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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946867
Clone id YMU02A01NGRL0014_A06
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_A06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GATCTACTGGTTGTAGTACTTTGTGGTGATCAATTGGTCTACGGTGGACTTTTCTTTCCG
TTGGTGCTCAGATTCTAGTCCGCTCATGCTCGCCTTGGTGAATCTGGGTTTTGTGGCTTT
TTGTGGAGGCTCTCTGAGGCAGGCATCTTGCTGGTGGTAACGGCTGCGTCCTGGTCGCAC
CTTCAGGAGCTTCTGCTGGTGATGGGATGATGGGCCCCACATGTTCGGATTTTATTTCTC
CTCCTTGGCCTTTTGTTCTTCTCTAGGATTTTATCTGTCCAGGGTGGCTCCCCTGTTAGC
CATTATAACATTTTGACAATGGCTCTTAGTGATGGTAGCTTGAGGGTGTTTTCTGCATGG
GGTGACAAGCCATGTTGAATTAGTGGCAACCTCTGGTCTTTCTTGCTCAGTGGGTTATCT
TTTGATGTTTGTTGAGTATGATGGGTTGTAGTTTGTTAATCTGACTCTCTTGCTTGATAT
GAGCAGGGTCTTTTTGTAAATAGTTTGTTTTCTAATATATTACTCACAATTTGTGAGTTT
TTAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6ZU64
Definition sp|Q6ZU64|CC108_HUMAN Coiled-coil domain-containing protein 108 OS=Homo sapiens
Align length 28
Score (bit) 33.5
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946867|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_A06, 5'
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZU64|CC108_HUMAN Coiled-coil domain-containing protein 108 ...    33   0.64 
sp|P06024|VGLC_SUHVF Glycoprotein GIII OS=Suid herpesvirus 1 (st...    32   1.9  
sp|Q9QUN3|BLNK_MOUSE B-cell linker protein OS=Mus musculus GN=Bl...    32   1.9  
sp|A3CLP1|SEPF_STRSV Cell division protein sepF OS=Streptococcus...    32   2.4  
sp|A5GNJ0|IF2_SYNPW Translation initiation factor IF-2 OS=Synech...    32   2.4  
sp|O15063|K0355_HUMAN Uncharacterized protein KIAA0355 OS=Homo s...    31   4.1  
sp|Q9CCF6|Y869_MYCLE Uncharacterized protein ML0869 OS=Mycobacte...    30   5.4  
sp|Q702N8|XIRP1_HUMAN Xin actin-binding repeat-containing protei...    30   7.1  
sp|Q9H607|OCEL1_HUMAN Occludin/ELL domain-containing protein 1 O...    30   7.1  
sp|Q9SS38|GYRBP_ARATH Probable DNA gyrase subunit B, chloroplast...    30   7.1  
sp|Q9D219|BCL9_MOUSE B-cell CLL/lymphoma 9 protein OS=Mus muscul...    30   7.1  
sp|O00512|BCL9_HUMAN B-cell CLL/lymphoma 9 protein OS=Homo sapie...    30   7.1  
sp|Q8BZW2|ANR56_MOUSE Ankyrin repeat domain-containing protein 5...    30   7.1  
sp|Q8VIG0|ZCH14_MOUSE Zinc finger CCHC domain-containing protein...    30   9.2  
sp|Q9BX66|SRBS1_HUMAN Sorbin and SH3 domain-containing protein 1...    30   9.2  
sp|Q07V78|IF2_RHOP5 Translation initiation factor IF-2 OS=Rhodop...    30   9.2  
sp|Q9XI81|FUT7_ARATH Probable fucosyltransferase 7 OS=Arabidopsi...    30   9.2  
sp|Q8NUU7|FNBA_STAAW Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|Q6G6H3|FNBA_STAAS Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|Q7A3J7|FNBA_STAAN Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|Q99RD2|FNBA_STAAM Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|Q5HD51|FNBA_STAAC Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|Q2YW62|FNBA_STAAB Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|P14738|FNBA_STAA8 Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|Q2FE03|FNBA_STAA3 Fibronectin-binding protein A OS=Staphyloco...    30   9.2  
sp|A7X6I5|FNBA_STAA1 Fibronectin-binding protein A OS=Staphyloco...    30   9.2  

>sp|Q6ZU64|CC108_HUMAN Coiled-coil domain-containing protein 108
            OS=Homo sapiens GN=CCDC108 PE=2 SV=2
          Length = 1925

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = -3

Query: 267  PREEQKAKEEK*NPNMWGPSSHHQQKLL 184
            PREE +  EEK +PN WGP S  +++LL
Sbjct: 1649 PREESETSEEK-SPNKWGPVSKQKKQLL 1675


>sp|P06024|VGLC_SUHVF Glycoprotein GIII OS=Suid herpesvirus 1
           (strain Indiana-Funkhauser / Becker) PE=2 SV=1
          Length = 479

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 214 PIIPSPAEAPEGATRTQPLPPARCLPQRASTKSHKTQIHQGE---HERTRI 71
           P  P+PA    GA  T P+PP     ++    +++T++H  +   H R RI
Sbjct: 51  PPTPAPASPEAGAVSTPPVPPPSVSRRKPPRNNNRTRVHGDKATAHGRKRI 101


>sp|Q9QUN3|BLNK_MOUSE B-cell linker protein OS=Mus musculus GN=Blnk
           PE=1 SV=1
          Length = 457

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
 Frame = -2

Query: 214 PIIPSP----AEAPEGATRTQPLPPAR-----CLPQRASTKSHKTQIHQGEHERTRI*AP 62
           P  PSP     + P    +T P+PP       C  +    + H+   H+ +  ++ +  P
Sbjct: 240 PAAPSPLPRAGKKPATPLKTTPVPPLPNASNVCEEKPVPAERHRGSSHRQDTVQSPVFPP 299

Query: 61  TERKVHRRPI 32
           T++ VH++P+
Sbjct: 300 TQKPVHQKPV 309


>sp|A3CLP1|SEPF_STRSV Cell division protein sepF OS=Streptococcus
           sanguinis (strain SK36) GN=sepF PE=3 SV=1
          Length = 199

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 199 PAEAPEGATRTQPLPPARCLPQRASTKSHKTQIHQGEHERTRI*APTERKV 47
           PA  P  A + QP P  +  PQ+ S+  + T++H  + E  +  A  + K+
Sbjct: 52  PAPRPAAAAKPQPKPQPKPQPQQKSSTENITRLHARQQELAQHRANADEKI 102


>sp|A5GNJ0|IF2_SYNPW Translation initiation factor IF-2
           OS=Synechococcus sp. (strain WH7803) GN=infB PE=3 SV=1
          Length = 1123

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 205 PSPAEAPEGATRTQPLPPARCLPQRASTKSHK 110
           P P  APE      P PPAR +PQ+ S  S K
Sbjct: 157 PKPKTAPERTVSRPPSPPARPVPQQPSPPSAK 188


>sp|O15063|K0355_HUMAN Uncharacterized protein KIAA0355 OS=Homo
           sapiens GN=KIAA0355 PE=1 SV=2
          Length = 1070

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = -2

Query: 256 TKGQGGEIKSEHVGPIIPSPAEAPEGATRTQPLPPARCLPQRASTKSHKTQIHQGEH 86
           T+ + G ++ +     +P P  AP+    T   P     PQ+ S K  + Q+   +H
Sbjct: 680 TEQKAGAMQPQQPSLPVPPPPRAPQAGAHTPLTPQPGLAPQQQSPKQQQPQVQYYQH 736


>sp|Q9CCF6|Y869_MYCLE Uncharacterized protein ML0869
           OS=Mycobacterium leprae GN=ML0869 PE=4 SV=2
          Length = 229

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 217 GPIIPSPAEAPEGATRTQPLPPARC--LPQRASTKSHKTQI 101
           GPI P+P  A E   R + L P +C    +RA   + K QI
Sbjct: 59  GPITPAPMTASEARARRKSLAPPKCHRAERRAKRAASKAQI 99


>sp|Q702N8|XIRP1_HUMAN Xin actin-binding repeat-containing protein 1
            OS=Homo sapiens GN=XIRP1 PE=1 SV=1
          Length = 1843

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = -2

Query: 262  RRTKGQGGEIKSEHVGPIIP---SPAEAPEGATRTQPLPPARCLPQRASTKSHKTQIHQG 92
            +RT G G + K+  + P +P    P   P+ A  TQ  PP R       + S  +++ Q 
Sbjct: 1301 QRTPG-GSQTKTPKLDPTMPPKKKPQLPPKPAHLTQSHPPQRLPKPLPLSPSFSSEVGQR 1359

Query: 91   EHER 80
            EH+R
Sbjct: 1360 EHQR 1363


>sp|Q9H607|OCEL1_HUMAN Occludin/ELL domain-containing protein 1
           OS=Homo sapiens GN=OCEL1 PE=2 SV=1
          Length = 264

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -2

Query: 259 RTKGQGGEIKSEHVGPIIPSPAEAPEGATRTQPLPPARCLPQRASTKSHKTQI 101
           +T+G  G + +   GP  P    AP G   + P PP  C PQ    K+   +I
Sbjct: 64  KTRGSRGHLHTHPPGPGPPLQGLAPRGLKTSAPRPP--CQPQPGPHKAKTKKI 114


>sp|Q9SS38|GYRBP_ARATH Probable DNA gyrase subunit B, chloroplastic
           OS=Arabidopsis thaliana GN=GYRBC PE=3 SV=1
          Length = 657

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 29  INWSTVDFSFRWCSDS-SPLMLALVN 103
           IN STVD S +WCSD+ S  ML   N
Sbjct: 266 INGSTVDVSLQWCSDAYSDTMLGYAN 291
tr_hit_id A7HS60
Definition tr|A7HS60|A7HS60_PARL1 17 kDa surface antigen OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
Align length 44
Score (bit) 37.4
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946867|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_A06, 5'
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7HS60|A7HS60_PARL1 17 kDa surface antigen OS=Parvibaculum la...    37   0.47 
tr|B3MEE0|B3MEE0_DROAN GF13017 OS=Drosophila ananassae GN=GF1301...    35   1.8  
tr|B3MM99|B3MM99_DROAN GF14339 OS=Drosophila ananassae GN=GF1433...    35   2.3  
tr|Q4UHE7|Q4UHE7_THEAN Tash1-or TashAT-like protein, putative OS...    35   3.0  
tr|B8CB97|B8CB97_THAPS Predicted protein OS=Thalassiosira pseudo...    34   4.0  
tr|Q7ZVB3|Q7ZVB3_DANRE Mediator complex subunit 14 OS=Danio reri...    34   5.2  
tr|A1A5F7|A1A5F7_XENTR Zswim5 protein OS=Xenopus tropicalis GN=z...    34   5.2  
tr|Q212Z9|Q212Z9_RHOPB MotA/TolQ/ExbB proton channel OS=Rhodopse...    34   5.2  
tr|A4VH15|A4VH15_PSEU5 Type II secretory pathway, component ExeA...    34   5.2  
tr|B7QKV0|B7QKV0_IXOSC Putative uncharacterized protein OS=Ixode...    33   6.7  
tr|Q7S8Z9|Q7S8Z9_NEUCR Putative uncharacterized protein OS=Neuro...    33   6.7  
tr|B2B2G5|B2B2G5_PODAN Predicted CDS Pa_6_3270 OS=Podospora anse...    33   6.7  
tr|Q2CHZ3|Q2CHZ3_9RHOB Potassium uptake transporter, transmembra...    33   8.8  
tr|A3K9I8|A3K9I8_9RHOB ABC transporter, membrane spanning protei...    33   8.8  
tr|Q2QV86|Q2QV86_ORYSJ Os12g0239200 protein OS=Oryza sativa subs...    33   8.8  
tr|A7NYV1|A7NYV1_VITVI Chromosome chr6 scaffold_3, whole genome ...    33   8.8  
tr|A2ZJC1|A2ZJC1_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.8  
tr|B6N4K2|B6N4K2_BRAFL Putative uncharacterized protein OS=Branc...    33   8.8  
tr|Q75BV2|Q75BV2_ASHGO ACR169Cp OS=Ashbya gossypii GN=ACR169C PE...    33   8.8  

>tr|A7HS60|A7HS60_PARL1 17 kDa surface antigen OS=Parvibaculum
           lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
           GN=Plav_1122 PE=3 SV=1
          Length = 430

 Score = 37.4 bits (85), Expect = 0.47
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 136 QRASTKSHKTQIHQGEHERTRI*APTERKVHRRPIDHHKVLQPV 5
           QRA  +  +  +HQ E +R R  AP +R  H + ++H +  +PV
Sbjct: 183 QRAEQQRQRQHVHQNERDRQRYQAPPDRGSHYKQVNHRQTYRPV 226


>tr|B3MEE0|B3MEE0_DROAN GF13017 OS=Drosophila ananassae GN=GF13017
           PE=4 SV=1
          Length = 2030

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
 Frame = -2

Query: 247 QGGEIKSEHVG-PIIPSPAEAPEGATRTQ-PLPPARCLPQRASTKSHKTQI--------- 101
           +GG  +SE    P  PSPA AP     ++ P PPA  +P   +  +H+T+          
Sbjct: 13  RGGSQQSEPATTPTPPSPASAPPSLPASKHPYPPAELMPSPGAAAAHRTRTPGDPYHLGY 72

Query: 100 --HQGEHERTRI*APTERKVHRR---PIDHHKV 17
             H G+H      A    K   R   P DHH+V
Sbjct: 73  PPHPGQHFYPPHMAGASAKSTGRASAPPDHHQV 105


>tr|B3MM99|B3MM99_DROAN GF14339 OS=Drosophila ananassae GN=GF14339
            PE=4 SV=1
          Length = 1335

 Score = 35.0 bits (79), Expect = 2.3
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -2

Query: 256  TKGQGGEIKSEHVGPIIPSPAEAPEGATRTQPLPPARCLPQRASTKSHKTQIHQGEHERT 77
            + G GG + S    P    P  AP G + +Q  P    L   +S+ SHK Q  Q + ER 
Sbjct: 1111 SSGGGGSVFS----PSGAGPTGAPAGISNSQSRPSVGALSNSSSSSSHKQQQKQAKEERE 1166

Query: 76   R 74
            R
Sbjct: 1167 R 1167


>tr|Q4UHE7|Q4UHE7_THEAN Tash1-or TashAT-like protein, putative
           OS=Theileria annulata GN=TA03140 PE=4 SV=1
          Length = 390

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = -3

Query: 252 KAKEEK*NPNMWGPSSHHQQKLLKVRPGRSRYHQQDACLREPPQKATKPRFTKASMSGLE 73
           + +++K  P       H Q+K+ K +  R R  +Q +   EP +K  +PR  KA     +
Sbjct: 144 RPRKQKPEPETDHSEVHKQEKVAKPKRKRGRPRKQKSDREEPKRKRGRPRKHKAEERETD 203

Query: 72  SEHQRKEKSTVDQLITT 22
            E    E S ++ L ++
Sbjct: 204 EEDHESEISDIELLFSS 220


>tr|B8CB97|B8CB97_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_24639 PE=4 SV=1
          Length = 982

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 244 GGEIKSEHVGPII--PSPAEAPEGAT--RTQPLPPARCLPQRASTKSHKTQIHQGEHE 83
           G  + S+HV PI   PSP  A +  +  ++QP PP R     A  K+++T +  G +E
Sbjct: 436 GSSMASQHVAPISPKPSPVSAYQSVSPQQSQPKPPGRPPLSPAKAKTNQTSVDDGFNE 493


>tr|Q7ZVB3|Q7ZVB3_DANRE Mediator complex subunit 14 OS=Danio rerio
           GN=med14 PE=2 SV=1
          Length = 604

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 208 IPSPAEAPEGATRTQPLPPARCLPQRASTKSHKT 107
           IP P+ +P   T +Q +PP R LPQR+   S  T
Sbjct: 318 IPDPSHSPRAGTSSQAMPPPRKLPQRSWAASIPT 351


>tr|A1A5F7|A1A5F7_XENTR Zswim5 protein OS=Xenopus tropicalis
           GN=zswim5 PE=2 SV=1
          Length = 1158

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 184 EGATRTQPLPPARCLPQRASTKSHKTQIHQG 92
           EGA  + PLPPA+ L  RA+  SH  Q H+G
Sbjct: 5   EGAPPSLPLPPAKRLCSRANPPSHAAQQHRG 35


>tr|Q212Z9|Q212Z9_RHOPB MotA/TolQ/ExbB proton channel
           OS=Rhodopseudomonas palustris (strain BisB18)
           GN=RPC_2992 PE=3 SV=1
          Length = 655

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 19/35 (54%), Positives = 21/35 (60%)
 Frame = +2

Query: 53  SFRWCSDSSPLMLALVNLGFVAFCGGSLRQASCWW 157
           SFRW + S+PLMLAL     V FC     QAS WW
Sbjct: 8   SFRWRTVSAPLMLAL-----VLFCVLWPGQASAWW 37


>tr|A4VH15|A4VH15_PSEU5 Type II secretory pathway, component ExeA
           (Predicted ATPase) OS=Pseudomonas stutzeri (strain
           A1501) GN=PST_0560 PE=4 SV=1
          Length = 523

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -2

Query: 205 PSPAEAPEGATRTQPLPPARCLPQRASTKS---HKTQIHQGEHERTRI*APT 59
           P+PA AP    R QP PP   +P  A T++      Q+ Q   ERT   APT
Sbjct: 372 PAPAPAPAPVERAQPAPPVATVPTPAPTQAPAPASPQVRQNVAERTP--APT 421


>tr|B7QKV0|B7QKV0_IXOSC Putative uncharacterized protein OS=Ixodes
           scapularis GN=IscW_ISCW014281 PE=4 SV=1
          Length = 166

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
 Frame = -2

Query: 217 GPIIPSPAEAPEGATRTQPLPPARCLPQRASTKSHKTQIHQGEHERTRI*APTERKVHR- 41
           G +   P   P G     PLPP R  PQR S++     +     E TR  AP    VH  
Sbjct: 83  GVVRSVPVREPAGRAWATPLPPRRGPPQRPSSR-----LGDPLSEATRAAAPAHADVHAG 137

Query: 40  -----RPIDH 26
                RP DH
Sbjct: 138 GTTGGRPADH 147