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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946832
Clone id YMU02A01NGRL0013_O06
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_O06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGAAAGGGCAGGGACGATACGCAGCTGAGAGCAAGGGACGAAGAGTCGGTGTTGTGAGAG
AGTTGAGGGAAAATGGCGGAGGCAGCCGTGTGCGTGCCTTCTGCTTGGTCTTCCTCTGGT
CTTCTTTCTCTGCAGAGCCAATCCTTGGAGACCACCTTGAGGCAGCCCTCGATCGGCAGT
AACAGGACCTCTCTCCGCATCCATTGCGCCACGCAAGCCGCTGGTCTCCAGCCCGGCGGT
ACTCGTATAATTGGCGGCAAACGTGTCAAAGTCTTACAAATTGGGGACAAATCTGGTAAA
ATGCGTGATAAAATCATTGGTGAGCCTGCTGCAGTAAAGCTGTTGTCAAGGGTCCAACAA
CTAAGACTGCTGAGCAAAGCAGAGAAGGCGGGTCTCTTGTCAGCAGCCGAGAAAGCAGGA
TTATCCTTGTCTACCATAGAAAGGCTTGGCCTTCTTTCTAAGGCTGAAGGTCTTGGAGTC
TTATCTGCAGCAACGAACCCAAGTACCCCTGGGACTTTGTTGACGCTTGCCTTGGTTTTG
CTCGCAGGGGG
■■Homology search results ■■ -
sp_hit_id Q5E9U3
Definition sp|Q5E9U3|TMM79_BOVIN Transmembrane protein 79 OS=Bos taurus
Align length 66
Score (bit) 31.6
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946832|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_O06, 5'
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5E9U3|TMM79_BOVIN Transmembrane protein 79 OS=Bos taurus GN=...    32   2.7  
sp|P01102|FOS_MSVFB p55-v-fos-transforming protein OS=FBJ murine...    31   3.5  

>sp|Q5E9U3|TMM79_BOVIN Transmembrane protein 79 OS=Bos taurus
           GN=TMEM79 PE=2 SV=1
          Length = 395

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
 Frame = -1

Query: 239 PPGWR----------PAACVAQWMRREVLLLPIEGCLKVVSKDWLCRERRPEED------ 108
           PPGWR          P   + +    E  LLP +     V  D  C ERRP+ED      
Sbjct: 91  PPGWRNIEPEPPESEPPTKLEELPEDEASLLPEKAARAFVPIDLQCIERRPQEDLVVCCE 150

Query: 107 QAEGTH 90
            +EG H
Sbjct: 151 ASEGEH 156


>sp|P01102|FOS_MSVFB p55-v-fos-transforming protein OS=FBJ murine
           osteosarcoma virus GN=V-FOS PE=3 SV=1
          Length = 381

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
 Frame = -1

Query: 485 DKTPRPSALERRPSLSMVDKDNPAFS----AADKRPAFSALLSSLSCWTLDNSFTAA--- 327
           D  P+PS LE   S+S V+     F      A  RP+ S    S+    L  SF AA   
Sbjct: 246 DPEPKPS-LEPVKSISNVELKAEPFDDFLFPASSRPSGSETSRSVPNVDLSGSFYAADWE 304

Query: 326 ---GSPMILSRILPDLSPICKTLTRLPPIIRVPPGWRPAACVAQWMRR 192
               + + +  ++ +L P+C  +    P++R+P     A  V+   R+
Sbjct: 305 PLHSNSLGMGPMVTELEPLCTPVVTCTPLLRLPELTHAAGPVSSQRRQ 352
tr_hit_id A9NMI1
Definition tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 91
Score (bit) 83.2
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946832|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_O06, 5'
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea...    83   8e-15
tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole geno...    77   6e-13
tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Popul...    76   1e-12
tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.2...    74   5e-12
tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thali...    74   5e-12
tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subs...    73   1e-11
tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza...    73   1e-11
tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza...    73   1e-11
tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea m...    70   6e-11
tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment) OS=Physcomit...    67   5e-10
tr|A2ZE10|A2ZE10_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|Q2R4U2|Q2R4U2_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|B6TFL9|B6TFL9_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|B4FRC0|B4FRC0_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|A9TJ04|A9TJ04_PHYPA Predicted protein OS=Physcomitrella paten...    54   7e-06
tr|A9TMU4|A9TMU4_PHYPA Predicted protein OS=Physcomitrella paten...    53   9e-06
tr|A9NZ32|A9NZ32_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|A9S8Z7|A9S8Z7_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   3e-05
tr|Q2QN87|Q2QN87_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    51   4e-05
tr|B7FFF0|B7FFF0_MEDTR Putative uncharacterized protein OS=Medic...    51   5e-05
tr|A9PJV1|A9PJV1_POPJC Putative uncharacterized protein OS=Popul...    51   5e-05
tr|Q0JLN9|Q0JLN9_ORYSJ cDNA clone:J023103B06, full insert sequen...    50   8e-05
tr|A2WRV9|A2WRV9_ORYSI Putative uncharacterized protein OS=Oryza...    50   8e-05
tr|A5C347|A5C347_VITVI Putative uncharacterized protein (Chromos...    47   5e-04
tr|Q9SSF7|Q9SSF7_ARATH F25A4.30 protein OS=Arabidopsis thaliana ...    45   0.003
tr|Q94F10|Q94F10_ARATH Putative uncharacterized protein (Putativ...    45   0.003
tr|B7FKD0|B7FKD0_MEDTR Putative uncharacterized protein OS=Medic...    45   0.003
tr|Q4TH71|Q4TH71_TETNG Chromosome undetermined SCAF3173, whole g...    35   2.0  
tr|A0JMQ4|A0JMQ4_DANRE Retinoblastoma 1 OS=Danio rerio GN=rb1 PE...    35   2.0  
tr|B8PAE3|B8PAE3_9APHY Predicted protein OS=Postia placenta Mad-...    35   2.0  

>tr|A9NMI1|A9NMI1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 183

 Score = 83.2 bits (204), Expect = 8e-15
 Identities = 49/91 (53%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
 Frame = +1

Query: 244 RIIGGKR-VKVLQIGDKSGKMRDKIIGEPAAXXXXXXXXXXXXXXXAEKAGLLSAAEKAG 420
           + +GG R VKV  +GDKS  +R K     ++               AEKAGLLSAAEK+G
Sbjct: 34  KAVGGTRQVKVFPLGDKSAVLRPKNEFNGSSIKLLSRVEQLKLLSKAEKAGLLSAAEKSG 93

Query: 421 LSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           LSLS IE LGLLSKAE LG+LS+AT+P+TPG
Sbjct: 94  LSLSKIESLGLLSKAEELGILSSATDPNTPG 124


>tr|A7QI04|A7QI04_VITVI Chromosome chr17 scaffold_101, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000042001
           PE=4 SV=1
          Length = 206

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 51/108 (47%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
 Frame = +1

Query: 193 LRIHC-ATQAAGLQPGGTRIIGGKRVKVLQIGDKSGKMRDKIIGEPAAXXXXXXXXXXXX 369
           L IH  ATQ   L P    I   K   V  +G+K    R   +  P              
Sbjct: 42  LLIHSMATQKPTLPPASKTISSRKASTVFPLGEKGP--RSSPLATPPPIKLLTRVEQLKL 99

Query: 370 XXXAEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
              AEKAGLLSAAEK G SLS+IE+LGLLSKAE  G+LSAAT+P TPG
Sbjct: 100 LTKAEKAGLLSAAEKYGFSLSSIEKLGLLSKAEEFGILSAATDPGTPG 147


>tr|A9PGF4|A9PGF4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 194

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 40/45 (88%), Positives = 42/45 (93%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLLSAAEK GLSLSTIE+LGLLSKAE LGVLSAAT+P TPG
Sbjct: 91  AEKAGLLSAAEKFGLSLSTIEKLGLLSKAEELGVLSAATDPGTPG 135


>tr|Q9SD79|Q9SD79_ARATH Putative uncharacterized protein F13G24.250
           OS=Arabidopsis thaliana GN=F13G24.250 PE=4 SV=1
          Length = 158

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 38/45 (84%), Positives = 40/45 (88%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLLS AEK+G SLSTIERLGLL+KAE  GVLSAATNP TPG
Sbjct: 55  AEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPG 99


>tr|Q8VYV1|Q8VYV1_ARATH AT5g08050/F13G24_250 OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 158

 Score = 73.9 bits (180), Expect = 5e-12
 Identities = 38/45 (84%), Positives = 40/45 (88%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLLS AEK+G SLSTIERLGLL+KAE  GVLSAATNP TPG
Sbjct: 55  AEKAGLLSLAEKSGFSLSTIERLGLLTKAEEFGVLSAATNPETPG 99


>tr|Q2QN86|Q2QN86_ORYSJ Os12g0575000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0575000 PE=2 SV=1
          Length = 190

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLLSAAE+AGLSLS +ERLGLLSKAE L VLSAAT+P TPG
Sbjct: 86  AEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDPGTPG 130


>tr|B8BMN2|B8BMN2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38846 PE=4 SV=1
          Length = 190

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLLSAAE+AGLSLS +ERLGLLSKAE L VLSAAT+P TPG
Sbjct: 86  AEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDPGTPG 130


>tr|A3CIP9|A3CIP9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035171 PE=4 SV=1
          Length = 197

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 38/45 (84%), Positives = 41/45 (91%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLLSAAE+AGLSLS +ERLGLLSKAE L VLSAAT+P TPG
Sbjct: 93  AEKAGLLSAAERAGLSLSAVERLGLLSKAEELEVLSAATDPGTPG 137


>tr|B4FV96|B4FV96_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 193

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 36/45 (80%), Positives = 40/45 (88%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AE+AGLLSAAE+AGLSLS +ERLGLLSK E LG LSAAT+P TPG
Sbjct: 89  AERAGLLSAAERAGLSLSAMERLGLLSKLEELGALSAATDPGTPG 133


>tr|A9S2G0|A9S2G0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123160 PE=4 SV=1
          Length = 119

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 35/45 (77%), Positives = 37/45 (82%)
 Frame = +1

Query: 379 AEKAGLLSAAEKAGLSLSTIERLGLLSKAEGLGVLSAATNPSTPG 513
           AEKAGLL+  E  G SLS IE LGLLSKAE LGVLSAATNP+TPG
Sbjct: 16  AEKAGLLTTVENLGFSLSKIESLGLLSKAEELGVLSAATNPATPG 60