DK946895
Clone id YMU02A01NGRL0014_B20
Library
Length 273
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_B20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GGGGAGTTGCAGGGCACGCTGTCTCCCTTGCTCGTCTTCTTCCTCCGACCTTACCCATAT
CTTAGTTTTTTCTCTTTCCCCTTTCTTGCTACTTCTTCAGCTAAGCTTTGCGTCTGTCAG
TGCTTCCTCTTCTTCCTCAGGAAAAAGAAAACGAAAAACGCAAACAGGTTCTTGGTTATT
TACGAAAAACCACCTTCTTCGTGCACAGAGGGCGCGCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q14152
Definition sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens
Align length 39
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946895|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_B20, 5'
(204 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3... 31 2.2
sp|O75381|PEX14_HUMAN Peroxisomal membrane protein PEX14 OS=Homo... 30 4.9
sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Ory... 29 6.4
sp|P23116|EIF3A_MOUSE Eukaryotic translation initiation factor 3... 29 6.4

>sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3
subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1
Length = 1382

Score = 30.8 bits (68), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2

Query: 122 EEEEALTDAKLS*RSSKKGEREKTKIWVRSEEEDEQGRQ 6
EEE L D+ LS + S+ G+R+ W + E D + R+
Sbjct: 873 EEERRLGDSSLSRKDSRWGDRDSEGTWRKGPEADSEWRR 911


>sp|O75381|PEX14_HUMAN Peroxisomal membrane protein PEX14 OS=Homo
sapiens GN=PEX14 PE=1 SV=1
Length = 377

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2

Query: 143 FRFLFPEEEEEALTDAKLS*RSSKKGEREKTKIWVRSEEEDEQ 15
+ L P+EE E + D K R +GE EK + + +EEDE+
Sbjct: 290 YHLLGPQEEGEGVVDVKGQVRMEVQGEEEKRE--DKEDEEDEE 330


>sp|Q650T9|RH7_ORYSJ DEAD-box ATP-dependent RNA helicase 7 OS=Oryza
sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1
Length = 696

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2

Query: 125 EEEEEALTDAKLS*RSSKKGEREKTKIWVRSEEEDE 18
EEEE + T + ++KK ++EKTK V EEE+E
Sbjct: 61 EEEERSSTSSDEPAPAAKKAKKEKTKEKVVVEEEEE 96


>sp|P23116|EIF3A_MOUSE Eukaryotic translation initiation factor 3
subunit A OS=Mus musculus GN=Eif3a PE=2 SV=3
Length = 1344

Score = 29.3 bits (64), Expect = 6.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2

Query: 122 EEEEALTDAKLS*RSSKKGEREKTKIWVRSEEEDEQGRQ 6
EEE L D LS + S+ G+R+ W + E D + R+
Sbjct: 873 EEERRLGDDPLSRKDSRWGDRDSEGTWRKGPEADSEWRR 911


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK946895|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0014_B20, 5'
(204 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******