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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946837
Clone id YMU02A01NGRL0013_O12
Library
Length 315
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_O12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCAAGCGCATCCAGTACAACCGCCGTTTTGTAACTGCAGTTGTCGGTTTTGGTAAGAAGA
GGGGACCCAATTCATCAGAGAAGTAAAGCTAGCTGGTTGTAATTGCGAGCCTTGGATCGC
TATACTGATTCGTGAAGATGGATAATGATAGGGGAATTCTTGATTGAGTTAGGCTAAATT
TTGAGAGGTTATGGAAGTGGCGAAAGACCTCTTGCTGTAAACTGCGAAGACTGCCTGTAA
AAGGCTGTGATTTTCAAAGCACACTGCTGACTGCTTTTAATCTACGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P49689
Definition sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis thaliana
Align length 27
Score (bit) 55.5
E-value 8.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946837|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_O12, 5'
         (286 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis th...    55   8e-08
sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicu...    40   0.005
sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii G...    40   0.005
sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FA...    40   0.005
sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus...    40   0.005
sp|P62862|RS30_MOUSE 40S ribosomal protein S30 OS=Mus musculus G...    40   0.005
sp|P62861|RS30_HUMAN 40S ribosomal protein S30 OS=Homo sapiens G...    40   0.005
sp|P62860|RS30_CRIGR 40S ribosomal protein S30 OS=Cricetulus gri...    40   0.005
sp|P62866|RS30_BOVIN 40S ribosomal protein S30 OS=Bos taurus GN=...    40   0.005
sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 OS=Oryzias latipe...    38   0.018
sp|Q556Y1|RS30_DICDI 40S ribosomal protein S30 OS=Dictyostelium ...    34   0.26 
sp|A8MT65|YL018_HUMAN Putative zinc finger LOC440122 OS=Homo sap...    30   3.7  
sp|P54199|MPS1_YEAST Serine/threonine-protein kinase MPS1 OS=Sac...    30   3.7  
sp|P51111|HD_RAT Huntingtin OS=Rattus norvegicus GN=Htt PE=1 SV=1      29   6.3  
sp|P42859|HD_MOUSE Huntingtin OS=Mus musculus GN=Htt PE=1 SV=2         29   6.3  
sp|P42858|HD_HUMAN Huntingtin OS=Homo sapiens GN=HTT PE=1 SV=1         29   6.3  
sp|Q5U239|TM145_XENLA Transmembrane protein 145 OS=Xenopus laevi...    29   8.3  

>sp|P49689|RS30_ARATH 40S ribosomal protein S30 OS=Arabidopsis
           thaliana GN=RPS30A PE=1 SV=3
          Length = 62

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRLQHNRRFVTAVVGFGKKRGPNSSEK 62


>sp|P62864|RS30_RAT 40S ribosomal protein S30 OS=Rattus norvegicus
           GN=Fau PE=1 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P0C2F0|RS30_PONAB 40S ribosomal protein S30 OS=Pongo abelii
           GN=FAU PE=3 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P62863|RS30_PIG 40S ribosomal protein S30 OS=Sus scrofa GN=FAU
           PE=3 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P62867|RS30_MUSSI 40S ribosomal protein S30 OS=Mus spicilegus
           GN=Fau PE=3 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P62862|RS30_MOUSE 40S ribosomal protein S30 OS=Mus musculus
           GN=Fau PE=3 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P62861|RS30_HUMAN 40S ribosomal protein S30 OS=Homo sapiens
           GN=FAU PE=1 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P62860|RS30_CRIGR 40S ribosomal protein S30 OS=Cricetulus
           griseus GN=FAU PE=3 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|P62866|RS30_BOVIN 40S ribosomal protein S30 OS=Bos taurus GN=FAU
           PE=3 SV=1
          Length = 59

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +R+QYNRRFV  V  FGKK+GPN++
Sbjct: 34  RRMQYNRRFVNVVPTFGKKKGPNAN 58


>sp|Q9W6Y0|RS30_ORYLA 40S ribosomal protein S30 OS=Oryzias latipes
           GN=fau PE=3 SV=2
          Length = 59

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 16/25 (64%), Positives = 20/25 (80%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSS 77
           +RIQYNRRFV  V  FGKK+G N++
Sbjct: 34  RRIQYNRRFVNVVPTFGKKKGANAN 58
tr_hit_id Q6K853
Definition tr|Q6K853|Q6K853_ORYSJ Os06g0172600 protein OS=Oryza sativa subsp. japonica
Align length 27
Score (bit) 57.0
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946837|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_O12, 5'
         (286 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K853|Q6K853_ORYSJ Os06g0172600 protein OS=Oryza sativa subs...    57   5e-07
tr|B8AEE7|B8AEE7_ORYSI Putative uncharacterized protein OS=Oryza...    57   5e-07
tr|B6UIM8|B6UIM8_MAIZE 40S ribosomal protein S30 OS=Zea mays PE=...    57   5e-07
tr|B6SRJ3|B6SRJ3_MAIZE 40S ribosomal protein S30 OS=Zea mays PE=...    57   5e-07
tr|B6SLI1|B6SLI1_MAIZE 40S ribosomal protein S30 OS=Zea mays PE=...    57   5e-07
tr|A9RQE4|A9RQE4_PHYPA Predicted protein (Fragment) OS=Physcomit...    57   5e-07
tr|A9RQD4|A9RQD4_PHYPA Predicted protein OS=Physcomitrella paten...    57   5e-07
tr|A9P9H8|A9P9H8_POPTR Putative uncharacterized protein OS=Popul...    57   5e-07
tr|A7PED1|A7PED1_VITVI Chromosome chr11 scaffold_13, whole genom...    57   5e-07
tr|Q0WWR7|Q0WWR7_ARATH Ribosomal protein S30 homolog OS=Arabidop...    55   1e-06
tr|A9NKH6|A9NKH6_PICSI Putative uncharacterized protein OS=Picea...    54   4e-06
tr|A8JF66|A8JF66_CHLRE Ribosomal protein S30 OS=Chlamydomonas re...    47   5e-04
tr|A4S0Z9|A4S0Z9_OSTLU Ribosomal protein S30, component of cytos...    43   0.009
tr|Q4PM00|Q4PM00_IXOSC 40S ribosomal protein S30 OS=Ixodes scapu...    43   0.009
tr|B7P217|B7P217_IXOSC 40S ribosomal protein S30, putative OS=Ix...    43   0.009
tr|B3S7G8|B3S7G8_TRIAD Putative uncharacterized protein OS=Trich...    43   0.009
tr|B3M351|B3M351_DROAN GF17995 OS=Drosophila ananassae GN=GF1799...    43   0.009
tr|A2IAE2|A2IAE2_9NEOP Ubiquitin-ribosomal protein S30e fusion p...    43   0.009
tr|Q4LAX2|Q4LAX2_9COLE Ubiquitin/ribosomal protein S30e fusion p...    42   0.012
tr|B4MLP6|B4MLP6_DROWI GK16891 OS=Drosophila willistoni GN=GK168...    42   0.012
tr|B4LWJ4|B4LWJ4_DROVI GJ22957 OS=Drosophila virilis GN=GJ22957 ...    42   0.012
tr|B4K8X4|B4K8X4_DROMO GI10603 OS=Drosophila mojavensis GN=GI106...    42   0.012
tr|B4JUF4|B4JUF4_DROGR GH15894 OS=Drosophila grimshawi GN=GH1589...    42   0.012
tr|Q9VDH8|Q9VDH8_DROME Ribosomal protein S30, isoform A OS=Droso...    42   0.015
tr|Q7JYY0|Q7JYY0_DROME RH08962p (Fragment) OS=Drosophila melanog...    42   0.015
tr|Q6XHD5|Q6XHD5_DROYA GE25693 (Fragment) OS=Drosophila yakuba G...    42   0.015
tr|Q299E0|Q299E0_DROPS GA13897 OS=Drosophila pseudoobscura pseud...    42   0.015
tr|B4R1Q9|B4R1Q9_DROSI GD19380 OS=Drosophila simulans GN=GD19380...    42   0.015
tr|B4IV16|B4IV16_DROYA GE11221 OS=Drosophila yakuba GN=GE11221 P...    42   0.015
tr|B4II63|B4II63_DROSE GM23141 OS=Drosophila sechellia GN=GM2314...    42   0.015

>tr|Q6K853|Q6K853_ORYSJ Os06g0172600 protein OS=Oryza sativa subsp.
           japonica GN=OJ1548_F12.5 PE=4 SV=1
          Length = 62

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSSEK 62


>tr|B8AEE7|B8AEE7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_09334 PE=4 SV=1
          Length = 73

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 47  KRMQYNRRFVTAVVGFGKKRGPNSSEK 73


>tr|B6UIM8|B6UIM8_MAIZE 40S ribosomal protein S30 OS=Zea mays PE=4
           SV=1
          Length = 62

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSSEK 62


>tr|B6SRJ3|B6SRJ3_MAIZE 40S ribosomal protein S30 OS=Zea mays PE=4
           SV=1
          Length = 62

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSSEK 62


>tr|B6SLI1|B6SLI1_MAIZE 40S ribosomal protein S30 OS=Zea mays PE=4
           SV=1
          Length = 62

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSSEK 62


>tr|A9RQE4|A9RQE4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_118030 PE=4 SV=1
          Length = 61

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 35  KRMQYNRRFVTAVVGFGKKRGPNSSEK 61


>tr|A9RQD4|A9RQD4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_177247 PE=4 SV=1
          Length = 62

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSSEK 62


>tr|A9P9H8|A9P9H8_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 62

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRMQYNRRFVTAVVGFGKKRGPNSSEK 62


>tr|A7PED1|A7PED1_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016616001
           PE=4 SV=1
          Length = 107

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 26/27 (96%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+QYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 81  KRMQYNRRFVTAVVGFGKKRGPNSSEK 107


>tr|Q0WWR7|Q0WWR7_ARATH Ribosomal protein S30 homolog OS=Arabidopsis
           thaliana GN=At4g29390 PE=4 SV=1
          Length = 62

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 25/27 (92%), Positives = 27/27 (100%)
 Frame = +3

Query: 3   KRIQYNRRFVTAVVGFGKKRGPNSSEK 83
           KR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 36  KRLQHNRRFVTAVVGFGKKRGPNSSEK 62