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NBDC - LSDB Archive
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DK946858
Clone id YMU02A01NGRL0013_P17
Library
Length 304
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_P17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGCGTCCCCGCTCAATGGCAAAGGAGCTTGCTGGCACAGTAAAGGAAATTCTCGGTACT
TGCGTTTCTGTGGGTTGCTCTGTGGATGGCAAGGATCCCAAGGATTTGCAAACAGAGATT
GATGATGGAGATGTTGAGATTCCAGAGAATTAGAATAATTAATCTCCGGTAGGTGCCTCT
CTGGAATGTAGTGCCGCTAAAGTAAGTTTTACTTTGTGGTCTGCTGCTGGGTTTTTTTTC
CCGCAAATCATTTTTGGACAATTGTCAGCTTGTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
■■Homology search results ■■ -
sp_hit_id P50883
Definition sp|P50883|RL121_ARATH 60S ribosomal protein L12-1 OS=Arabidopsis thaliana
Align length 50
Score (bit) 91.3
E-value 1.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946858|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_P17, 5'
         (274 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50883|RL121_ARATH 60S ribosomal protein L12-1 OS=Arabidopsis...    91   1e-18
sp|Q9LFH5|RL122_ARATH 60S ribosomal protein L12-2 OS=Arabidopsis...    90   3e-18
sp|Q9FF52|RL123_ARATH 60S ribosomal protein L12-3 OS=Arabidopsis...    87   3e-17
sp|O50003|RL12_PRUAR 60S ribosomal protein L12 OS=Prunus armenia...    85   1e-16
sp|O75000|RL12_SCHPO 60S ribosomal protein L12 OS=Schizosaccharo...    74   2e-13
sp|P50884|RL12_CHLRE 60S ribosomal protein L12 (Fragment) OS=Chl...    72   1e-12
sp|P61866|RL12_CAEEL 60S ribosomal protein L12 OS=Caenorhabditis...    67   4e-11
sp|P61865|RL12_CAEBR 60S ribosomal protein L12 OS=Caenorhabditis...    67   4e-11
sp|Q8SR84|RL12_ENCCU 60S ribosomal protein L12 OS=Encephalitozoo...    64   3e-10
sp|P23358|RL12_RAT 60S ribosomal protein L12 OS=Rattus norvegicu...    62   9e-10
sp|P35979|RL12_MOUSE 60S ribosomal protein L12 OS=Mus musculus G...    62   9e-10
sp|P30050|RL12_HUMAN 60S ribosomal protein L12 OS=Homo sapiens G...    62   9e-10
sp|P61284|RL12_BOVIN 60S ribosomal protein L12 OS=Bos taurus GN=...    62   9e-10
sp|Q9C285|RL12_NEUCR 60S ribosomal protein L12 OS=Neurospora cra...    60   3e-09
sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 OS=Chinchilla lan...    60   4e-09
sp|P17079|RL12_YEAST 60S ribosomal protein L12 OS=Saccharomyces ...    55   1e-07
sp|O29712|RL11_ARCFU 50S ribosomal protein L11P OS=Archaeoglobus...    54   2e-07
sp|Q54J50|RL12_DICDI 60S ribosomal protein L12 OS=Dictyostelium ...    54   2e-07
sp|Q97BN1|RL11_THEVO 50S ribosomal protein L11P OS=Thermoplasma ...    52   7e-07
sp|Q9HL70|RL11_THEAC 50S ribosomal protein L11P OS=Thermoplasma ...    51   2e-06
sp|A5UKV0|RL11_METS3 50S ribosomal protein L11P OS=Methanobrevib...    50   5e-06
sp|Q8TX52|RL11_METKA 50S ribosomal protein L11P OS=Methanopyrus ...    49   8e-06
sp|O27715|RL11_METTH 50S ribosomal protein L11P OS=Methanobacter...    49   1e-05
sp|P35025|RL11_SULAC 50S ribosomal protein L11P OS=Sulfolobus ac...    48   1e-05
sp|P54030|RL11_METJA 50S ribosomal protein L11P OS=Methanocaldoc...    48   1e-05
sp|A4YH87|RL11_METS5 50S ribosomal protein L11P OS=Metallosphaer...    48   2e-05
sp|Q2FQ31|RL11_METHJ 50S ribosomal protein L11P OS=Methanospiril...    47   2e-05
sp|Q6L1Y0|RL11_PICTO 50S ribosomal protein L11P OS=Picrophilus t...    47   3e-05
sp|Q9Y9W5|RL11_AERPE 50S ribosomal protein L11P OS=Aeropyrum per...    47   3e-05
sp|Q9V2S3|RL11_PYRAB 50S ribosomal protein L11P OS=Pyrococcus ab...    47   4e-05

>sp|P50883|RL121_ARATH 60S ribosomal protein L12-1 OS=Arabidopsis
           thaliana GN=RPL12A PE=1 SV=2
          Length = 166

 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 41/50 (82%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPEN 150
           +RPRS+AKEL+GTV+EILGTCVSVGC+VDGKDPKD+Q EI DG+VEIPEN
Sbjct: 117 MRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166


>sp|Q9LFH5|RL122_ARATH 60S ribosomal protein L12-2 OS=Arabidopsis
           thaliana GN=RPL12B PE=2 SV=1
          Length = 166

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 40/50 (80%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPEN 150
           +RPRS+AKEL+GTV+EILGTCVSVGC+VDGKDPKDLQ EI +G++EIPEN
Sbjct: 117 MRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166


>sp|Q9FF52|RL123_ARATH 60S ribosomal protein L12-3 OS=Arabidopsis
           thaliana GN=RPL12C PE=2 SV=1
          Length = 166

 Score = 87.0 bits (214), Expect = 3e-17
 Identities = 39/48 (81%), Positives = 46/48 (95%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRS+AKEL+GTVKEILGTCVSVGC+VDGKDPKDLQ EI+ GD++IP
Sbjct: 117 MRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164


>sp|O50003|RL12_PRUAR 60S ribosomal protein L12 OS=Prunus armeniaca
           GN=RPL12 PE=2 SV=1
          Length = 166

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 41/48 (85%), Positives = 44/48 (91%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           ++ RSMAKELAGTVKEIL TCVSVGC+VDGKDPKDLQ EI DGDVEIP
Sbjct: 117 MKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIP 164


>sp|O75000|RL12_SCHPO 60S ribosomal protein L12
           OS=Schizosaccharomyces pombe GN=rpl12a PE=1 SV=1
          Length = 165

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 33/49 (67%), Positives = 44/49 (89%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPE 147
           +R +S+AKEL+GTVKEILGT  SVGC+VDGK+P D+Q EID+G++EIP+
Sbjct: 116 MRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>sp|P50884|RL12_CHLRE 60S ribosomal protein L12 (Fragment)
           OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1
          Length = 157

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 33/49 (67%), Positives = 40/49 (81%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPE 147
           +RPRS AK+LA   KEILGT VSVGC VDGKDP+D+ + IDDG +EIP+
Sbjct: 108 MRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPD 156


>sp|P61866|RL12_CAEEL 60S ribosomal protein L12 OS=Caenorhabditis
           elegans GN=rpl-12 PE=2 SV=1
          Length = 165

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 30/48 (62%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRSMAK+L GTVKEILGT  SVGC++DG+ P D+   I +G++EIP
Sbjct: 116 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163


>sp|P61865|RL12_CAEBR 60S ribosomal protein L12 OS=Caenorhabditis
           briggsae GN=rpl-12 PE=3 SV=1
          Length = 165

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 30/48 (62%), Positives = 39/48 (81%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRSMAK+L GTVKEILGT  SVGC++DG+ P D+   I +G++EIP
Sbjct: 116 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163


>sp|Q8SR84|RL12_ENCCU 60S ribosomal protein L12 OS=Encephalitozoon
           cuniculi GN=RPL12 PE=3 SV=1
          Length = 166

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 26/46 (56%), Positives = 37/46 (80%)
 Frame = +1

Query: 10  RSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPE 147
           RS +  L+GTVKE+LGTC S+GC VDGK PK++  EID G++++P+
Sbjct: 120 RSYSNSLSGTVKEVLGTCKSIGCKVDGKCPKEVTREIDAGEIKLPD 165


>sp|P23358|RL12_RAT 60S ribosomal protein L12 OS=Rattus norvegicus
           GN=Rpl12 PE=2 SV=1
          Length = 165

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 28/48 (58%), Positives = 38/48 (79%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +R RS+A+EL+GT+KEILGT  SVGC+VDG+ P D+  +I+ G VE P
Sbjct: 116 MRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163
tr_hit_id B7FH91
Definition tr|B7FH91|B7FH91_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 50
Score (bit) 93.6
E-value 5.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946858|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_P17, 5'
         (274 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FH91|B7FH91_MEDTR Putative uncharacterized protein OS=Medic...    94   5e-18
tr|A9NZX9|A9NZX9_PICSI Putative uncharacterized protein OS=Picea...    93   6e-18
tr|A9NMM9|A9NMM9_PICSI Putative uncharacterized protein OS=Picea...    93   6e-18
tr|Q6RJY1|Q6RJY1_CAPAN 60S ribosomal protein L12 OS=Capsicum ann...    93   8e-18
tr|A5C9G0|A5C9G0_VITVI Putative uncharacterized protein (Chromos...    92   1e-17
tr|Q6Z8E0|Q6Z8E0_ORYSJ Os02g0699600 protein OS=Oryza sativa subs...    91   3e-17
tr|A6N0H4|A6N0H4_ORYSI 60S ribosomal protein l12 (Fragment) OS=O...    91   3e-17
tr|A2X8M1|A2X8M1_ORYSI Putative uncharacterized protein OS=Oryza...    91   3e-17
tr|B6UE28|B6UE28_MAIZE Putative uncharacterized protein OS=Zea m...    91   4e-17
tr|B6TDJ0|B6TDJ0_MAIZE 60S ribosomal protein L12 OS=Zea mays PE=...    91   4e-17
tr|B6T6G1|B6T6G1_MAIZE 60S ribosomal protein L12 OS=Zea mays PE=...    91   4e-17
tr|B6T1W9|B6T1W9_MAIZE 60S ribosomal protein L12 OS=Zea mays PE=...    91   4e-17
tr|B6T1H5|B6T1H5_MAIZE 60S ribosomal protein L12 OS=Zea mays PE=...    91   4e-17
tr|B4FRM7|B4FRM7_MAIZE 60S ribosomal protein L12 OS=Zea mays PE=...    91   4e-17
tr|A9TPE0|A9TPE0_PHYPA Predicted protein OS=Physcomitrella paten...    91   4e-17
tr|Q308B0|Q308B0_SOLTU Putative uncharacterized protein OS=Solan...    90   5e-17
tr|Q0WW72|Q0WW72_ARATH 60S ribosomal Protein L12-like OS=Arabido...    90   5e-17
tr|B4FN19|B4FN19_MAIZE Putative uncharacterized protein OS=Zea m...    90   7e-17
tr|B4FBS9|B4FBS9_MAIZE Putative uncharacterized protein OS=Zea m...    90   7e-17
tr|A9RKD8|A9RKD8_PHYPA Predicted protein OS=Physcomitrella paten...    90   7e-17
tr|A5C1K6|A5C1K6_VITVI Putative uncharacterized protein (Chromos...    90   7e-17
tr|A9SQK0|A9SQK0_PHYPA Predicted protein OS=Physcomitrella paten...    89   1e-16
tr|A9SH83|A9SH83_PHYPA Predicted protein OS=Physcomitrella paten...    88   2e-16
tr|Q7XNU2|Q7XNU2_ORYSA OSJNba0093F12.16 protein OS=Oryza sativa ...    87   3e-16
tr|Q0JAI2|Q0JAI2_ORYSJ Os04g0598200 protein OS=Oryza sativa subs...    87   3e-16
tr|A9TJ36|A9TJ36_PHYPA Predicted protein OS=Physcomitrella paten...    87   3e-16
tr|A2XX38|A2XX38_ORYSI Putative uncharacterized protein OS=Oryza...    87   3e-16
tr|A9PIS4|A9PIS4_POPJC Putative uncharacterized protein OS=Popul...    84   3e-15
tr|A9PBW0|A9PBW0_POPTR Putative uncharacterized protein OS=Popul...    84   3e-15
tr|B4FKR5|B4FKR5_MAIZE Putative uncharacterized protein OS=Zea m...    82   1e-14

>tr|B7FH91|B7FH91_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 166

 Score = 93.6 bits (231), Expect = 5e-18
 Identities = 43/50 (86%), Positives = 49/50 (98%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPEN 150
           ++PRSMAKELAGTVKEILGTCVSVGC+VDGKDPKDLQ EI+DGDVEIP++
Sbjct: 117 MKPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEINDGDVEIPQD 166


>tr|A9NZX9|A9NZX9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 166

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 42/49 (85%), Positives = 49/49 (100%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPE 147
           ++PRSMAKELAGTVKEILGTC+SVGC+VDGKDPKD+QTEID+G+VEIPE
Sbjct: 117 MKPRSMAKELAGTVKEILGTCLSVGCTVDGKDPKDVQTEIDEGEVEIPE 165


>tr|A9NMM9|A9NMM9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 127

 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 42/49 (85%), Positives = 49/49 (100%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPE 147
           ++PRSMAKELAGTVKEILGTC+SVGC+VDGKDPKD+QTEID+G+VEIPE
Sbjct: 78  MKPRSMAKELAGTVKEILGTCLSVGCTVDGKDPKDVQTEIDEGEVEIPE 126


>tr|Q6RJY1|Q6RJY1_CAPAN 60S ribosomal protein L12 OS=Capsicum annuum
           PE=2 SV=1
          Length = 166

 Score = 92.8 bits (229), Expect = 8e-18
 Identities = 43/50 (86%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPEN 150
           ++PRSMAK+L+GTVKEILGTCVSVGC+VDGKDPKDLQ EI DGDVEIPEN
Sbjct: 117 MQPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPEN 166


>tr|A5C9G0|A5C9G0_VITVI Putative uncharacterized protein (Chromosome
           chr13 scaffold_17, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00018191001 PE=3 SV=1
          Length = 166

 Score = 92.0 bits (227), Expect = 1e-17
 Identities = 42/50 (84%), Positives = 48/50 (96%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIPEN 150
           +RPRSMAK+L+GTVKEILGTCVSVGC+VDGKDPKDLQ EI DGDVE+PE+
Sbjct: 117 MRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEVPED 166


>tr|Q6Z8E0|Q6Z8E0_ORYSJ Os02g0699600 protein OS=Oryza sativa subsp.
           japonica GN=P0459B01.28 PE=2 SV=1
          Length = 166

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRSMAKE+AGTVKEILGTCVSVGC+VDGKDPKDLQ EI DG+VEIP
Sbjct: 117 MRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIP 164


>tr|A6N0H4|A6N0H4_ORYSI 60S ribosomal protein l12 (Fragment)
           OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 64

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRSMAKE+AGTVKEILGTCVSVGC+VDGKDPKDLQ EI DG+VEIP
Sbjct: 15  MRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIP 62


>tr|A2X8M1|A2X8M1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08582 PE=3 SV=1
          Length = 166

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRSMAKE+AGTVKEILGTCVSVGC+VDGKDPKDLQ EI DG+VEIP
Sbjct: 117 MRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEIP 164


>tr|B6UE28|B6UE28_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 50

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/48 (89%), Positives = 46/48 (95%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +R RSMAKELAGTVKEILGTCVSVGC+VDGKDPKDLQ EIDDG+VEIP
Sbjct: 1   MRHRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEIP 48


>tr|B6TDJ0|B6TDJ0_MAIZE 60S ribosomal protein L12 OS=Zea mays PE=2
           SV=1
          Length = 166

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 41/48 (85%), Positives = 47/48 (97%)
 Frame = +1

Query: 1   VRPRSMAKELAGTVKEILGTCVSVGCSVDGKDPKDLQTEIDDGDVEIP 144
           +RPRSMAKE++G+VKEILGTCVSVGC+VDGKDPKDLQ EIDDG+VEIP
Sbjct: 117 MRPRSMAKEMSGSVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEIP 164