7|RK23_ANTFO 50S ribosomal protein L23, chloroplastic
OS=Anthoceros formosae GN=rpl23 PE=2 SV=1
Length = 91

Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
MDK+K V+T K+IRLL++NQY F VDLK +KT +K WI+ FF VKV +NS R
Sbjct: 1 MDKVKYPVLTEKTIRLLERNQYCFDVDLKASKTEIKQWIQDFFKVKVVAMNSHR 54


>sp|Q6YXK5|RK23_PHYPA 50S ribosomal protein L23, chloroplastic
OS=Physcomitrella patens GN=rpl23 PE=3 SV=1
Length = 91

Score = 65.9 bits (159), Expect = 6e-11
Identities = 31/52 (59%), Positives = 41/52 (78%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINS 254
MD++K V+T K+IRLL++NQYTF V+ K TK +K WIE FF+VKV+ INS
Sbjct: 1 MDEIKYPVLTEKTIRLLEKNQYTFDVNKKSTKPQIKKWIENFFNVKVKAINS 52


tr_hit_id A2T376
Definition tr|A2T376|A2T376_ANGEV Ribosomal protein L23 OS=Angiopteris evecta
Align length 54
Score (bit) 77.8
E-value 2.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946820|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_N12, 5'
(269 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2T376|A2T376_ANGEV Ribosomal protein L23 OS=Angiopteris evec... 78 2e-13
tr|B7ZIS9|B7ZIS9_KETDA Ribosomal protein L23 OS=Keteleeria david... 68 2e-10
tr|B8R4C9|B8R4C9_TRISU Ribosomal protein L23 OS=Trifolium subter... 64 3e-09
tr|B0YPR8|B0YPR8_ANEMR Ribosomal protein L23 OS=Aneura mirabilis... 64 5e-09
tr|A4QKE7|A4QKE7_BARVE Ribosomal protein L23 OS=Barbarea verna G... 64 5e-09
tr|B8Y2X2|B8Y2X2_FESAR Ribosomal protein L23 OS=Festuca arundina... 62 1e-08
tr|B8ABV8|B8ABV8_ORYSI Putative uncharacterized protein OS=Oryza... 62 1e-08
tr|B3TN92|B3TN92_BRADI Ribosomal protein L23 OS=Brachypodium dis... 62 1e-08
tr|A8Y9C9|A8Y9C9_LOLPR Ribosomal protein L23 OS=Lolium perenne G... 62 1e-08
tr|A6H5M4|A6H5M4_CYCTA Ribosomal protein L23 OS=Cycas taitungens... 62 1e-08
tr|A4QJP1|A4QJP1_AETGR Ribosomal protein L23 OS=Aethionema grand... 62 2e-08
tr|A9QB41|A9QB41_9SPER Ribosomal protein L23 (Fragment) OS=Cycas... 61 2e-08
tr|A4GGF7|A4GGF7_PHAVU Ribosomal protein L23 OS=Phaseolus vulgar... 61 2e-08
tr|B1NWJ2|B1NWJ2_MANES Ribosomal protein L23 OS=Manihot esculent... 60 4e-08
tr|A4QLX5|A4QLX5_NASOF Ribosomal protein L23 OS=Nasturtium offic... 60 4e-08
tr|A4QLN6|A4QLN6_LOBMA Ribosomal protein L23 OS=Lobularia mariti... 60 4e-08
tr|A4QLE8|A4QLE8_LEPVR Ribosomal protein L23 OS=Lepidium virgini... 60 4e-08
tr|A4QL61|A4QL61_DRANE Ribosomal protein L23 OS=Draba nemorosa G... 60 4e-08
tr|A4QKX3|A4QKX3_CRUWA Ribosomal protein L23 OS=Crucihimalaya wa... 60 4e-08
tr|A4QKN4|A4QKN4_CAPBU Ribosomal protein L23 OS=Capsella bursa-p... 60 4e-08
tr|A4QK60|A4QK60_ARAHI Ribosomal protein L23 OS=Arabis hirsuta G... 60 4e-08
tr|A4QJX3|A4QJX3_OLIPU Ribosomal protein L23 OS=Olimarabidopsis ... 60 4e-08
tr|A4QJF7|A4QJF7_AETCO Ribosomal protein L23 OS=Aethionema cordi... 60 4e-08
tr|Q8S6H3|Q8S6H3_ORYSJ Putative ribosomal protein L23 from chrom... 60 5e-08
tr|B7T305|B7T305_EROTE Ribosomal protein L23 OS=Erodium texanum ... 60 5e-08
tr|A7P8F4|A7P8F4_VITVI Chromosome chr3 scaffold_8, whole genome ... 60 5e-08
tr|A7Y3J5|A7Y3J5_IPOPU Ribosomal protein L23 OS=Ipomoea purpurea... 59 1e-07
tr|A6YA72|A6YA72_9MAGN Ribosomal protein L23 OS=Saxifraga stolon... 59 2e-07
tr|A6YA65|A6YA65_RIBAM Ribosomal protein L23 OS=Ribes americanum... 59 2e-07
tr|A6YA47|A6YA47_9MAGN Ribosomal protein L23 OS=Pterostemon rotu... 59 2e-07

>tr|A2T376|A2T376_ANGEV Ribosomal protein L23 OS=Angiopteris evecta
GN=rpl23 PE=3 SV=1
Length = 91

Score = 77.8 bits (190), Expect = 2e-13
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
MD++ NQV+T K+IRLLQ NQYTF V L+ TKT +KDWIE+FFDVKV+ +NS R
Sbjct: 1 MDEINNQVLTEKTIRLLQNNQYTFDVKLESTKTEIKDWIEKFFDVKVKAMNSLR 54


>tr|B7ZIS9|B7ZIS9_KETDA Ribosomal protein L23 OS=Keteleeria
davidiana GN=rpl23 PE=4 SV=1
Length = 91

Score = 68.2 bits (165), Expect = 2e-10
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD +K V+T KSIRLL++NQYTF VD + KT +K+WIE FFDVKV +NS R+
Sbjct: 1 MDGVKYPVLTEKSIRLLERNQYTFNVDSQSNKTKIKNWIEHFFDVKVIAMNSYRL 55


>tr|B8R4C9|B8R4C9_TRISU Ribosomal protein L23 OS=Trifolium
subterraneum GN=rpl23 PE=4 SV=1
Length = 94

Score = 64.3 bits (155), Expect = 3e-09
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
M+++K V T KSIRLL +NQYTF V+ + T+T +K W+E FFDVKV +NS R+
Sbjct: 1 MNEIKYAVFTDKSIRLLAKNQYTFNVESRSTRTEIKHWVELFFDVKVIAMNSHRL 55


>tr|B0YPR8|B0YPR8_ANEMR Ribosomal protein L23 OS=Aneura mirabilis
GN=rpl23 PE=3 SV=1
Length = 91

Score = 63.5 bits (153), Expect = 5e-09
Identities = 29/55 (52%), Positives = 41/55 (74%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD+++ V+T K+IRLL++NQY+F VDL K +K W+E FF VK+ GINS R+
Sbjct: 1 MDQIRYPVLTEKTIRLLEKNQYSFDVDLGTDKKEVKKWLETFFGVKIIGINSHRL 55


>tr|A4QKE7|A4QKE7_BARVE Ribosomal protein L23 OS=Barbarea verna
GN=rpl23 PE=3 SV=1
Length = 93

Score = 63.5 bits (153), Expect = 5e-09
Identities = 31/55 (56%), Positives = 39/55 (70%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD +KN V T KSIRLL +NQYTF V+ T+T +K W+E FF VKV +NS R+
Sbjct: 1 MDGIKNAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRL 55


>tr|B8Y2X2|B8Y2X2_FESAR Ribosomal protein L23 OS=Festuca arundinacea
GN=rpl23 PE=4 SV=1
Length = 93

Score = 62.4 bits (150), Expect = 1e-08
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD +K V T KS+RLL +NQYTF V+ TKT +K W+E FF VKV +NS R+
Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRL 55


>tr|B8ABV8|B8ABV8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_02865 PE=4 SV=1
Length = 93

Score = 62.4 bits (150), Expect = 1e-08
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD +K V T KS+RLL +NQYTF V+ TKT +K W+E FF VKV +NS R+
Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRL 55


>tr|B3TN92|B3TN92_BRADI Ribosomal protein L23 OS=Brachypodium
distachyon GN=rpl23 PE=4 SV=1
Length = 93

Score = 62.4 bits (150), Expect = 1e-08
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD +K V T KS+RLL +NQYTF V+ TKT +K W+E FF VKV +NS R+
Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRL 55


>tr|A8Y9C9|A8Y9C9_LOLPR Ribosomal protein L23 OS=Lolium perenne
GN=rpl23 PE=3 SV=1
Length = 93

Score = 62.4 bits (150), Expect = 1e-08
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSRM 263
MD +K V T KS+RLL +NQYTF V+ TKT +K W+E FF VKV +NS R+
Sbjct: 1 MDGIKYAVFTEKSLRLLGKNQYTFNVESGFTKTEIKHWVELFFGVKVVAVNSHRL 55


>tr|A6H5M4|A6H5M4_CYCTA Ribosomal protein L23 OS=Cycas taitungensis
GN=rpl23 PE=3 SV=1
Length = 90

Score = 62.0 bits (149), Expect = 1e-08
Identities = 29/54 (53%), Positives = 40/54 (74%)
Frame = +3

Query: 99 MDKLKNQVITGKSIRLLQQNQYTFQVDLKLTKTGMKDWIERFFDVKVEGINSSR 260
M++++ ++T K IRLL+ NQYTF V + TKTG+K+WIE FF VKV +NS R
Sbjct: 1 MNEMEYTILTEKKIRLLENNQYTFDVGSRPTKTGVKNWIELFFGVKVIAMNSYR 54