DK946898 |
Clone id |
YMU02A01NGRL0014_B23 |
Library |
YMU02 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0014_B23. 5' end sequence. |
Accession |
DK946898 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL105Contig1 |
Sequence |
ACGGGCGCAGCTCTGGGCAGACAAGGCATATAAGAAAAGAAACCTTGGAAACGAGTGGAA GAAGCCCTTTGCAGGCTCCTCCCACGCCAAAGGCATCGTTCTTGAGAAGATTGGTATCGA AGCCAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAGCTTATCAAGAATGG AAAGAAGATTGCGGCCTTTGTTCCAAATGATGGCTGCCTGAACTACATTGAAGAAAATGA TGAAGTGTTGATTGCTGGGTTCGGGCGTAAGGGACATGCTGTTGGTGATATTCCTGGAGT GCGGTTCAAGGTTGTGAAGGTATCTGGAGTGTCTCTCCTTGCCCTTTTCAAGGAAAAGAA GGAGAAACCAAGGTCTTAAGTTTTGAGAGGATATGTGAAGGTCCAGCAGGACTTGTACCT TATTGATTAGCTTCCTGGGAATGTTCAGGAGAGATCATCACGAANATTTTGTTAATCTCA TGACATGAGCCAGCTGCTTCTTTTCGATGCATGCGTTTCCTTCTTTTGAACCATGGGATG GAGAATCATTGTGTCAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9M5Z9 |
Definition |
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula |
Align length |
125 |
Score (bit) |
244.0 |
E-value |
3.0e-64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK946898|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0014_B23, 5' (545 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul... 244 3e-64 sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana... 243 3e-64 sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis... 241 2e-63 sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis... 237 3e-62 sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va... 214 3e-55 sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru... 213 4e-55 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan... 213 4e-55 sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel... 212 8e-55 sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube... 211 1e-54 sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi ... 209 9e-54 sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc... 207 3e-53 sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu... 207 3e-53 sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G... 207 3e-53 sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G... 207 3e-53 sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan... 207 3e-53 sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=... 207 3e-53 sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra... 206 8e-53 sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 OS=Caenorhabditis... 206 8e-53 sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP... 205 1e-52 sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu... 204 2e-52 sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ... 204 3e-52 sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ... 204 3e-52 sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ... 204 3e-52 sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra... 204 3e-52 sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 OS=Ciona intestin... 200 3e-51 sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo... 197 3e-50 sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 OS=Gillichthys mi... 194 2e-49 sp|P06147|RS12_TETTH 40S ribosomal protein S12 OS=Tetrahymena th... 187 4e-47 sp|Q55A19|RS23_DICDI 40S ribosomal protein S23 OS=Dictyostelium ... 182 7e-46 sp|Q8SR65|RS23_ENCCU 40S ribosomal protein S23 OS=Encephalitozoo... 152 8e-37
>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1 Length = 142
Score = 244 bits (622), Expect = 3e-64 Identities = 120/125 (96%), Positives = 122/125 (97%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG 181 R Q WADK+YKK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG Sbjct: 18 RTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG 77
Query: 182 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 361 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 362 EKPRS 376 EKPRS Sbjct: 138 EKPRS 142
>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1 Length = 142
Score = 243 bits (621), Expect = 3e-64 Identities = 120/125 (96%), Positives = 122/125 (97%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG 181 R Q WADK+YKK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG Sbjct: 18 RRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNG 77
Query: 182 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 361 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK Sbjct: 78 KKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Query: 362 EKPRS 376 EKPRS Sbjct: 138 EKPRS 142
>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2 Length = 142
Score = 241 bits (615), Expect = 2e-63 Identities = 119/123 (96%), Positives = 120/123 (97%) Frame = +2
Query: 8 QLWADKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 187 Q WADK YKK +LGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK Sbjct: 20 QRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 79
Query: 188 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 367 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK Sbjct: 80 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 139
Query: 368 PRS 376 PRS Sbjct: 140 PRS 142
>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2 Length = 142
Score = 237 bits (604), Expect = 3e-62 Identities = 118/123 (95%), Positives = 118/123 (95%) Frame = +2
Query: 8 QLWADKAYKKRNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 187 Q WADK YKK N GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK Sbjct: 20 QRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK 79
Query: 188 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 367 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK Sbjct: 80 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 139
Query: 368 PRS 376 PRS Sbjct: 140 PRS 142
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 Length = 143
Score = 214 bits (544), Expect = 3e-55 Identities = 104/126 (82%), Positives = 112/126 (88%), Gaps = 1/126 (0%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 178 R Q W DK YKK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN Sbjct: 18 RDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 77
Query: 179 GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 358 GKKI AFVP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK Sbjct: 78 GKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 137
Query: 359 KEKPRS 376 KE+PRS Sbjct: 138 KERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1 Length = 143
Score = 213 bits (543), Expect = 4e-55 Identities = 102/126 (80%), Positives = 113/126 (89%), Gaps = 1/126 (0%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 178 R Q WADK YKK ++G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN Sbjct: 18 REQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 77
Query: 179 GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 358 GKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK Sbjct: 78 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 137
Query: 359 KEKPRS 376 KE+PRS Sbjct: 138 KERPRS 143
>sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1 Length = 143
Score = 213 bits (543), Expect = 4e-55 Identities = 102/126 (80%), Positives = 113/126 (89%), Gaps = 1/126 (0%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 178 R Q WADK YKK ++G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN Sbjct: 18 REQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 77
Query: 179 GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 358 GKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK Sbjct: 78 GKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 137
Query: 359 KEKPRS 376 KE+PRS Sbjct: 138 KERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1 Length = 143
Score = 212 bits (540), Expect = 8e-55 Identities = 104/126 (82%), Positives = 112/126 (88%), Gaps = 1/126 (0%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 178 R Q WADK YKK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN Sbjct: 18 RDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 77
Query: 179 GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 358 GKKI AFVP DG LNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEK Sbjct: 78 GKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 137
Query: 359 KEKPRS 376 KE+PRS Sbjct: 138 KERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1 Length = 143
Score = 211 bits (538), Expect = 1e-54 Identities = 102/126 (80%), Positives = 112/126 (88%), Gaps = 1/126 (0%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 178 R Q W DK YKK +LG WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN Sbjct: 18 REQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 77
Query: 179 GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 358 GKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+K Sbjct: 78 GKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQK 137
Query: 359 KEKPRS 376 KE+PRS Sbjct: 138 KERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1 Length = 143
Score = 209 bits (531), Expect = 9e-54 Identities = 100/126 (79%), Positives = 111/126 (88%), Gaps = 1/126 (0%) Frame = +2
Query: 2 RAQLWADKAYKKRNLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKN 178 +AQ W DK YKK +LG WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKN Sbjct: 18 QAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 77
Query: 179 GKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK 358 GKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+ SL+ALFK K Sbjct: 78 GKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGK 137
Query: 359 KEKPRS 376 KE+PRS Sbjct: 138 KERPRS 143
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SB19 |
Definition |
tr|A9SB19|A9SB19_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
125 |
Score (bit) |
248.0 |
E-value |
2.0e-64 |
Report |
|