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NBDC - LSDB Archive
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DK946861
Clone id YMU02A01NGRL0013_P21
Library
Length 557
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0013_P21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTCTCGCAACTCTCTGTCTTGTGCACTCGCTGATCATCTCTAGACCGGCAGTAGCAATGG
CGAGCTCTGTGGCTTCTTTGGCAGTTGCTGCTCCCTCGTGCGCCCCGGCAGAGAGCCTAT
CTAAGAGCTTCTCCGGCCTCAGGCCCACTACCCTCGCTGCCCCCAAGAGCGCCAACCCGC
TCTCCATCTCCAACGGCAGCCGCGTGAGCGCCATGCTTGTGTGGAAGCCGCATGACAACA
AGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGACAAGCGAGCAGATTGCGAAGCAGG
TGGACTTCATGGTCCGGAAGGGCTGGACCCCCTGCATTGAGTTCGACAAAATCGGAAGCG
TATACCGAGAGCACTTCCATGGCAGCGGCTACTACGATGGGCGATACTGGGTGATGTGGA
AGTTGCCCATGTTTGGCTGCCAAGATGCCGCCGCTGTGCTGCGTGAAATTGCAGAGTGCG
CCAAGGAGTACCCCGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCCGAGAGGCAGGTGC
AGGTCTCCGGCTTCCTT
■■Homology search results ■■ -
sp_hit_id O48550
Definition sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica
Align length 123
Score (bit) 177.0
E-value 2.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946861|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_P21, 5'
         (557 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   177   2e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   176   5e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   176   5e-44
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   176   7e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   176   9e-44
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   175   1e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   174   2e-43
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   174   3e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   173   4e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   173   4e-43
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   173   6e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   173   6e-43
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   172   8e-43
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   172   1e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   171   2e-42
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha...   171   2e-42
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   171   3e-42
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   171   3e-42
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   170   4e-42
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   170   4e-42
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   170   4e-42
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   170   5e-42
sp|P18566|RBS2_ORYSJ Ribulose bisphosphate carboxylase small cha...   170   5e-42
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   170   5e-42
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   169   6e-42
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   169   8e-42
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   169   8e-42

>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  177 bits (450), Expect = 2e-44
 Identities = 77/123 (62%), Positives = 94/123 (76%)
 Frame = +3

Query: 189 SNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 368
           SNG RV  M VW P   KKFETLSYLPPLT EQ+ ++VD+++R GW PCIEF K+G VYR
Sbjct: 49  SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYR 108

Query: 369 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAERQVQVS 548
           E+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K YP+ F R++GFD  RQVQ  
Sbjct: 109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCI 168

Query: 549 GFL 557
            FL
Sbjct: 169 SFL 171


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  176 bits (447), Expect = 5e-44
 Identities = 85/147 (57%), Positives = 103/147 (70%), Gaps = 4/147 (2%)
 Frame = +3

Query: 129 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAK 296
           F+GLR +    A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 297 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSGFL 557
             K YPE F+R++GFD +RQVQ   F+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFI 172


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  176 bits (447), Expect = 5e-44
 Identities = 85/147 (57%), Positives = 103/147 (70%), Gaps = 4/147 (2%)
 Frame = +3

Query: 129 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAK 296
           F+GLR +    A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 297 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSGFL 557
             K YPE F+R++GFD +RQVQ   F+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFI 172


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  176 bits (446), Expect = 7e-44
 Identities = 84/153 (54%), Positives = 106/153 (69%), Gaps = 6/153 (3%)
 Frame = +3

Query: 117 LSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTS 281
           L+  F+GL+     P T  A    + L  SNG RV  M VW P   KK+ETLSYLPPL+ 
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 282 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 458
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 459 LREIAECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           ++E+ EC KEYP AFIRV+GFD  RQVQ   F+
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFI 173


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 174

 Score =  176 bits (445), Expect = 9e-44
 Identities = 78/146 (53%), Positives = 102/146 (69%), Gaps = 3/146 (2%)
 Frame = +3

Query: 129 FSGLRPTT---LAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQ 299
           F GL+ T    ++   +A+  S+SNG R+  M VW     KKFETLSYLPPL++E + KQ
Sbjct: 16  FQGLKSTAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQ 75

Query: 300 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 479
           VD+++R  W PC+EF K+G ++REH    GYYDGRYW MWKLPMFGC DA  VL E+ E 
Sbjct: 76  VDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEV 135

Query: 480 AKEYPEAFIRVLGFDAERQVQVSGFL 557
            KEYP+A++R++GFD  RQVQ   F+
Sbjct: 136 KKEYPDAYVRIIGFDNMRQVQCVSFI 161


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  175 bits (444), Expect = 1e-43
 Identities = 84/148 (56%), Positives = 103/148 (69%), Gaps = 5/148 (3%)
 Frame = +3

Query: 129 FSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIA 293
           F+GLR     P T  A K+ + L  SNG +VS M VW P   KKFETLSYLPPL+ E +A
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 84

Query: 294 KQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ 
Sbjct: 85  KEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 144

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           E  K YPE F+R++GFD +RQVQ   F+
Sbjct: 145 EAKKAYPEYFVRIIGFDNKRQVQCISFI 172


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  174 bits (442), Expect = 2e-43
 Identities = 87/151 (57%), Positives = 108/151 (71%), Gaps = 8/151 (5%)
 Frame = +3

Query: 129 FSGLR-----PTTLAAPKSANPLSI--SNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQ 287
           F+GL+     PTT    K AN  S   SNG RV  M VW P   KK+ETLSYLPPLT  Q
Sbjct: 25  FTGLKSNAAFPTT----KKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQ 80

Query: 288 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 464
           +AK+VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 81  LAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 140

Query: 465 EIAECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           E+AEC KEYP+A+IR++GFD  RQVQ   F+
Sbjct: 141 ELAECKKEYPQAWIRIIGFDNVRQVQCIMFI 171


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  174 bits (441), Expect = 3e-43
 Identities = 83/151 (54%), Positives = 109/151 (72%), Gaps = 4/151 (2%)
 Frame = +3

Query: 117 LSKSFSGLRPTT-LAAPKSANPLS--ISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQ 287
           L+  F+GL+ +      K  N ++   SNGSRV+ M VW P   KKFETLSYLPPLT EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 288 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 464
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 465 EIAECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           E+AEC  EYPEAFIR++GFD  RQVQ   F+
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFI 171


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  174 bits (441), Expect = 3e-43
 Identities = 82/148 (55%), Positives = 106/148 (71%), Gaps = 5/148 (3%)
 Frame = +3

Query: 129 FSGLRPTTL--AAPKSANPLS--ISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAK 296
           F+GL+ +    A  K+ N ++   SNG RV+ M VW P   KKFETLSYLP LT  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 297 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC KEYP AFIR++GFD  RQVQ   F+
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFI 171


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
          Length = 177

 Score =  173 bits (439), Expect = 4e-43
 Identities = 81/136 (59%), Positives = 97/136 (71%), Gaps = 2/136 (1%)
 Frame = +3

Query: 156 AAPKSANPLSI--SNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWT 329
           A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK+VD+++R  W 
Sbjct: 37  ATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWV 96

Query: 330 PCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIR 509
           PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R
Sbjct: 97  PCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVR 156

Query: 510 VLGFDAERQVQVSGFL 557
           ++GFD +RQVQ   F+
Sbjct: 157 IIGFDNKRQVQCISFI 172
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 147
Score (bit) 273.0
E-value 3.0e-72
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946861|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0013_P21, 5'
         (557 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   273   3e-72
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   196   9e-49
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   194   2e-48
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   191   2e-47
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   190   5e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   187   3e-46
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   187   3e-46
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   180   5e-44
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   179   7e-44
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   179   7e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   178   2e-43
tr|Q9ZWG6|Q9ZWG6_HORVU Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   177   4e-43
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   176   6e-43
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   176   6e-43
tr|Q9SAW5|Q9SAW5_WHEAT Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|Q9S7N3|Q9S7N3_AEGLO Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   176   1e-42
tr|Q9SAX5|Q9SAX5_AEGSP Ribulose bisphosphate carboxylase small c...   175   1e-42
tr|Q9ZSS0|Q9ZSS0_9POAL Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|Q9SBU5|Q9SBU5_9POAL Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|Q9SAX2|Q9SAX2_9POAL Ribulose bisphosphate carboxylase small c...   175   2e-42
tr|Q9ZRS6|Q9ZRS6_SECCE Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|Q9SNZ6|Q9SNZ6_9POAL Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|Q9SAW7|Q9SAW7_TRITU Ribulose bisphosphate carboxylase small c...   174   2e-42
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   174   2e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  273 bits (699), Expect = 3e-72
 Identities = 126/147 (85%), Positives = 139/147 (94%)
 Frame = +3

Query: 117 LSKSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAK 296
           LSKSFSGL+  TL APK ANPL+ISNGSR+SAMLVWKP+DNKKFETLSYLPPLT++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 297 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 476
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 477 CAKEYPEAFIRVLGFDAERQVQVSGFL 557
           CAKEYP AFIRVLGFDA+RQVQV+GFL
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFL 168


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  196 bits (497), Expect = 9e-49
 Identities = 92/148 (62%), Positives = 111/148 (75%), Gaps = 3/148 (2%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K FSGL+ TTL+A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC + +P  ++RVLGFD+++QVQ+ GFL
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFL 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  194 bits (494), Expect = 2e-48
 Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 3/148 (2%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K FSGL+ TTL A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC + +P  ++RVLGFD+++QVQ+ GFL
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFL 174


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  191 bits (486), Expect = 2e-47
 Identities = 88/148 (59%), Positives = 111/148 (75%), Gaps = 3/148 (2%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+P TL + K+    ++ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC  ++P  ++RVLGFD+++QVQ+ GFL
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFL 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  190 bits (482), Expect = 5e-47
 Identities = 88/148 (59%), Positives = 110/148 (74%), Gaps = 3/148 (2%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+  TL + K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC  ++P  ++RVLGFD+++QVQ+ GFL
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFL 209


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  187 bits (476), Expect = 3e-46
 Identities = 87/148 (58%), Positives = 108/148 (72%), Gaps = 3/148 (2%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+  TL   KS    S+ NGSRV  M VW P    KFET SYLPPL+ +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC   YP  ++RVLGFD+++QVQ+ GFL
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFL 179


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  187 bits (475), Expect = 3e-46
 Identities = 86/148 (58%), Positives = 110/148 (74%), Gaps = 3/148 (2%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+  TL + ++    S+ NGSRV  M VW P    KFET SYLPPLT ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 473
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 474 ECAKEYPEAFIRVLGFDAERQVQVSGFL 557
           EC  ++P  ++RVLGFD+++QVQ+ GFL
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFL 178


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  180 bits (456), Expect = 5e-44
 Identities = 83/145 (57%), Positives = 103/145 (71%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+  T+ + K+ N  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 482
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 483 KEYPEAFIRVLGFDAERQVQVSGFL 557
           K +P  F+RVLGFD  +QVQ+ GFL
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFL 176


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  179 bits (455), Expect = 7e-44
 Identities = 84/145 (57%), Positives = 103/145 (71%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+ +TL + K+ +  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 482
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 483 KEYPEAFIRVLGFDAERQVQVSGFL 557
           K +P  F+RVLGFD  +QVQ+ GFL
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFL 176


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  179 bits (455), Expect = 7e-44
 Identities = 84/145 (57%), Positives = 104/145 (71%)
 Frame = +3

Query: 123 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPHDNKKFETLSYLPPLTSEQIAKQV 302
           K+FSGL+  TL + +S    S+ NGSRV+ M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 303 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 482
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 483 KEYPEAFIRVLGFDAERQVQVSGFL 557
           K +P  F+RVLGFD  +QVQ+ GFL
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFL 176