DK946848 |
Clone id |
YMU02A01NGRL0013_P06 |
Library |
YMU02 |
Length |
563 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_P06. 5' end sequence. |
Accession |
DK946848 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL319Contig1 |
Sequence |
ACGGATATGGCGACCTCTCCTCTGTCCGTGGAAGTGCACAATCCCCATGGAAAATTGCGC GTCATCAGCACCAAGCCCATGCCTGGCTCCCGCTGGATTAAGCTTCTTGTCGATGCCGGG TGTCGAGTTGAGATTTGCACGGAAAAGAAGACTATTCTCAGTGTCGATGATATCAAACGT CTGATTGGAAGGAAGTGTGATGGCGTGATTGGCCAGCTCACTGAAGACTGGGGAGATGGC CTCTTTTCTTCCCTCAAAGCAGCCGGAGGCCATGCTTACAGCAACATGGCAGTTGGATAC AACAATGTTAACGTTGAGGCGGCCACACGTAACGGTGTAGCTGTAGGCAATACACCAGGG GTTCTTACCGAAACAACTGCCGAGCTTGCTGCGGCATTAACCTTAGCAGCTGCTCGACGG GTTGTTGAAGCTGATTACTTCATGCGGGCAGGAAAATATGATGGCTGGCTTCCAACTTTG TTCATCGGAAATTTGCTTAAAGGTCAGATAGTAGGCATTATTGGAGCGGGAAGGATTGGT TCTGCCTACGCAAGGATGATGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P13443 |
Definition |
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus |
Align length |
181 |
Score (bit) |
249.0 |
E-value |
7.0e-66 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946848|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0013_P06, 5' (563 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus ... 249 7e-66 sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litora... 67 6e-11 sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakara... 66 1e-10 sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus... 65 2e-10 sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikosh... 65 3e-10 sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN... 64 4e-10 sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptof... 64 5e-10 sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi G... 62 1e-09 sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUH... 58 4e-08 sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR23... 58 4e-08 sp|Q99RW8|Y2305_STAAM Putative 2-hydroxyacid dehydrogenase SAV23... 58 4e-08 sp|Q5HDQ4|Y2296_STAAC Putative 2-hydroxyacid dehydrogenase SACOL... 58 4e-08 sp|Q2FEI9|Y2254_STAA3 Putative 2-hydroxyacid dehydrogenase SAUSA... 58 4e-08 sp|Q8NV80|Y2224_STAAW Putative 2-hydroxyacid dehydrogenase MW222... 58 4e-08 sp|Q6G716|Y2196_STAAS Putative 2-hydroxyacid dehydrogenase SAS21... 58 4e-08 sp|Q2YYT9|Y2178_STAAB Putative 2-hydroxyacid dehydrogenase SAB21... 58 4e-08 sp|Q7A417|Y2098_STAAN Putative 2-hydroxyacid dehydrogenase SA209... 58 4e-08 sp|Q49ZM5|Y606_STAS1 Putative 2-hydroxyacid dehydrogenase SSP060... 57 5e-08 sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1... 57 6e-08 sp|Q8CNB8|Y1879_STAES Putative 2-hydroxyacid dehydrogenase SE_18... 57 6e-08 sp|Q4L8G4|Y752_STAHJ Putative 2-hydroxyacid dehydrogenase SH0752... 55 2e-07 sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens... 53 1e-06 sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scr... 50 6e-06 sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos t... 50 6e-06 sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reduc... 50 6e-06 sp|O94574|YGDH_SCHPO Putative 2-hydroxyacid dehydrogenase C1773.... 50 8e-06 sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus ... 50 8e-06 sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macac... 50 8e-06 sp|Q59642|LDHD_PEDAC D-lactate dehydrogenase OS=Pediococcus acid... 50 8e-06 sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan t... 50 1e-05
>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1 Length = 382
Score = 249 bits (636), Expect = 7e-66 Identities = 122/181 (67%), Positives = 138/181 (76%) Frame = +1
Query: 19 PLSVEVHNPHGKLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKC 198 P+ +EV NP+GK RV+STKPMPG+RWI LL++ CRVEICTEKKTILSV+DI LIG KC Sbjct: 4 PVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKC 63
Query: 199 DGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXX 378 DGVIGQLTEDWG+ LFS+L AGG A+SNMAVGYNNV+V AA + GVAVGNTPG Sbjct: 64 DGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETT 123
Query: 379 XXXXXXXXXXXXXXXXXXDYFMRAGKYDGWLPTLFIGNLLKGQIVGIIGAGRIGSAYARM 558 D FMRAG+YDGWLP LF+GNLLKGQ VG+IGAGRIGSAYARM Sbjct: 124 AELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
Query: 559 M 561 M Sbjct: 184 M 184
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1 Length = 331
Score = 67.0 bits (162), Expect = 6e-11 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%) Frame = +1
Query: 289 AVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-- 462 AVGY+N+++E AT+ G+ V NTPG D F+R+G++ Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKS 134
Query: 463 --GWLPTLFIGNLLKGQIVGIIGAGRIGSAYAR 555 GW P +F+G LKG+ +GI+G GRIG A A+ Sbjct: 135 EVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAK 167
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1 Length = 333
Score = 65.9 bits (159), Expect = 1e-10 Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 4/147 (2%) Frame = +1
Query: 127 VEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNN 306 VE+ E++ I +K++ R D ++ L+E +F + A +N AVGY+N Sbjct: 25 VEVWPEEREIPREVLLKKV--RDVDALVTMLSERIDSEVFDA--APRLRIVANYAVGYDN 80
Query: 307 VNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD----GWLP 474 ++VE ATR G+ V NTP D+F R+G++ W P Sbjct: 81 IDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHP 140
Query: 475 TLFIGNLLKGQIVGIIGAGRIGSAYAR 555 F+G + G+ +GI+G GRIG A AR Sbjct: 141 RWFLGYDVYGKTIGIVGFGRIGQAVAR 167
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1 Length = 336
Score = 65.1 bits (157), Expect = 2e-10 Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 4/172 (2%) Frame = +1
Query: 52 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDW 231 K +V T+ +P I +L + VE+ E++ I ++++ + D ++ L+E Sbjct: 2 KPKVFITRAIP-ENGINMLEEE-FEVEVWEEEREIPREKLLEKV--KDVDALVTMLSERI 57
Query: 232 GDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 411 +F + A +N AVGY+N++VE ATR G+ V NTP Sbjct: 58 DQEVFEN--APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLAT 115
Query: 412 XXXXXXXDYFMRAGKYD----GWLPTLFIGNLLKGQIVGIIGAGRIGSAYAR 555 D F+R+G++ W P F+G L G+ +GI+G GRIG A AR Sbjct: 116 ARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIAR 167
>sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2 Length = 334
Score = 64.7 bits (156), Expect = 3e-10 Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 4/172 (2%) Frame = +1
Query: 52 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDW 231 K +V T+ +P IK+L D VE+ ++K I +K++ ++ D ++ L+E Sbjct: 2 KPKVFITREIP-EVGIKMLEDE-FEVEVWGDEKEIPREILLKKV--KEVDALVTMLSERI 57
Query: 232 GDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 411 +F + A +N AVGY+N+++E AT+ G+ V NTP Sbjct: 58 DKEVFEN--APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115
Query: 412 XXXXXXXDYFMRAGKYD----GWLPTLFIGNLLKGQIVGIIGAGRIGSAYAR 555 D F+R+G++ W P F+G + G+ +GIIG GRIG A A+ Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK 167
>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2 Length = 335
Score = 64.3 bits (155), Expect = 4e-10 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 4/97 (4%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 + MAVG++N++VE ATR G+ V NTPG D+F+R G++ Sbjct: 73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEW 132
Query: 460 ----DGWLPTLFIGNLLKGQIVGIIGAGRIGSAYARM 558 GW P + +G L+G+ +GI+G GRIGS A + Sbjct: 133 WRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEI 169
>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1 Length = 332
Score = 63.9 bits (154), Expect = 5e-10 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 1/123 (0%) Frame = +1
Query: 190 RKCDGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXX 369 + CD ++ LT+ +F + A + AVGY+N++V+ AT+ G+ V NTPG Sbjct: 44 KDCDALVSLLTDPIDAEVFEA--APKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLT 101
Query: 370 XXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-GWLPTLFIGNLLKGQIVGIIGAGRIGSA 546 D ++R GK+ W P + +G + G+ +GI+G GRIG+A Sbjct: 102 ETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAA 161
Query: 547 YAR 555 AR Sbjct: 162 VAR 164
>sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1 Length = 335
Score = 62.4 bits (150), Expect = 1e-09 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 +N AVGY+N++VE AT+ G+ V NTPG D F R+G++ Sbjct: 73 ANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEW 132
Query: 460 D----GWLPTLFIGNLLKGQIVGIIGAGRIGSAYAR 555 W P F+G + G+ +GIIG GRIG A A+ Sbjct: 133 KKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAK 168
>sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1 Length = 317
Score = 57.8 bits (138), Expect = 4e-08 Identities = 30/92 (32%), Positives = 40/92 (43%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 +N G+NN+++E A + V NTP D R + Sbjct: 71 ANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGF 130
Query: 460 DGWLPTLFIGNLLKGQIVGIIGAGRIGSAYAR 555 DGW P F G + G+ +GIIG G IGSA AR Sbjct: 131 DGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR 162
>sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1 Length = 317
Score = 57.8 bits (138), Expect = 4e-08 Identities = 30/92 (32%), Positives = 40/92 (43%) Frame = +1
Query: 280 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 459 +N G+NN+++E A + V NTP D R + Sbjct: 71 ANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGF 130
Query: 460 DGWLPTLFIGNLLKGQIVGIIGAGRIGSAYAR 555 DGW P F G + G+ +GIIG G IGSA AR Sbjct: 131 DGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR 162
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RE03 |
Definition |
tr|A9RE03|A9RE03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
185 |
Score (bit) |
256.0 |
E-value |
6.0e-67 |
Report |
|