DK946825 [AcEST]

DK946825
Clone id	YMU02A01NGRL0013_N19
Library	YMU02
Length	238
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_N19. 5' end sequence.
Accession	DK946825
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL3Contig1
Sequence	TCCAATCGTGTGAATCACCACCACTCACTATATGCTCTCTGCAGTTGTATATGCTGCCTA GTCAGTAAATTGTGAAAGGGATATGAGGTACCAAGTTTTTAATGTTATGGTAAACCTCCA TTTGTTGTATGCTGAGCAACTTGATTTGCCCATGTATCTTACATTATGGCAATCAGTTTG TGTTGGCTCTTCTGGCCTTTTCAATTGCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q8N4F7
Definition	sp\|Q8N4F7\|RN175_HUMAN RING finger protein 175 OS=Homo sapiens
Align length	36
Score (bit)	30.8
E-value	2.2
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946825\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_N19, 5' (210 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q8N4F7\|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN... 31 2.2 sp\|P49035\|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota... 30 2.9 >sp\|Q8N4F7\|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN=RNF175 PE=2 SV=1 Length = 328 Score = 30.8 bits (68), Expect = 2.2 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +2 Query: 80 DMRYQVFNVMVNLHLLYAEQLDLPMYLTLWQSVCVG 187 D++ + N H LY + LD YL WQ V +G Sbjct: 281 DLKRMISNPWERTHFLYGQILDWLRYLVAWQPVVIG 316 >sp\|P49035\|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1 Length = 808 Score = 30.4 bits (67), Expect = 2.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 104 VMVNLHLLYAEQLDLPMYLTLWQSVCVGSS 193 V VN+H L E+L +P YL + + +GSS Sbjct: 100 VRVNVHHLVVEELSVPQYLQFKEELVIGSS 129
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6KXT6
Definition	tr\|A6KXT6\|A6KXT6_BACV8 Putative outer membrane protein, probably involved in nutrient binding OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
Align length	38
Score (bit)	33.5
E-value	5.6
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK946825\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_N19, 5' (210 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6KXT6\|A6KXT6_BACV8 Putative outer membrane protein, probably... 33 5.6 tr\|B6VVB9\|B6VVB9_9BACE Putative uncharacterized protein OS=Bacte... 33 5.6 >tr\|A6KXT6\|A6KXT6_BACV8 Putative outer membrane protein, probably involved in nutrient binding OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=BVU_0540 PE=3 SV=1 Length = 1073 Score = 33.5 bits (75), Expect = 5.6 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = -1 Query: 210 AQLKRPEEPTQTDCHNVRYMGKSSCSAYNKWRFTITLK 97 A +K E+PTQ D + Y+G+ + SAY+K+ T +++ Sbjct: 580 ASVKTHEQPTQKDYQLLSYLGRINLSAYDKYLLTASVR 617 >tr\|B6VVB9\|B6VVB9_9BACE Putative uncharacterized protein OS=Bacteroides dorei DSM 17855 GN=BACDOR_01227 PE=4 SV=1 Length = 1073 Score = 33.5 bits (75), Expect = 5.6 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = -1 Query: 210 AQLKRPEEPTQTDCHNVRYMGKSSCSAYNKWRFTITLK 97 A +K E+PTQ D + Y+G+ + SAY+K+ T +++ Sbjct: 580 ASVKTHEQPTQKDYQLLSYLGRINLSAYDKYLLTASVR 617